MC05g0853 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g0853
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionProtein RETICULATA, chloroplastic
LocationMC05: 7480819 .. 7481013 (-)
RNA-Seq ExpressionMC05g0853
SyntenyMC05g0853
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGGAAATCATTAGATCATTTGTTCCTGCACTGCGCCTTCACAAACTCTCTATGGCCGCACCTATTTCACATTTTCCATCTCTCCACTGTGCTCCCTAAATCCGTCGACAATTTTCTTTTAGAGAGCCTCTCAAAGACTCCAAATTGTAAGAAAAACATCTTGTGGTGTAATGCCATTGCTTCTCTACAGTGG

mRNA sequence

GAGAGGAAATCATTAGATCATTTGTTCCTGCACTGCGCCTTCACAAACTCTCTATGGCCGCACCTATTTCACATTTTCCATCTCTCCACTGTGCTCCCTAAATCCGTCGACAATTTTCTTTTAGAGAGCCTCTCAAAGACTCCAAATTGTAAGAAAAACATCTTGTGGTGTAATGCCATTGCTTCTCTACAGTGG

Coding sequence (CDS)

GAGAGGAAATCATTAGATCATTTGTTCCTGCACTGCGCCTTCACAAACTCTCTATGGCCGCACCTATTTCACATTTTCCATCTCTCCACTGTGCTCCCTAAATCCGTCGACAATTTTCTTTTAGAGAGCCTCTCAAAGACTCCAAATTGTAAGAAAAACATCTTGTGGTGTAATGCCATTGCTTCTCTACAGTGG

Protein sequence

ERKSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNILWCNAIASLQW
Homology
BLAST of MC05g0853 vs. NCBI nr
Match: RVX20160.1 (Protein RETICULATA, chloroplastic [Vitis vinifera])

HSP 1 Score: 54.3 bits (129), Expect = 1.90e-06
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 3   KSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKN-ILWCNAIA 62
           +S+DHLFLHC  TN LW  LF++  +S V P+S+++ L+ S     N  +  ILW  A  
Sbjct: 476 ESIDHLFLHCPVTNGLWHRLFNLVGVSWVPPRSIEDMLVISFKGLGNSVRGKILWQIACL 535

Query: 63  SLQW 65
           +L W
Sbjct: 536 TLIW 539

BLAST of MC05g0853 vs. NCBI nr
Match: RVX00839.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 53.1 bits (126), Expect = 4.72e-06
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 3   KSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNI-LWCNAIA 62
           +++DHLFLHC+ T  LW  LF +  +  V P+S+ N L  + + + + K+ I LW +A  
Sbjct: 297 ETVDHLFLHCSLTMGLWHKLFQLAKMDWVPPRSISNMLSTNFNGSGSSKRGIVLWQDACI 356

Query: 63  SLQW 65
           +L W
Sbjct: 357 ALMW 360

BLAST of MC05g0853 vs. NCBI nr
Match: RVW96169.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 52.4 bits (124), Expect = 8.94e-06
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 1   ERKSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNILWCNAI 60
           E +S+DH+ LHC  T SLW  LF +F +S VLP S+   LL  L      ++  +W +  
Sbjct: 490 EEESIDHILLHCVLTRSLWSLLFSLFGVSWVLPSSIREALLGWLGPCVGKERKKVWFSTP 549

Query: 61  ASLQW 65
             L W
Sbjct: 550 LCLFW 554

BLAST of MC05g0853 vs. NCBI nr
Match: RVW30962.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 52.0 bits (123), Expect = 1.21e-05
Identity = 25/65 (38.46%), Postives = 34/65 (52.31%), Query Frame = 0

Query: 1   ERKSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNILWCNAI 60
           E +S+DH+ LHC    SLW  LF +F +S VLP SV   LL         ++  +W +A 
Sbjct: 332 EEESIDHILLHCGLARSLWSLLFSLFRVSWVLPSSVREALLGWFGPCVGKERKKVWLSAP 391

Query: 61  ASLQW 65
             L W
Sbjct: 392 LCLFW 396

BLAST of MC05g0853 vs. NCBI nr
Match: CAN80093.1 (hypothetical protein VITISV_010721 [Vitis vinifera])

HSP 1 Score: 52.0 bits (123), Expect = 1.24e-05
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 0

Query: 3   KSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNI-LWCNAIA 62
           +++DHLFLHC+ T  LW  LF    +  V P+S+ + L  + +   + K+ I LW NA  
Sbjct: 912 ETVDHLFLHCSLTMGLWHRLFQSVKMDWVSPRSISDMLSSNFNGFGSSKRGIVLWQNACI 971

Query: 63  SLQW 65
           +L W
Sbjct: 972 ALMW 975

BLAST of MC05g0853 vs. ExPASy TrEMBL
Match: A0A438KG54 (Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.20e-07
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 3   KSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKN-ILWCNAIA 62
           +S+DHLFLHC  TN LW  LF++  +S V P+S+++ L+ S     N  +  ILW  A  
Sbjct: 476 ESIDHLFLHCPVTNGLWHRLFNLVGVSWVPPRSIEDMLVISFKGLGNSVRGKILWQIACL 535

Query: 63  SLQW 65
           +L W
Sbjct: 536 TLIW 539

BLAST of MC05g0853 vs. ExPASy TrEMBL
Match: A0A438IVR5 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_684 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.29e-06
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 3   KSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNI-LWCNAIA 62
           +++DHLFLHC+ T  LW  LF +  +  V P+S+ N L  + + + + K+ I LW +A  
Sbjct: 297 ETVDHLFLHCSLTMGLWHKLFQLAKMDWVPPRSISNMLSTNFNGSGSSKRGIVLWQDACI 356

Query: 63  SLQW 65
           +L W
Sbjct: 357 ALMW 360

BLAST of MC05g0853 vs. ExPASy TrEMBL
Match: A0A5B7C971 (zf-RVT domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_046615 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.14e-06
Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 1  ERKSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNILWCNAI 60
          E +S+DHLF+HC+F+ ++W  LF +F L  V+P+SV   LL          K  LW  + 
Sbjct: 26 EAESVDHLFIHCSFSQNVWNMLFSLFGLQWVMPRSVKELLLAWEGTRVRKDKKQLWKASP 85

Query: 61 ASLQW 65
            + W
Sbjct: 86 LCIFW 90

BLAST of MC05g0853 vs. ExPASy TrEMBL
Match: A0A438IHR4 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_176 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.33e-06
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 1   ERKSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNILWCNAI 60
           E +S+DH+ LHC  T SLW  LF +F +S VLP S+   LL  L      ++  +W +  
Sbjct: 490 EEESIDHILLHCVLTRSLWSLLFSLFGVSWVLPSSIREALLGWLGPCVGKERKKVWFSTP 549

Query: 61  ASLQW 65
             L W
Sbjct: 550 LCLFW 554

BLAST of MC05g0853 vs. ExPASy TrEMBL
Match: A0A438D6D7 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_752 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.87e-06
Identity = 25/65 (38.46%), Postives = 34/65 (52.31%), Query Frame = 0

Query: 1   ERKSLDHLFLHCAFTNSLWPHLFHIFHLSTVLPKSVDNFLLESLSKTPNCKKNILWCNAI 60
           E +S+DH+ LHC    SLW  LF +F +S VLP SV   LL         ++  +W +A 
Sbjct: 332 EEESIDHILLHCGLARSLWSLLFSLFRVSWVLPSSVREALLGWFGPCVGKERKKVWLSAP 391

Query: 61  ASLQW 65
             L W
Sbjct: 392 LCLFW 396

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RVX20160.11.90e-0642.19Protein RETICULATA, chloroplastic [Vitis vinifera][more]
RVX00839.14.72e-0637.50putative ribonuclease H protein [Vitis vinifera][more]
RVW96169.18.94e-0638.46Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW30962.11.21e-0538.46putative ribonuclease H protein [Vitis vinifera][more]
CAN80093.11.24e-0537.50hypothetical protein VITISV_010721 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
A0A438KG549.20e-0742.19Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1[more]
A0A438IVR52.29e-0637.50Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_684 P... [more]
A0A5B7C9713.14e-0636.92zf-RVT domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=D... [more]
A0A438IHR44.33e-0638.46Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A438D6D75.87e-0638.46Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_752 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g0853.1MC05g0853.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0050789 regulation of biological process
cellular_component GO:0005622 intracellular anatomical structure
molecular_function GO:0016740 transferase activity