MC05g1035 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g1035
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Aldolase-type TIM barrel family protein
Location	MC05: 14006725 .. 14006811 (-)
RNA-Seq Expression	MC05g1035
Synteny	MC05g1035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTGATCTTCTCGTTGTCGCATCCAAGACCCGAAAAATTATAAATATTAAGAAAGACCAGTTTTGTGCTCCATCTGTGAGTGAA

mRNA sequence

CAGACTGATCTTCTCGTTGTCGCATCCAAGACCCGAAAAATTATAAATATTAAGAAAGACCAGTTTTGTGCTCCATCTGTGAGTGAA

Coding sequence (CDS)

CAGACTGATCTTCTCGTTGTCGCATCCAAGACCCGAAAAATTATAAATATTAAGAAAGACCAGTTTTGTGCTCCATCTGTGAGTGAA

Protein sequence

QTDLLVVASKTRKIINIKKDQFCAPSVSE

Homology

[Close]

BLAST of MC05g1035 vs. ExPASy Swiss-Prot
Match: Q9AV97 (2-dehydro-3-deoxyphosphooctonate aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=KDSA1 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 2.5e-05
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 30
           QTDLLV A++T KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAQTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. ExPASy Swiss-Prot
Match: O50044 (2-dehydro-3-deoxyphosphooctonate aldolase OS=Pisum sativum OX=3888 GN=KDSA PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.5e-05
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSV 28
           QTDLLV A+KT KIINIKK QFCAPSV
Sbjct: 119 QTDLLVAAAKTGKIINIKKGQFCAPSV 145

[Close]

BLAST of MC05g1035 vs. NCBI nr
Match: CAD61334.1 (3-deoxy-D-manno-2-octulosonic acid-8-phosphate, partial [Nicotiana tabacum])

HSP 1 Score: 48.9 bits (115), Expect = 1.79e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
          QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 66 QTDLLVAAAKTGKIINIKKGQFCAPSVME 94

[Close]

BLAST of MC05g1035 vs. NCBI nr
Match: MCI07647.1 (peroxisomal (S)-2-hydroxy-acid oxidase-like [Trifolium medium])

HSP 1 Score: 47.4 bits (111), Expect = 2.00e-05
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  QTDLLVVASKTRKIINIKKDQFCAPSV 27
          QTDLLV A+KT KIINIKK QFCAPSV
Sbjct: 20 QTDLLVAAAKTGKIINIKKGQFCAPSV 46

[Close]

BLAST of MC05g1035 vs. NCBI nr
Match: XP_009800674.1 (PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Nicotiana sylvestris])

HSP 1 Score: 48.9 bits (115), Expect = 2.63e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
           QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAKTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. NCBI nr
Match: XP_038717776.1 (2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X5 [Tripterygium wilfordii])

HSP 1 Score: 48.9 bits (115), Expect = 2.86e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
           QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 97  QTDLLVAAAKTGKIINIKKGQFCAPSVME 125

[Close]

BLAST of MC05g1035 vs. NCBI nr
Match: XP_038717773.1 (2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X2 [Tripterygium wilfordii])

HSP 1 Score: 48.9 bits (115), Expect = 2.96e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
           QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAKTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. ExPASy TrEMBL
Match: Q7XZC8 (3-deoxy-8-phosphooctulonate synthase (Fragment) OS=Nicotiana tabacum OX=4097 GN=kdsA PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.69e-06
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
          QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 66 QTDLLVAAAKTGKIINIKKGQFCAPSVME 94

[Close]

BLAST of MC05g1035 vs. ExPASy TrEMBL
Match: A0A392P6K6 (3-deoxy-8-phosphooctulonate synthase (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0028716 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.69e-06
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  QTDLLVVASKTRKIINIKKDQFCAPSV 27
          QTDLLV A+KT KIINIKK QFCAPSV
Sbjct: 20 QTDLLVAAAKTGKIINIKKGQFCAPSV 46

[Close]

