MC05g0896 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0896
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	NAC domain-containing protein
Location	MC05: 8446755 .. 8446959 (+)
RNA-Seq Expression	MC05g0896
Synteny	MC05g0896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTCTTTAATAAGATCCATGGGTACGAATATCTTCAAGGTCGTGTGTCCGATTATGATTTCTAACGGCTATAGCGAATCTTGGAAAATTTGGGAATCTTTTGGTGGTGTTGACGGCAAATATCTTTATTTCTTCGCTAAGTTAAAGAGGTTGGCGAACAACACTAGACGATTGTCATCTCACATCACTCAAAAGATTAGCTTG

mRNA sequence

TATCTCTTTAATAAGATCCATGGGTACGAATATCTTCAAGGTCGTGTGTCCGATTATGATTTCGGCTATAGCGAATCTTGGAAAATTTGGGAATCTTTTGGTGGTGTTGACGGCAAATATCTTTATTTCTTCGCTAAGTTAAAGAGGTTGGCGAACAACACTAGACGATTGTCATCTCACATCACTCAAAAGATTAGCTTG

Coding sequence (CDS)

TATCTCTTTAATAAGATCCATGGGTACGAATATCTTCAAGGTCGTGTGTCCGATTATGATTTCGGCTATAGCGAATCTTGGAAAATTTGGGAATCTTTTGGTGGTGTTGACGGCAAATATCTTTATTTCTTCGCTAAGTTAAAGAGGTTGGCGAACAACACTAGACGATTGTCATCTCACATCACTCAAAAGATTAGCTTG

Protein sequence

YLFNKIHGYEYLQGRVSDYDFGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSSHITQKISL

Homology

[Close]

BLAST of MC05g0896 vs. NCBI nr
Match: XP_022145828.1 (protein BEARSKIN2-like [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 3.48e-20
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
           +LFNKI+GY+YLQG VSD D +G+SE W+I ESFGG+DG+ LYFF KL R  NN+ +LS+
Sbjct: 40  FLFNKIYGYKYLQGPVSDCDLYGHSEPWEICESFGGIDGEDLYFFTKLNRSTNNSGQLSA 99

Query: 61  HITQKISL 67
           H+T+K+ L
Sbjct: 100 HVTRKVGL 107

[Close]

BLAST of MC05g0896 vs. NCBI nr
Match: XP_023511537.1 (NAC transcription factor 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 2.17e-16
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL+ KIHG  Y +  V D D +G  E W+IW  FGG+DG+YLYFF KLKR  NN+ RLS+
Sbjct: 25 YLYWKIHGQPYFKRAVLDSDLYGEIELWEIWLRFGGIDGEYLYFFTKLKRSTNNSGRLSA 84

Query: 61 HITQKISL 67
          HI +K+ L
Sbjct: 85 HINRKVGL 92

[Close]

BLAST of MC05g0896 vs. NCBI nr
Match: KAE8651260.1 (hypothetical protein Csa_001645, partial [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.34e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL  KI+G  Y QG V D+D +G  E W+IWESFGG+DG+ LYFF KLKR   N+  LS+
Sbjct: 30 YLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWESFGGIDGEDLYFFTKLKRSTTNSGNLST 89

Query: 61 HITQKISL 67
          HI +KI L
Sbjct: 90 HINRKIGL 97

[Close]

BLAST of MC05g0896 vs. NCBI nr
Match: KAA0041056.1 (NAC domain-containing protein 83-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.86e-16
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL+ KI+G  Y QG + D+D +G +E W+IW+SF G+DG+ LYFF KLKR   N  +LS+
Sbjct: 30 YLYCKINGQPYFQGAIFDFDLYGGTEPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLST 89

Query: 61 HITQKISL 67
          HI++KI L
Sbjct: 90 HISRKIGL 97

[Close]

BLAST of MC05g0896 vs. NCBI nr
Match: XP_022967653.1 (NAC domain-containing protein 18-like [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 5.14e-16
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL  KIHG  Y +  V D D +G  E W+IW  FGG+DG++LYFF KLKR  NN+ RLS+
Sbjct: 25 YLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFTKLKRFTNNSGRLSA 84

Query: 61 HITQKISL 67
          HI +K+ L
Sbjct: 85 HINRKVGL 92

[Close]

BLAST of MC05g0896 vs. ExPASy TrEMBL
Match: A0A6J1CX07 (protein BEARSKIN2-like OS=Momordica charantia OX=3673 GN=LOC111015190 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.69e-20
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
           +LFNKI+GY+YLQG VSD D +G+SE W+I ESFGG+DG+ LYFF KL R  NN+ +LS+
Sbjct: 40  FLFNKIYGYKYLQGPVSDCDLYGHSEPWEICESFGGIDGEDLYFFTKLNRSTNNSGQLSA 99

Query: 61  HITQKISL 67
           H+T+K+ L
Sbjct: 100 HVTRKVGL 107

[Close]

BLAST of MC05g0896 vs. ExPASy TrEMBL
Match: A0A5A7TG87 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00280 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.87e-16
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL+ KI+G  Y QG + D+D +G +E W+IW+SF G+DG+ LYFF KLKR   N  +LS+
Sbjct: 30 YLYCKINGQPYFQGAIFDFDLYGGTEPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLST 89

Query: 61 HITQKISL 67
          HI++KI L
Sbjct: 90 HISRKIGL 97

[Close]

BLAST of MC05g0896 vs. ExPASy TrEMBL
Match: A0A6J1HVP9 (NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111467098 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.49e-16
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL  KIHG  Y +  V D D +G  E W+IW  FGG+DG++LYFF KLKR  NN+ RLS+
Sbjct: 25 YLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFTKLKRFTNNSGRLSA 84

Query: 61 HITQKISL 67
          HI +K+ L
Sbjct: 85 HINRKVGL 92

[Close]

BLAST of MC05g0896 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.16e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL  KIHG  Y +  V D D +G  E W+IW  FGG+DG++LYFF KLKR  NN+ RLS+
Sbjct: 25 YLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFTKLKRSTNNSGRLSA 84

Query: 61 HITQKISL 67
          HI +K+ L
Sbjct: 85 HINRKVGL 92

[Close]

BLAST of MC05g0896 vs. ExPASy TrEMBL
Match: A0A0A0LFJ5 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.23e-15
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  YLFNKIHGYEYLQGRVSDYD-FGYSESWKIWESFGGVDGKYLYFFAKLKRLANNTRRLSS 60
          YL  KI+G  Y QG V D+D +G  E W+IW+SFGG+DG+ LYFF KLKR   N+  LS+
Sbjct: 30 YLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLST 89

Query: 61 HITQKISL 67
          HI +KI L
Sbjct: 90 HINRKIGL 97

The following BLAST results are available for this feature:

BLAST of MC05g0896 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g0896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145828.1	3.48e-20	61.76	protein BEARSKIN2-like [Momordica charantia]	[more]
XP_023511537.1	2.17e-16	55.88	NAC transcription factor 25-like [Cucurbita pepo subsp. pepo]	[more]
KAE8651260.1	3.34e-16	57.35	hypothetical protein Csa_001645, partial [Cucumis sativus]	[more]
KAA0041056.1	3.86e-16	52.94	NAC domain-containing protein 83-like [Cucumis melo var. makuwa]	[more]
XP_022967653.1	5.14e-16	54.41	NAC domain-containing protein 18-like [Cucurbita maxima]	[more]

BLAST of MC05g0896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX07	1.69e-20	61.76	protein BEARSKIN2-like OS=Momordica charantia OX=3673 GN=LOC111015190 PE=4 SV=1	[more]
A0A5A7TG87	1.87e-16	52.94	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1HVP9	2.49e-16	54.41	NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HSR6	1.16e-15	54.41	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A0A0LFJ5	1.23e-15	55.88	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV...	[more]

BLAST of MC05g0896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0896.1	MC05g0896.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding