MC05g0895 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g0895
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibonuclease H
LocationMC05: 8428943 .. 8429103 (-)
RNA-Seq ExpressionMC05g0895
SyntenyMC05g0895
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACACACTCCGACAACAGTTCCACTCAAACAGGTCCTGATGGAGATAAAAGACCAGAGACTGCTCAGATGGCCTGAAAGGATGAAAGCACCCTCCAGCAAAAGAAGCAAAGGTATTATTTGTTCCATCGAGATCATGGCCACACGATACAGAATTGTTTC

mRNA sequence

AAACACACTCCGACAACAGTTCCACTCAAACAGGTCCTGATGGAGATAAAAGACCAGAGACTGCTCAGATGGCCTGAAAGGATGAAAGCACCCTCCAGCAAAAGAAGCAAAGGTTATTTGTTCCATCGAGATCATGGCCACACGATACAGAATTGTTTC

Coding sequence (CDS)

AAACACACTCCGACAACAGTTCCACTCAAACAGGTCCTGATGGAGATAAAAGACCAGAGACTGCTCAGATGGCCTGAAAGGATGAAAGCACCCTCCAGCAAAAGAAGCAAAGGTTATTTGTTCCATCGAGATCATGGCCACACGATACAGAATTGTTTC

Protein sequence

KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGYLFHRDHGHTIQNCF
Homology
BLAST of MC05g0895 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 4.33e-20
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 1  KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKG--YLFHRDHGHTIQNCF 53
          K TPTTV L+QVLMEIKDQRLL+WPERMKAP SKRSKG  +LFHRDHGH  Q+CF
Sbjct: 4  KDTPTTVSLEQVLMEIKDQRLLKWPERMKAPPSKRSKGQYWLFHRDHGHATQDCF 58

BLAST of MC05g0895 vs. NCBI nr
Match: XP_022159192.1 (uncharacterized protein LOC111025612 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 2.60e-19
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1   KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
           K+TPTTVPL+QVLMEIKDQRLL+WPE MKAP +KRSKG   LFHRDHGH   +CF
Sbjct: 83  KYTPTTVPLEQVLMEIKDQRLLKWPETMKAPPNKRSKGRYCLFHRDHGHATLDCF 137

BLAST of MC05g0895 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 3.77e-19
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1   KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
           K+TPTTVP++QVLMEIKDQRLL+WPERMKA S+KRSKG   LFHRDHGH  Q+CF
Sbjct: 398 KYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCF 452

BLAST of MC05g0895 vs. NCBI nr
Match: XP_022156748.1 (uncharacterized protein LOC111023587 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 4.79e-18
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 2  HTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
          +T TT+PL+QVLMEIKDQRLL+WPERMKAPS+KRSKG   LFHRDH H  Q+CF
Sbjct: 2  YTLTTIPLEQVLMEIKDQRLLKWPERMKAPSTKRSKGRYCLFHRDHDHATQDCF 55

BLAST of MC05g0895 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 6.40e-18
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1   KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
           K+TPTTVPL+QVLMEIKDQRLL+WPERMK PS+KRSKG   LFHRDH H  Q+ F
Sbjct: 182 KYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLFHRDHNHATQDYF 236

BLAST of MC05g0895 vs. ExPASy TrEMBL
Match: A0A6J1DP33 (uncharacterized protein LOC111022886 OS=Momordica charantia OX=3673 GN=LOC111022886 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.10e-20
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 1  KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKG--YLFHRDHGHTIQNCF 53
          K TPTTV L+QVLMEIKDQRLL+WPERMKAP SKRSKG  +LFHRDHGH  Q+CF
Sbjct: 4  KDTPTTVSLEQVLMEIKDQRLLKWPERMKAPPSKRSKGQYWLFHRDHGHATQDCF 58

BLAST of MC05g0895 vs. ExPASy TrEMBL
Match: A0A6J1DZ52 (uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025612 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.26e-19
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1   KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
           K+TPTTVPL+QVLMEIKDQRLL+WPE MKAP +KRSKG   LFHRDHGH   +CF
Sbjct: 83  KYTPTTVPLEQVLMEIKDQRLLKWPETMKAPPNKRSKGRYCLFHRDHGHATLDCF 137

BLAST of MC05g0895 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.82e-19
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1   KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
           K+TPTTVP++QVLMEIKDQRLL+WPERMKA S+KRSKG   LFHRDHGH  Q+CF
Sbjct: 398 KYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCF 452

BLAST of MC05g0895 vs. ExPASy TrEMBL
Match: A0A6J1DRG9 (uncharacterized protein LOC111023587 OS=Momordica charantia OX=3673 GN=LOC111023587 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.32e-18
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 2  HTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
          +T TT+PL+QVLMEIKDQRLL+WPERMKAPS+KRSKG   LFHRDH H  Q+CF
Sbjct: 2  YTLTTIPLEQVLMEIKDQRLLKWPERMKAPSTKRSKGRYCLFHRDHDHATQDCF 55

BLAST of MC05g0895 vs. ExPASy TrEMBL
Match: A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.10e-18
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1   KHTPTTVPLKQVLMEIKDQRLLRWPERMKAPSSKRSKGY--LFHRDHGHTIQNCF 53
           K+TPTTVPL+QVLMEIKDQRLL+WPERMK PS+KRSKG   LFHRDH H  Q+ F
Sbjct: 182 KYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLFHRDHNHATQDYF 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022155873.14.33e-2080.00uncharacterized protein LOC111022886 [Momordica charantia][more]
XP_022159192.12.60e-1976.36uncharacterized protein LOC111025612 [Momordica charantia][more]
XP_022158830.13.77e-1978.18uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022156748.14.79e-1875.93uncharacterized protein LOC111023587 [Momordica charantia][more]
XP_022159368.16.40e-1876.36uncharacterized protein LOC111025785 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DP332.10e-2080.00uncharacterized protein LOC111022886 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DZ521.26e-1976.36uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DWY01.82e-1978.18uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DRG92.32e-1875.93uncharacterized protein LOC111023587 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DYL63.10e-1876.36uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g0895.1MC05g0895.1mRNA