MC05g0520 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g0520
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
LocationMC05: 3957350 .. 3960197 (-)
RNA-Seq ExpressionMC05g0520
SyntenyMC05g0520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGCAGCAAACATATTGGACAGCACAACGTGGTTTCCAGAGTCTTTTGGATCAAGTTCAAACAGCTTCTCAGCGGCTAACTTTCCCAACTCTGGCTTCCCATGCATTCGACAAGCCCCTAACAGAGCGCCCCAGATTGAGATTGTTGGAGAGAATGGCATGTTCTTTATAAAATCATACGCACACTCCACCATTCCAGCACGCCCAAGCAAGTCCACCAAGCTAGCGTAATGCTCTGGCCCTGGCTCTACATTGTACCTTGCTTTCATGGACTCAAAAATCTGCATCCCCCTCTTCAAATCTCCTGCTCTACTGCAAGCTGATAATGCACAGACCAAACTCACGTAACTCGGTGCCATGCCTGCTGCCGATGTCATCTCCTCGAGCAATGCCACGGCCTTGTCTGCGTGTCCTTGGTGTGCATATCCGCCCAACAGTGTATTCCAAGACACCAAATTTTTGTCTGGCATCTCCTTGAAGGCTCGCTCTGCTTCATCAATGCTTCCACATTTTCCATACATGTCAACCAGTGCACTCCCAACAAAGATGTTCTCCTCTACACAAGCCTTGACCGCTAGCGCTTGAACTGACCTCCCCAACTCGATTCCTGAAAGGCCAGCACAGGCACAAAGCACACTCGATACCATAAAATCAATTGGTTTGATGTCTTCTTTCCTCGCTTGCAAGAATAAGCAGCAAGCCTTCTCTTCCTCGTTGTTTTGAATGTAAGCAGCTATCAGAGAGGACCACGAGACGGCATTCCGCTCTCCCATTCTGTCGAAAACCATCCCGGAACATTCGACCTCCCCACATTTCCCATAAAAATCAATCAACCCATTTGAAACAGAGACATTCTGCTCAAAACCACTTCGAATTATGAATCCATGTAGCTGACATCCAGGCTCCAAGCCCAGTTTGTCTGAACAAGCATTGAGAAAAGCACAGAATGTTATGGAATCAGGGCTCCCACCAGCACGAAGTAGCTCAAGAAATGCAATGACGGAATCTTCAGGCCGCCCATGGTGCACGGAATTGGATATATACGCATTCCACGTTTCGAGGTTTCGGTGAGGCATTTCAACAAACACCTTGGATGCGTCCTCGAGAAGACCCAGTTTACTGTACATGTCGAAGGTGCTGCACCCAACGAAGACATCGTTTATTAGTCCCTCCTTAACCGCAAGTGCGTGTATCTGTTTGCCCGACATGGCCATGCGAAGGGAAGTGGAAGCTTTGAGAGCGCAAGGGAAGGTGAAATCATTGGGGCGAACACAGTCGCTTAGCATGTGGGAGAAGTAAAGTAGAGCAGAAGAAAAATGGCCGTTTTGGACGGAGCCGGCGATGAGGGCGGTCCAAGTGACGACGGACCGGCAAGGGGCGAGTCCGAGGACGAGTTCGGCTGAGTCAGGATGATCGAGTTTGGCGTACATATTCACAAGGTGGTTGTAGAGGAAGGAAGGAAGAGGGGTTTGCAAGGTTTTGAGAATCTGGGCGTGGGCTGCTCGGCCGAGAAGCGAAGAACGAGCCGATACGGCCAATTCGACGAGTGAAGCGAGCGAGTTTGGCGAGAGAAATGGCATGGTTGGCTACTGCCGAAGATCATGATCTGTATTGATTAGAATTGATGAAGCAGAAAAAAGAAGAAGAGAGAGCAATTTTGCCATCGTTTCATGTTCGATTGGAGAATCTTCCTCTATGAAGCTACTCCGATTCAGTTGGATTTGGCGGGAATTCCAGAAGCCATAGAACTGAGCTCCATTATTTGAAGATTTATAAAGGCACGAAGCTTTCTTTCTCTCTCTTTCTCTCTCTTTCCATTCAAACAAATTTCCGCTTCTCTCTCCGCTAAATTCTGACATAATTTCTAAATTCAACCGCTCCCTCTCTCTCTCTCCCTCTCTGATAACTAGAGGAGAGAGAAAACTAAGATTTCGAGGGTCTGGAGGACGGAGAAGACGAAGACGAAGCTCAGAGGTTCATCCATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGGCCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAAATGGCCATTCAAAACCAATGGGGCGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACGTCGTTATCCCTTTCCCGGCAGCCATTAAAATTACCTTCTGAATTTTCTTGATTTGCTTCTGTTCTTAATGCGTTATCCTTCTCTTGCAGCTCCTCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAGAGCTTGTTACTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAAACTTCCGCAGTTGCAATTGTTGGATTACGACATTTGAAATTACAATAAGATTAAAAGAGAAGTCCATTCTTGGATGAAAATTCGAGCAGGTAGCAGAGCAATTGATGATGATATACGAAGAACATTTGCAGGGAAGTCGCTAGAAAATAGAATCAATGTTCATAAGAAAAAACATCGGCATCGCATTGCCAAGGGCTTGAAGGCTGGTAGAATTCAGAAATGTTATGGGAATTCTTATGATTAAGTTCAAAATTCAAACACTGTAAATGGAATATTCATTCATCATCCTCCATGTTTTAAATATTTTGATAAAAAAAAAAAAAGAGTTTTGAAGAGGGTGATAAAATATAGGTTAGATTATATTATTATTTTTAATACCACAAATTGGGATATGGGTTCTAACTTTTGGGGAGGAGTAGGTGTTAGTTATAGTTGAGTTATTTTTTTTATCACTTTCGTAATATATTTTAGATTAAATATA

mRNA sequence

GTTGCAGCAAACATATTGGACAGCACAACGTGGTTTCCAGAGTCTTTTGGATCAAGTTCAAACAGCTTCTCAGCGGCTAACTTTCCCAACTCTGGCTTCCCATGCATTCGACAAGCCCCTAACAGAGCGCCCCAGATTGAGATTGTTGGAGAGAATGGCATGTTCTTTATAAAATCATACGCACACTCCACCATTCCAGCACGCCCAAGCAAGTCCACCAAGCTAGCGTAATGCTCTGGCCCTGGCTCTACATTGTACCTTGCTTTCATGGACTCAAAAATCTGCATCCCCCTCTTCAAATCTCCTGCTCTACTGCAAGCTGATAATGCACAGACCAAACTCACGTAACTCGGTGCCATGCCTGCTGCCGATGTCATCTCCTCGAGCAATGCCACGGCCTTGTCTGCGTGTCCTTGGTGTGCATATCCGCCCAACAGTGTATTCCAAGACACCAAATTTTTGTCTGGCATCTCCTTGAAGGCTCGCTCTGCTTCATCAATGCTTCCACATTTTCCATACATGTCAACCAGTGCACTCCCAACAAAGATGTTCTCCTCTACACAAGCCTTGACCGCTAGCGCTTGAACTGACCTCCCCAACTCGATTCCTGAAAGGCCAGCACAGGCACAAAGCACACTCGATACCATAAAATCAATTGGTTTGATGTCTTCTTTCCTCGCTTGCAAGAATAAGCAGCAAGCCTTCTCTTCCTCGTTGTTTTGAATGTAAGCAGCTATCAGAGAGGACCACGAGACGGCATTCCGCTCTCCCATTCTGTCGAAAACCATCCCGGAACATTCGACCTCCCCACATTTCCCATAAAAATCAATCAACCCATTTGAAACAGAGACATTCTGCTCAAAACCACTTCGAATTATGAATCCATGTAGCTGACATCCAGGCTCCAAGCCCAGTTTGTCTGAACAAGCATTGAGAAAAGCACAGAATGTTATGGAATCAGGGCTCCCACCAGCACGAAGTAGCTCAAGAAATGCAATGACGGAATCTTCAGGCCGCCCATGGTGCACGGAATTGGATATATACGCATTCCACGTTTCGAGGTTTCGGTGAGGCATTTCAACAAACACCTTGGATGCGTCCTCGAGAAGACCCAGTTTACTGTACATGTCGAAGGTGCTGCACCCAACGAAGACATCGTTTATTAGTCCCTCCTTAACCGCAAGTGCGTGTATCTGTTTGCCCGACATGGCCATGCGAAGGGAAGTGGAAGCTTTGAGAGCGCAAGGGAAGGTGAAATCATTGGGGCGAACACAGTCGCTTAGCATGTGGGAGAAGTAAAGTAGAGCAGAAGAAAAATGGCCGTTTTGGACGGAGCCGGCGATGAGGGCGGTCCAAGTGACGACGGACCGGCAAGGGGCGAGTCCGAGGACGAGTTCGGCTGAGTCAGGATGATCGAGTTTGGCGTACATATTCACAAGGTGGTTGTAGAGGAAGGAAGGAAGAGGGGTTTGCAAGGTTTTGAGAATCTGGGCGTGGGCTGCTCGGCCGAGAAGCGAAGAACGAGCCGATACGGCCAATTCGACGAGTGAAGCGAGCGAGTTTGGCGAGAGAAATGGCATGGTTGGCTACTGCCGAAGATCATGATCTGTATTGATTAGAATTGATGAAGCAGAAAAAAGAAGAAGAGAGAGCAATTTTGCCATCGTTTCATGTTCGATTGGAGAATCTTCCTCTATGAAGCTACTCCGATTCAGTTGGATTTGGCGGGAATTCCAGAAGCCATAGAACTGAGCTCCATTATTTGAAGATTTATAAAGAGGAGAGAGAAAACTAAGATTTCGAGGGTCTGGAGGACGGAGAAGACGAAGACGAAGCTCAGAGGTTCATCCATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGGCCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAAATGGCCATTCAAAACCAATGGGGCGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACCTCCTCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAGAGCTTGTTACTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATATACGAAGAACATTTGCAGGGAAGTCGCTAGAAAATAGAATCAATGTTCATAAGAAAAAACATCGGCATCGCATTGCCAAGGGCTTGAAGGCTGGTAGAATTCAGAAATGTTATGGGAATTCTTATGATTAAGTTCAAAATTCAAACACTGTAAATGGAATATTCATTCATCATCCTCCATGTTTTAAATATTTTGATAAAAAAAAAAAAAGAGTTTTGAAGAGGGTGATAAAATATAGGTTAGATTATATTATTATTTTTAATACCACAAATTGGGATATGGGTTCTAACTTTTGGGGAGGAGTAGGTGTTAGTTATAGTTGAGTTATTTTTTTTATCACTTTCGTAATATATTTTAGATTAAATATA

Coding sequence (CDS)

ATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGGCCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAAATGGCCATTCAAAACCAATGGGGCGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACCTCCTCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAGAGCTTGTTACTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATATACGAAGAACATTTGCAGGGAAGTCGCTAG

Protein sequence

MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR
Homology
[Close]
BLAST of MC05g0520 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 30/92 (32.61%), Postives = 55/92 (59.78%), Query Frame = 0 

Query: 23  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESL 82
           A+ +    W  LQ+A++N +GG  S +K+  L   V  +F R+   L ++++E+ L E +
Sbjct: 15  AVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRN-ADLELDEVEDFLGELM 74

Query: 83  LLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 115
           +  F+T +EDGS+ QV++QL  ++    +G R
Sbjct: 75  MNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDR 105

[Close]
BLAST of MC05g0520 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.0e-07
Identity = 29/92 (31.52%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 21  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHE 80
           +  + +    W  LQ+A++N +GG  S +K+  L   V  +F R+   L ++++E+ L E
Sbjct: 13  RAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRN-ADLELDEVEDFLGE 72

Query: 81  SLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG 113
            L   F+T +EDGS+ QV++QL  ++    +G
Sbjct: 73  LLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRG 103

[Close]
BLAST of MC05g0520 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.0e-07
Identity = 29/90 (32.22%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 23  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESL 82
           A+ +    W  LQ+A++N +GG  S +K+  L   V  +F  +   L +E++E+ L E +
Sbjct: 15  AVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFI-ANADLELEEIEDFLGELM 74

Query: 83  LLSFNTEIEDGSIEQVAEQLMMIYEEHLQG 113
              F+T +EDGS+ QV++QL  ++    +G
Sbjct: 75  TTEFDTVVEDGSLPQVSQQLQTMFHHFQKG 103

[Close]
BLAST of MC05g0520 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-05
Identity = 27/90 (30.00%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 23  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESL 82
           A+ +V   W  LQ+A+ N +GG  S QK+  +   +  +F+     L  +++E+ + E +
Sbjct: 15  AVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFT-DNGDLQPDEVEDFISELM 74

Query: 83  LLSFNTEIEDGSIEQVAEQLMMIYEEHLQG 113
              F+T ++DGS+ QVA+Q+  ++++  QG
Sbjct: 75  NNEFDTVVDDGSLPQVAQQVCGMFQQCEQG 103

[Close]
BLAST of MC05g0520 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 26/88 (29.55%), Postives = 45/88 (51.14%), Query Frame = 0 

Query: 21  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHE 80
           +  +S V  +WD L +A++N WGG DS +K   +   V   F   K  +    +E  L  
Sbjct: 33  ELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEK-VVDAALIEETLLY 92

Query: 81  SLLLSFNTEIEDGSIEQVAEQLMMIYEE 109
           +++  F T +ED S   +A +++ IY +
Sbjct: 93  AMIDEFETNVEDDSALPIAVEVINIYND 119

[Close]
BLAST of MC05g0520 vs. NCBI nr
Match: XP_022137757.1 (pre-rRNA-processing protein TSR2 homolog [Momordica charantia])

HSP 1 Score: 226 bits (575), Expect = 2.41e-74
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS
Sbjct: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR
Sbjct: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114

[Close]
BLAST of MC05g0520 vs. NCBI nr
Match: XP_004134444.1 (pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus])

HSP 1 Score: 206 bits (524), Expect = 1.45e-66
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAEQLMMIYEE+L GSR
Sbjct: 61  WFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]
BLAST of MC05g0520 vs. NCBI nr
Match: XP_008438674.1 (PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo] >KAA0049359.1 pre-rRNA-processing protein TSR2-like protein isoform X2 [Cucumis melo var. makuwa] >TYK17199.1 pre-rRNA-processing protein TSR2-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 205 bits (522), Expect = 2.93e-66
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAEQLMMIYEE+L GSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]
BLAST of MC05g0520 vs. NCBI nr
Match: XP_038881388.1 (pre-rRNA-processing protein TSR2 homolog [Benincasa hispida])

HSP 1 Score: 201 bits (512), Expect = 9.83e-65
Identity = 102/114 (89.47%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           ME  DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNLASDVF+
Sbjct: 1   MESIDGLTSTNYKAGSVSSLQKAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLASDVFA 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFS+SKPPLYVEDLE LLHE+LLLSFNTEIEDGSIEQVAEQLMMIYEE+L GSR
Sbjct: 61  WFSQSKPPLYVEDLETLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]
BLAST of MC05g0520 vs. NCBI nr
Match: XP_011650975.1 (pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus])

