MC05g0535 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0535
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	photosystem I reaction center subunit II, chloroplastic
Location	MC05: 4054713 .. 4055327 (-)
RNA-Seq Expression	MC05g0535
Synteny	MC05g0535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCGGCTCAAGCAACCCTCTTCACCCCCTCCCTCTCCACCCCCAAATCCGCCGTCAAAATCCCATGGAAGCAATCCCCAGCTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCACATCCGCCCCCCGATTGGTCAAGATCGCCGCCGAGGCCGAGGCCACCACGGAGGCCCCGGCCGGATTCTCCCCGCCGGAGCTCGACCCTAGTACCCCCTCCCCGATCTTCGCCGGCAGCACCGGGGGCCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATTACATGGGAGTCCCCGAAGGAGCAGATCTTCGAGATGCCCACCGGCGGCGCCGCCATCATGAGGGAGGGCCCCAATTTGCTGAAATTGGCCAGGAAAGAGCAGTGCCTTGCTCTGGGAACCAGGCTGCGCTCCAAGTACAAGATCAAGTACCAATTCTACAGGATGTTCCCCAATGGGGAGGTTCAGTATTTGCATCCCAAAGATGGCGTGTACCCTGAGAAGGTCAACCCTGGGCGCCAAGGCGTGGGGCAGAACTTCAGATCCATTGGGAAGAATATCAGCCCCATTGAGGTGAAGTTCACTGGCAAACAAGTGTATGACTTG

mRNA sequence

ATGGCCATGGCGGCTCAAGCAACCCTCTTCACCCCCTCCCTCTCCACCCCCAAATCCGCCGTCAAAATCCCATGGAAGCAATCCCCAGCTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCACATCCGCCCCCCGATTGGTCAAGATCGCCGCCGAGGCCGAGGCCACCACGGAGGCCCCGGCCGGATTCTCCCCGCCGGAGCTCGACCCTAGTACCCCCTCCCCGATCTTCGCCGGCAGCACCGGGGGCCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATTACATGGGAGTCCCCGAAGGAGCAGATCTTCGAGATGCCCACCGGCGGCGCCGCCATCATGAGGGAGGGCCCCAATTTGCTGAAATTGGCCAGGAAAGAGCAGTGCCTTGCTCTGGGAACCAGGCTGCGCTCCAAGTACAAGATCAAGTACCAATTCTACAGGATGTTCCCCAATGGGGAGGTTCAGTATTTGCATCCCAAAGATGGCGTGTACCCTGAGAAGGTCAACCCTGGGCGCCAAGGCGTGGGGCAGAACTTCAGATCCATTGGGAAGAATATCAGCCCCATTGAGGTGAAGTTCACTGGCAAACAAGTGTATGACTTG

Coding sequence (CDS)

ATGGCCATGGCGGCTCAAGCAACCCTCTTCACCCCCTCCCTCTCCACCCCCAAATCCGCCGTCAAAATCCCATGGAAGCAATCCCCAGCTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCACATCCGCCCCCCGATTGGTCAAGATCGCCGCCGAGGCCGAGGCCACCACGGAGGCCCCGGCCGGATTCTCCCCGCCGGAGCTCGACCCTAGTACCCCCTCCCCGATCTTCGCCGGCAGCACCGGGGGCCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATTACATGGGAGTCCCCGAAGGAGCAGATCTTCGAGATGCCCACCGGCGGCGCCGCCATCATGAGGGAGGGCCCCAATTTGCTGAAATTGGCCAGGAAAGAGCAGTGCCTTGCTCTGGGAACCAGGCTGCGCTCCAAGTACAAGATCAAGTACCAATTCTACAGGATGTTCCCCAATGGGGAGGTTCAGTATTTGCATCCCAAAGATGGCGTGTACCCTGAGAAGGTCAACCCTGGGCGCCAAGGCGTGGGGCAGAACTTCAGATCCATTGGGAAGAATATCAGCCCCATTGAGGTGAAGTTCACTGGCAAACAAGTGTATGACTTG

Protein sequence

MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNISPIEVKFTGKQVYDL

Homology

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BLAST of MC05g0535 vs. ExPASy Swiss-Prot
Match: P32869 (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.5e-99
Identity = 184/207 (88.89%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKP-LKPTSAPRLVKIAAEAEATT 60
           MAMA QATLFTPSLSTPKS  + IPWKQS  LSFL SKP LK  S+ R  K++AEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNISPIEVKFTGKQVYDL 206
           VGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of MC05g0535 vs. ExPASy Swiss-Prot
Match: P29302 (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.8e-87
Identity = 169/208 (81.25%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPT-SAPRLVKIAAEAEAT-- 60
           MAMA QA+LFTP+LS PKS+   PWKQS  L+  + K LK T SAPR ++  AE  AT  
Sbjct: 1   MAMATQASLFTPALSAPKSSA--PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATKE 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  AEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQ 180
           REG NLLKLARKEQCLALGTRLRSKYKI Y+FYR+FPNGEVQYLHPKDGVYPEKVN GRQ
Sbjct: 121 REGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQ 180

Query: 181 GVGQNFRSIGKNISPIEVKFTGKQVYDL 206
           GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of MC05g0535 vs. ExPASy Swiss-Prot
Match: P12372 (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.1e-86
Identity = 169/210 (80.48%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPT-SAPRLVK-IAAEAEATT 60
           MAMA QA+LFTP LS PKS    PWKQS  +SF   K LK T S  R ++ +A EA A T
Sbjct: 1   MAMATQASLFTPPLSVPKSTT-APWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAAT 60

Query: 61  E---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           E   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  EEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYR+FPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 RQGVGQNFRSIGKNISPIEVKFTGKQVYDL 206
           R+GVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 REGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of MC05g0535 vs. ExPASy Swiss-Prot
Match: P12353 (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 307.4 bits (786), Expect = 1.2e-82
Identity = 164/216 (75.93%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 1   MAMAAQATLFTP-SLSTPK---SAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEA 60
           MAMA QATLF+P SLS+ K   + +   +KQ  A++F +    KP S    ++ AA AE 
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS----KPASRHHSIRAAAAAEG 60

Query: 61  -------TTEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120
                  T EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM
Sbjct: 61  KAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120

Query: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYP 180
           PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FP+GEVQYLHPKDGVYP
Sbjct: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYP 180

Query: 181 EKVNPGRQGVGQNFRSIGKNISPIEVKFTGKQVYDL 206
           EKVNPGRQGVG N RSIGKN+SPIEVKFTGKQ YDL
Sbjct: 181 EKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of MC05g0535 vs. ExPASy Swiss-Prot
Match: Q9S7H1 (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=psaD1 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.9e-77
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 51  AAEAEATTEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 110
           AA A AT EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMP
Sbjct: 54  AAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 113

Query: 111 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPE 170
           TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYR+FPNGEVQYLHPKDGVYPE
Sbjct: 114 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPE 173

Query: 171 KVNPGRQGVGQNFRSIGKNISPIEVKFTGKQVYDL 206
           K NPGR+GVG N RSIGKN+SPIEVKFTGKQ YDL
Sbjct: 174 KANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of MC05g0535 vs. NCBI nr
Match: XP_022137805.1 (photosystem I reaction center subunit II, chloroplastic [Momordica charantia])

HSP 1 Score: 406 bits (1044), Expect = 6.89e-143
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEA 60
           MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEA
Sbjct: 1   MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEA 60

Query: 61  PAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG 120
           PAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG
Sbjct: 61  PAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG 120

Query: 121 PNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQGVG 180
           PNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGRQGVG
Sbjct: 121 PNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVG 180

Query: 181 QNFRSIGKNISPIEVKFTGKQVYDL 205
           QNFRSIGKNISPIEVKFTGKQVYDL
Sbjct: 181 QNFRSIGKNISPIEVKFTGKQVYDL 205

[Close]

BLAST of MC05g0535 vs. NCBI nr
Match: XP_038876164.1 (photosystem I reaction center subunit II, chloroplastic [Benincasa hispida])

HSP 1 Score: 375 bits (963), Expect = 1.65e-130
Identity = 188/207 (90.82%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKP-LKPTSAPRLVKIAAEAEATT 60
           MAMAAQATLFTPSLSTPKS A+ +PWKQSP LSF+NSKP LKP S+ R +K++AEAEA  
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNISPIEVKFTGKQVYDL 205
           VGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of MC05g0535 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 370 bits (951), Expect = 1.16e-128
Identity = 189/208 (90.87%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKPL-KPTSAPRLVKIAAEAEAT- 60
           MAMAAQATLFTPSLSTPKS AV IPWKQS  LSF+NSKPL KP ++ R+VK++AEAEA  
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
           TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQ 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNISPIEVKFTGKQVYDL 205
           GVGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of MC05g0535 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370 bits (950), Expect = 1.70e-128
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKPL-KPTSAPRLVKIAAEAEAT- 60
           MAMAAQATLFTPSLSTPKS AV IPWKQS  LSF+NSKPL KP ++ R+VK++AEAEA  
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  -TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
            TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGQNFRSIGKNISPIEVKFTGKQVYDL 205
           +GVGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of MC05g0535 vs. NCBI nr
Match: KAG7018694.1 (Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (950), Expect = 1.70e-128
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSA-VKIPWKQSPALSFLNSKPL-KPTSAPRLVKIAAEAEAT- 60
           MAMAAQATLFTPSLSTPKSA V IPWKQS  LSF+NSKPL KP ++ R+VK++AEAEA  
Sbjct: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  -TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
            TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGQNFRSIGKNISPIEVKFTGKQVYDL 205
           +GVGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of MC05g0535 vs. ExPASy TrEMBL
Match: A0A6J1C7Q1 (photosystem I reaction center subunit II, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009152 PE=3 SV=1)

HSP 1 Score: 406 bits (1044), Expect = 3.34e-143
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEA 60
           MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEA
Sbjct: 1   MAMAAQATLFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEA 60

Query: 61  PAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG 120
           PAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG
Sbjct: 61  PAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG 120

Query: 121 PNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQGVG 180
           PNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGRQGVG
Sbjct: 121 PNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVG 180

Query: 181 QNFRSIGKNISPIEVKFTGKQVYDL 205
           QNFRSIGKNISPIEVKFTGKQVYDL
Sbjct: 181 QNFRSIGKNISPIEVKFTGKQVYDL 205

[Close]

BLAST of MC05g0535 vs. ExPASy TrEMBL
Match: A0A6J1GWF9 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457767 PE=3 SV=1)

HSP 1 Score: 370 bits (951), Expect = 5.60e-129
Identity = 189/208 (90.87%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKPL-KPTSAPRLVKIAAEAEAT- 60
           MAMAAQATLFTPSLSTPKS AV IPWKQS  LSF+NSKPL KP ++ R+VK++AEAEA  
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
           TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQ 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNISPIEVKFTGKQVYDL 205
           GVGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of MC05g0535 vs. ExPASy TrEMBL
Match: A0A6J1ICA2 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474178 PE=3 SV=1)

HSP 1 Score: 369 bits (947), Expect = 2.20e-128
Identity = 186/207 (89.86%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATT- 60
           MAMAAQATLFTPSL+TPKS A  +PWKQSP LSFLN+KPL   S+ RLVK++AEAEA   
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           +GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNISPIEVKFTGKQVYDL 205
           VGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of MC05g0535 vs. ExPASy TrEMBL
Match: A0A5D3D399 (Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00340 PE=3 SV=1)

HSP 1 Score: 369 bits (946), Expect = 3.12e-128
Identity = 186/207 (89.86%), Postives = 195/207 (94.20%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKP-LKPTSAPRLVKIAAEAEATT 60
           MAMA QATLFTPSLSTPKS A+ IPWKQSP LSFL SKP LK  S+ R +K++AEAEA  
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNISPIEVKFTGKQVYDL 205
           VGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of MC05g0535 vs. ExPASy TrEMBL
Match: A0A1S3AXN9 (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=3 SV=1)

HSP 1 Score: 369 bits (946), Expect = 3.12e-128
Identity = 186/207 (89.86%), Postives = 195/207 (94.20%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKS-AVKIPWKQSPALSFLNSKP-LKPTSAPRLVKIAAEAEATT 60
           MAMA QATLFTPSLSTPKS A+ IPWKQSP LSFL SKP LK  S+ R +K++AEAEA  
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR+FPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNISPIEVKFTGKQVYDL 205
           VGQNFRSIGKN+SPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of MC05g0535 vs. TAIR 10
Match: AT4G02770.1 (photosystem I subunit D-1 )

HSP 1 Score: 288.5 bits (737), Expect = 4.2e-78
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 51  AAEAEATTEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 110
           AA A AT EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMP
Sbjct: 54  AAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 113

Query: 111 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPE 170
           TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYR+FPNGEVQYLHPKDGVYPE
Sbjct: 114 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPE 173

Query: 171 KVNPGRQGVGQNFRSIGKNISPIEVKFTGKQVYDL 206
           K NPGR+GVG N RSIGKN+SPIEVKFTGKQ YDL
Sbjct: 174 KANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of MC05g0535 vs. TAIR 10
Match: AT1G03130.1 (photosystem I subunit D-2 )

HSP 1 Score: 287.3 bits (734), Expect = 9.4e-78
Identity = 149/204 (73.04%), Postives = 165/204 (80.88%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSAVKIPWKQSPALSFLNSKPLKPTSAPRLVKIAAEAEATTEAP 62
           MA QA  +F+P+++T  SAVK     S +    +    K        + ++ A A  EAP
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAP 60

Query: 63  AGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGP 122
            GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGP
Sbjct: 61  VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGP 120

Query: 123 NLLKLARKEQCLALGTRLRSKYKIKYQFYRMFPNGEVQYLHPKDGVYPEKVNPGRQGVGQ 182
           NLLKLARKEQCLALGTRLRSKYKI YQFYR+FPNGEVQYLHPKDGVYPEK NPGR+GVG 
Sbjct: 121 NLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGL 180

Query: 183 NFRSIGKNISPIEVKFTGKQVYDL 206
           N RSIGKN+SPIEVKFTGKQ YDL
Sbjct: 181 NMRSIGKNVSPIEVKFTGKQSYDL 204

The following BLAST results are available for this feature:

BLAST of MC05g0535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32869	1.5e-99	88.89	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
P29302	4.8e-87	81.25	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
P12372	4.1e-86	80.48	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
P12353	1.2e-82	75.93	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9S7H1	5.9e-77	89.68	Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of MC05g0535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137805.1	6.89e-143	99.51	photosystem I reaction center subunit II, chloroplastic [Momordica charantia]	[more]
XP_038876164.1	1.65e-130	90.82	photosystem I reaction center subunit II, chloroplastic [Benincasa hispida]	[more]
XP_022955930.1	1.16e-128	90.87	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_023528925.1	1.70e-128	90.43	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]
KAG7018694.1	1.70e-128	90.43	Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of MC05g0535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7Q1	3.34e-143	99.51	photosystem I reaction center subunit II, chloroplastic OS=Momordica charantia O...	[more]
A0A6J1GWF9	5.60e-129	90.87	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1ICA2	2.20e-128	89.86	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A5D3D399	3.12e-128	89.86	Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3AXN9	3.12e-128	89.86	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]

BLAST of MC05g0535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02770.1	4.2e-78	89.68	photosystem I subunit D-1	[more]
AT1G03130.1	9.4e-78	73.04	photosystem I subunit D-2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1470.10	Photosystem I PsaD, reaction center subunit II	coord: 63..205 e-value: 1.4E-76 score: 256.7
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 73..203 e-value: 2.2E-67 score: 224.7
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..205
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	64234	Photosystem I subunit PsaD	coord: 70..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0535.1	MC05g0535.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I