MC05g1031 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g1031
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S12
Location	MC05: 13954381 .. 13954504 (+)
RNA-Seq Expression	MC05g1031
Synteny	MC05g1031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACATGTTTCAACGAGAACACCGAAAAAACCTAATTTAGCTCCACGTAGGATAGCGAAAGTACAGTTGAACAATCAAACAAGATATATATGCTCACATTCCAAACAAAGGTCATAATTTACAA

mRNA sequence

CCACATGTTTCAACGAGAACACCGAAAAAACCTAATTTAGCTCCACGTAGGATAGCGAAAGTACAGTTGAACAATCAAGATATATATGCTCACATTCCAAACAAAGGTCATAATTTACAA

Coding sequence (CDS)

CCACATGTTTCAACGAGAACACCGAAAAAACCTAATTTAGCTCCACGTAGGATAGCGAAAGTACAGTTGAACAATCAAGATATATATGCTCACATTCCAAACAAAGGTCATAATTTACAA

Protein sequence

PHVSTRTPKKPNLAPRRIAKVQLNNQDIYAHIPNKGHNLQ

Homology

[Close]

BLAST of MC05g1031 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy Swiss-Prot
Match: P68536 (Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy Swiss-Prot
Match: Q95869 (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-09
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHN Q
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy Swiss-Prot
Match: P50892 (Ribosomal protein S12, mitochondrial OS=Raphanus sativus OX=3726 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-09
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHN Q
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-09
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P V TRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHN Q
Sbjct: 35 PRVPTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQ 75

[Close]

BLAST of MC05g1031 vs. NCBI nr
Match: YP_009694648.1 (ribosomal protein S12 [Prunus avium] >QEM24355.1 ribosomal protein S12 [Prunus avium] >QSV10467.1 ribosomal protein S12 [Prunus avium])

HSP 1 Score: 64.7 bits (156), Expect = 9.17e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+NQ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNQHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. NCBI nr
Match: YP_009430445.1 (ribosomal protein S12 [Solanum lycopersicum] >YP_009430492.1 ribosomal protein S12 [Solanum pennellii] >AAD03039.1 ribosomal protein S12 [Solanum tuberosum] >ATW72835.1 ribosomal protein S12 [Solanum commersonii] >QPF97015.1 ribosomal protein S12 [Solanum stenotomum subsp. goniocalyx] >QPF97155.1 ribosomal protein S12 [Solanum ahanhuiri] >QPF97222.1 ribosomal protein S12 [Solanum phureja] >QPF97289.1 ribosomal protein S12 [Solanum stenotomum subsp. stenotomum] >QPF97362.1 ribosomal protein S12 [Solanum bukasovii] >QPF97429.1 ribosomal protein S12 [Solanum tuberosum subsp. andigenum] >QPF97570.1 ribosomal protein S12 [Solanum x juzepczukii] >QPF97642.1 ribosomal protein S12 [Solanum chaucha] >QPF97715.1 ribosomal protein S12 [Solanum x curtilobum])

HSP 1 Score: 63.2 bits (152), Expect = 3.52e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. NCBI nr
Match: QMQ98106.1 (ribosomal protein S12 [Solanum anguivi])

HSP 1 Score: 63.2 bits (152), Expect = 3.60e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. NCBI nr
Match: YP_006666121.1 (ribosomal protein S12 [Malus domestica] >YP_006666133.1 ribosomal protein S12 [Malus domestica] >YP_009711325.1 ribosomal protein S12 [Rhaphiolepis bibas] >YP_009994905.1 ribosomal protein S12 [Sorbus torminalis] >YP_009994960.1 ribosomal protein S12 [Sorbus aucuparia] >YP_010047134.1 ribosomal protein S12 [Pyrus betulifolia] >ALJ78541.1 ribosomal protein S12 [Malus hupehensis var. mengshanensis] >QGI24982.1 ribosomal protein S12 [Rhaphiolepis bibas] >QKV49065.1 ribosomal protein S12 [Malus domestica] >QKV49077.1 ribosomal protein S12 [Malus domestica] >QNP09199.1 ribosomal protein S12 [Sorbus torminalis])

HSP 1 Score: 63.2 bits (152), Expect = 3.68e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. NCBI nr
Match: YP_009295080.1 (ribosomal protein S12 [Ipomoea nil] >BAV56611.1 ribosomal protein S12 [Ipomoea nil])

HSP 1 Score: 63.2 bits (152), Expect = 3.68e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy TrEMBL
Match: A0A5C1J055 (Ribosomal protein S12 OS=Prunus avium OX=42229 GN=rps12 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.44e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+NQ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNQHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy TrEMBL
Match: A0A290WL09 (30S ribosomal protein S12, chloroplastic OS=Solanum lycopersicum OX=4081 GN=rps12 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.70e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy TrEMBL
Match: A0A7S9DG19 (Ribosomal protein S12 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=rps12 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.70e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy TrEMBL
Match: A0A2H4PTU6 (30S ribosomal protein S12, chloroplastic OS=Solanum commersonii OX=4109 GN=rps12 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.70e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. ExPASy TrEMBL
Match: A0A7S9DH11 (Ribosomal protein S12 OS=Solanum tuberosum subsp. andigenum OX=80418 GN=rps12 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.70e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 40
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHNLQ
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQ 75

[Close]

BLAST of MC05g1031 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHN Q
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQ 75

[Close]

BLAST of MC05g1031 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1  PHVSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          P VSTRTPKKPN APR+IAKV+L+N+ DI+AHIP +GHN Q
Sbjct: 35 PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQ 75

[Close]

BLAST of MC05g1031 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 40.8 bits (94), Expect = 3.0e-04
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 3  VSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          V T TPKKPN A R++A+V+L +  +I A+IP  GHNLQ
Sbjct: 37 VYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ 75

[Close]

BLAST of MC05g1031 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 40.8 bits (94), Expect = 3.0e-04
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 3  VSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          V T TPKKPN A R++A+V+L +  +I A+IP  GHNLQ
Sbjct: 37 VYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ 75

[Close]

BLAST of MC05g1031 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 40.8 bits (94), Expect = 3.0e-04
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 3  VSTRTPKKPNLAPRRIAKVQLNNQ-DIYAHIPNKGHNLQ 41
          V T TPKKPN A R++A+V+L +  +I A+IP  GHNLQ
Sbjct: 37 VYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ 75

The following BLAST results are available for this feature:

BLAST of MC05g1031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68535	2.7e-10	75.61	Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV...	[more]
P68536	2.7e-10	75.61	Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 S...	[more]
Q95869	1.4e-09	73.17	Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE...	[more]
P50892	1.4e-09	73.17	Ribosomal protein S12, mitochondrial OS=Raphanus sativus OX=3726 GN=RPS12 PE=3 S...	[more]
P60096	5.1e-09	70.73	Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE...	[more]

BLAST of MC05g1031 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009694648.1	9.17e-12	78.05	ribosomal protein S12 [Prunus avium] >QEM24355.1 ribosomal protein S12 [Prunus a...	[more]
YP_009430445.1	3.52e-11	75.61	ribosomal protein S12 [Solanum lycopersicum] >YP_009430492.1 ribosomal protein S...	[more]
QMQ98106.1	3.60e-11	75.61	ribosomal protein S12 [Solanum anguivi]	[more]
YP_006666121.1	3.68e-11	75.61	ribosomal protein S12 [Malus domestica] >YP_006666133.1 ribosomal protein S12 [M...	[more]
YP_009295080.1	3.68e-11	75.61	ribosomal protein S12 [Ipomoea nil] >BAV56611.1 ribosomal protein S12 [Ipomoea n...	[more]

BLAST of MC05g1031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C1J055	4.44e-12	78.05	Ribosomal protein S12 OS=Prunus avium OX=42229 GN=rps12 PE=3 SV=1	[more]
A0A290WL09	1.70e-11	75.61	30S ribosomal protein S12, chloroplastic OS=Solanum lycopersicum OX=4081 GN=rps1...	[more]
A0A7S9DG19	1.70e-11	75.61	Ribosomal protein S12 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=rps1...	[more]
A0A2H4PTU6	1.70e-11	75.61	30S ribosomal protein S12, chloroplastic OS=Solanum commersonii OX=4109 GN=rps12...	[more]
A0A7S9DH11	1.70e-11	75.61	Ribosomal protein S12 OS=Solanum tuberosum subsp. andigenum OX=80418 GN=rps12 PE...	[more]

BLAST of MC05g1031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07675.1	9.6e-11	73.17	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	9.6e-11	73.17	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	3.0e-04	56.41	ribosomal protein S12A	[more]
ATCG01230.1	3.0e-04	56.41	ribosomal protein S12B	[more]
ATCG00905.1	3.0e-04	56.41	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 3..40 e-value: 3.3E-8 score: 33.1
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..40
None	No IPR available	GENE3D	2.40.50.140		coord: 1..40 e-value: 1.1E-11 score: 46.2
None	No IPR available	PANTHER	PTHR11652:SF54	RIBOSOMAL PROTEIN S12/S23-RELATED	coord: 1..40
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g1031.1	MC05g1031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome