MC05g1010 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g1010
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrotransposon protein
LocationMC05: 13205105 .. 13205245 (-)
RNA-Seq ExpressionMC05g1010
SyntenyMC05g1010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGAACTTGAGTCCATCTCTGGAATGACATTGGAGGACTGTTTGGCAGTCAGACAAACATTACTTGCGGACTACAATAAAGTGAACACATTCCTTGACTTCCCACCAAATTGGAAGTACAGGTACTACATGCATCTACTT

mRNA sequence

TCAGAACTTGAGTCCATCTCTGGAATGACATTGGAGGACTGTTTGGCAGTCAGACAAACATTACTTGCGGACTACAATAAAGTGAACACATTCCTTGACTTCCCACCAAATTGGAAGTACAGGTACTACATGCATCTACTT

Coding sequence (CDS)

TCAGAACTTGAGTCCATCTCTGGAATGACATTGGAGGACTGTTTGGCAGTCAGACAAACATTACTTGCGGACTACAATAAAGTGAACACATTCCTTGACTTCCCACCAAATTGGAAGTACAGGTACTACATGCATCTACTT

Protein sequence

SELESISGMTLEDCLAVRQTLLADYNKVNTFLDFPPNWKYRYYMHLL
Homology
[Close]
BLAST of MC05g1010 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 7.74e-06
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 1   SELESISGMTLEDCLAVRQTLLADYNKVNTFLDFPPNWKYRYYMHLL 47
           +EL++I GM ++DCL V ++LL D   ++ FLD+P  WKYR  M +L
Sbjct: 497 TELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 543

[Close]
BLAST of MC05g1010 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 2.42e-05
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   ELESISGMTLEDCLAVRQTLLADYNKVNTFLDFPPNWKYRYYMHLL 47
           +L++I GM ++DCL V ++LL D   ++ FLD+P  WKYR  M +L
Sbjct: 212 DLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 257

[Close]
BLAST of MC05g1010 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.75e-06
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 1   SELESISGMTLEDCLAVRQTLLADYNKVNTFLDFPPNWKYRYYMHLL 47
           +EL++I GM ++DCL V ++LL D   ++ FLD+P  WKYR  M +L
Sbjct: 497 TELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 543

[Close]
BLAST of MC05g1010 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.17e-05
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   ELESISGMTLEDCLAVRQTLLADYNKVNTFLDFPPNWKYRYYMHLL 47
           +L++I GM ++DCL V ++LL D   ++ FLD+P  WKYR  M +L
Sbjct: 212 DLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 257

The following BLAST results are available for this feature:
BLAST of MC05g1010 vs.
Match NameE-valueIdentityDescription
BLAST of MC05g1010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065306.17.74e-0646.81retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050106.12.42e-0545.65retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MC05g1010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VG453.75e-0646.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7F71.17e-0545.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MC05g1010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g1010.1MC05g1010.1mRNA