BLAST of MC05g1035 vs. ExPASy TrEMBL
Match: A0A1U7YN55 (3-deoxy-8-phosphooctulonate synthase OS=Nicotiana sylvestris OX=4096 GN=LOC104246560 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.27e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
           QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAKTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. ExPASy TrEMBL
Match: A0A7J7D082 (3-deoxy-8-phosphooctulonate synthase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00967 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.43e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
           QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAKTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. ExPASy TrEMBL
Match: A0A1S4CUN3 (3-deoxy-8-phosphooctulonate synthase OS=Nicotiana tabacum OX=4097 GN=LOC107822777 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.43e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 29
           QTDLLV A+KT KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAKTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. TAIR 10
Match: AT1G79500.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 30
           QTDLLV A++T KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAQTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. TAIR 10
Match: AT1G79500.2 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 30
           QTDLLV A++T KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAQTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. TAIR 10
Match: AT1G79500.3 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 30
           QTDLLV A++T KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAQTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. TAIR 10
Match: AT1G79500.4 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 30
           QTDLLV A++T KIINIKK QFCAPSV E
Sbjct: 119 QTDLLVAAAQTGKIINIKKGQFCAPSVME 147

[Close]

BLAST of MC05g1035 vs. TAIR 10
Match: AT1G79500.5 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   QTDLLVVASKTRKIINIKKDQFCAPSVSE 30
           QTDLLV A++T KIINIKK QFCAPSV E
Sbjct: 85  QTDLLVAAAQTGKIINIKKGQFCAPSVME 113

The following BLAST results are available for this feature:

BLAST of MC05g1035 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AV97	2.5e-05	79.31	2-dehydro-3-deoxyphosphooctonate aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=K...	[more]
O50044	2.5e-05	85.19	2-dehydro-3-deoxyphosphooctonate aldolase OS=Pisum sativum OX=3888 GN=KDSA PE=2 ...	[more]

BLAST of MC05g1035 vs. NCBI nr


Match Name	E-value	Identity	Description
CAD61334.1	1.79e-05	82.76	3-deoxy-D-manno-2-octulosonic acid-8-phosphate, partial [Nicotiana tabacum]	[more]
MCI07647.1	2.00e-05	85.19	peroxisomal (S)-2-hydroxy-acid oxidase-like [Trifolium medium]	[more]
XP_009800674.1	2.63e-05	82.76	PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Nicotiana sylvestri...	[more]
XP_038717776.1	2.86e-05	82.76	2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X5 [Tripterygium wilfordii]	[more]
XP_038717773.1	2.96e-05	82.76	2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X2 [Tripterygium wilfordii]	[more]

BLAST of MC05g1035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q7XZC8	8.69e-06	82.76	3-deoxy-8-phosphooctulonate synthase (Fragment) OS=Nicotiana tabacum OX=4097 GN=...	[more]
A0A392P6K6	9.69e-06	85.19	3-deoxy-8-phosphooctulonate synthase (Fragment) OS=Trifolium medium OX=97028 GN=...	[more]
A0A1U7YN55	1.27e-05	82.76	3-deoxy-8-phosphooctulonate synthase OS=Nicotiana sylvestris OX=4096 GN=LOC10424...	[more]
A0A7J7D082	1.43e-05	82.76	3-deoxy-8-phosphooctulonate synthase OS=Tripterygium wilfordii OX=458696 GN=HS08...	[more]
A0A1S4CUN3	1.43e-05	82.76	3-deoxy-8-phosphooctulonate synthase OS=Nicotiana tabacum OX=4097 GN=LOC10782277...	[more]

BLAST of MC05g1035 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79500.1	1.8e-06	79.31	Aldolase-type TIM barrel family protein	[more]
AT1G79500.2	1.8e-06	79.31	Aldolase-type TIM barrel family protein	[more]
AT1G79500.3	1.8e-06	79.31	Aldolase-type TIM barrel family protein	[more]
AT1G79500.4	1.8e-06	79.31	Aldolase-type TIM barrel family protein	[more]
AT1G79500.5	1.8e-06	79.31	Aldolase-type TIM barrel family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 1..29 e-value: 6.1E-6 score: 27.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g1035.1	MC05g1035.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity