MC05g0874 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g0874
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein RALF-like 9
LocationMC05: 7912889 .. 7913110 (-)
RNA-Seq ExpressionMC05g0874
SyntenyMC05g0874
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTACTGTCTCGAGGAGAAGCATCTTCATCTTTATCTGCATTCTCGTACTTAGCATCGACATGATCGAGATTACAAATGCGACGAGAAACCTTTTTCGTAGGCATAAAAAGGATCGCGATGAAGCTAAGCGATGTAGTCCAAAACATCCTCAACTTTGCGAATCAAATTTTCTTACTACCCCGAATGTAGAACATTGTAATTCAAGCGGTCGTTGTAGAGGA

mRNA sequence

ATTACTGTCTCGAGGAGAAGCATCTTCATCTTTATCTGCATTCTCGTACTTAGCATCGACATGATCGAGATTACAAATGCGACGAGAAACCTTTTTCGTAGGCATAAAAAGGATCGCGATGAAGCTAAGCGATGTAGTCCAAAACATCCTCAACTTTGCGAATCAAATTTTCTTACTACCCCGAATGTAGAACATTGTAATTCAAGCGGTCGTTGTAGAGGA

Coding sequence (CDS)

ATTACTGTCTCGAGGAGAAGCATCTTCATCTTTATCTGCATTCTCGTACTTAGCATCGACATGATCGAGATTACAAATGCGACGAGAAACCTTTTTCGTAGGCATAAAAAGGATCGCGATGAAGCTAAGCGATGTAGTCCAAAACATCCTCAACTTTGCGAATCAAATTTTCTTACTACCCCGAATGTAGAACATTGTAATTCAAGCGGTCGTTGTAGAGGA

Protein sequence

ITVSRRSIFIFICILVLSIDMIEITNATRNLFRRHKKDRDEAKRCSPKHPQLCESNFLTTPNVEHCNSSGRCRG
Homology
BLAST of MC05g0874 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 1.35e-06
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 4  SRRSIFIFICILVLSIDMIEITNATRNL-FRRHKKDRDEAKRCSPKHPQLCESNFLTTPN 63
          S+ ++ IFI +L +SI+MIEITNAT  + +   KK+RD    CSP HP LC++     P 
Sbjct: 2  SKGTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLV--CSPTHPDLCKTT-PANPY 61

Query: 64 VEHCNSSGRCRG 74
             CN   RCRG
Sbjct: 62 QRGCNPIDRCRG 70

BLAST of MC05g0874 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 50.4 bits (119), Expect = 9.86e-06
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 0

Query: 10 IFICILVLSIDMIEITNATRNL-FRRHKKDRDEAKRCSPKHPQLCESNFLTTPNVEHCNS 69
          IFI +L +SI+MIEITNAT  + +   KK+RD    CSP HP LC+      P    CN 
Sbjct: 3  IFIVVLFVSINMIEITNATHYINYDPLKKNRDLV--CSPTHPDLCKK-IPANPYQRGCNP 62

Query: 70 SGRCRG 74
            RCRG
Sbjct: 63 IDRCRG 65

BLAST of MC05g0874 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 49.3 bits (116), Expect = 6.13e-05
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 3  VSRRSIFIFICILVLSIDMIEITNATRNLFRRHKKDRDEAKRCSPKHPQLCESNFLTTPN 62
          +S+ S+FIF+ IL+  + MI+ITNATR +     +  D +  CSP HP+LC+ +    P 
Sbjct: 3  ISKGSMFIFVGILLYCMGMIDITNATRFIHYDPLRG-DVSPGCSPTHPELCKLHSAN-PY 62

Query: 63 VEHCNSSGRCRG 74
             C S  RCRG
Sbjct: 63 KRGCTSIDRCRG 72

BLAST of MC05g0874 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.52e-07
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 4  SRRSIFIFICILVLSIDMIEITNATRNL-FRRHKKDRDEAKRCSPKHPQLCESNFLTTPN 63
          S+ ++ IFI +L +SI+MIEITNAT  + +   KK+RD    CSP HP LC++     P 
Sbjct: 2  SKGTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLV--CSPTHPDLCKTT-PANPY 61

Query: 64 VEHCNSSGRCRG 74
             CN   RCRG
Sbjct: 62 QRGCNPIDRCRG 70

BLAST of MC05g0874 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.97e-05
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 3  VSRRSIFIFICILVLSIDMIEITNATRNLFRRHKKDRDEAKRCSPKHPQLCESNFLTTPN 62
          +S+ S+FIF+ IL+  + MI+ITNATR +     +  D +  CSP HP+LC+ +    P 
Sbjct: 3  ISKGSMFIFVGILLYCMGMIDITNATRFIHYDPLRG-DVSPGCSPTHPELCKLHSAN-PY 62

Query: 63 VEHCNSSGRCRG 74
             C S  RCRG
Sbjct: 63 KRGCTSIDRCRG 72

BLAST of MC05g0874 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.96e-04
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0

Query: 4  SRRSIFIFICILVLSIDMIEITNATRNLFRRHKKDRDEAKRCSPKHPQLCESNFLTTPNV 63
          S+R   +FI IL++S DMI ITNA + +        D +  CSP HP+LC       P  
Sbjct: 4  SKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSAN-PYQ 63

Query: 64 EHCNSSGRCR 73
            CN   RCR
Sbjct: 64 RGCNRIDRCR 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022961577.11.35e-0645.83protein RALF-like 9 [Cucurbita moschata][more]
XP_023546462.19.86e-0648.48protein RALF-like 9 [Cucurbita pepo subsp. pepo][more]
XP_022159360.16.13e-0541.67uncharacterized protein LOC111025777 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1HAJ86.52e-0745.83protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1[more]
A0A6J1DYH72.97e-0541.67uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A0A0L8B19.96e-0440.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g0874.1MC05g0874.1mRNA