HSP 1 Score: 201 bits (512), Expect = 1.01e-64
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQ-VAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQ VAEQLMMIYEE+L GSR
Sbjct: 61  WFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQQVAEQLMMIYEENLVGSR 115

[Close]
BLAST of MC05g0520 vs. ExPASy TrEMBL
Match: A0A6J1C959 (pre-rRNA-processing protein TSR2 homolog OS=Momordica charantia OX=3673 GN=LOC111009121 PE=3 SV=1)

HSP 1 Score: 226 bits (575), Expect = 1.17e-74
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS
Sbjct: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR
Sbjct: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114

[Close]
BLAST of MC05g0520 vs. ExPASy TrEMBL
Match: A0A0A0L7I9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146640 PE=3 SV=1)

HSP 1 Score: 206 bits (524), Expect = 7.03e-67
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAEQLMMIYEE+L GSR
Sbjct: 61  WFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]
BLAST of MC05g0520 vs. ExPASy TrEMBL
Match: A0A5D3D3A3 (Pre-rRNA-processing protein TSR2-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00450 PE=3 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.42e-66
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAEQLMMIYEE+L GSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]
BLAST of MC05g0520 vs. ExPASy TrEMBL
Match: A0A1S3AWZ6 (pre-rRNA-processing protein TSR2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=3 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.42e-66
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAEQLMMIYEE+L GSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]
BLAST of MC05g0520 vs. ExPASy TrEMBL
Match: A0A1S3AX32 (pre-rRNA-processing protein TSR2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=3 SV=1)

HSP 1 Score: 201 bits (510), Expect = 9.92e-65
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60
           MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQ-VAEQLMMIYEEHLQGSR 114
           WFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQ VAEQLMMIYEE+L GSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQQVAEQLMMIYEENLVGSR 115

[Close]
BLAST of MC05g0520 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-27
Identity = 61/96 (63.54%), Postives = 77/96 (80.21%), Query Frame = 0 

Query: 18  SGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENL 77
           S LQ  I  + SRW GLQMA++NQWGG DS +KS  LA ++F   S+S   + VE++ENL
Sbjct: 29  SVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSN-VITVEEIENL 88

Query: 78  LHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGS 114
           LHESLLLSFNTEIEDGSIE+VAEQLM+++EEHL+G+
Sbjct: 89  LHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRGT 123

[Close]
BLAST of MC05g0520 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 0 

Query: 20  LQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENL-- 79
           L+  I  +  RW  ++ A++N WGGRDS  K+    + VF +F +SK P  V+D+E L  
Sbjct: 15  LKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP--VKDIEKLGD 74

Query: 80  LHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGS 114
           L +  L   NT  EDGS+++VA  L+ +YE+   G+
Sbjct: 75  LLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGN 108

The following BLAST results are available for this feature:
BLAST of MC05g0520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3T0901.6e-0732.61Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1[more]
Q969E88.0e-0731.52Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV... [more]
Q8C8T88.0e-0732.22Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S... [more]
Q3KRG33.4e-0530.00Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=... [more]
Q066722.2e-0429.55Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508... [more]
BLAST of MC05g0520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137757.12.41e-74100.00pre-rRNA-processing protein TSR2 homolog [Momordica charantia][more]
XP_004134444.11.45e-6691.23pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus][more]
XP_008438674.12.93e-6691.23PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo] >K... [more]
XP_038881388.19.83e-6589.47pre-rRNA-processing protein TSR2 homolog [Benincasa hispida][more]
XP_011650975.11.01e-6490.43pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus][more]
BLAST of MC05g0520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C9591.17e-74100.00pre-rRNA-processing protein TSR2 homolog OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0L7I97.03e-6791.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146640 PE=3 SV=1[more]
A0A5D3D3A31.42e-6691.23Pre-rRNA-processing protein TSR2-like protein isoform X2 OS=Cucumis melo var. ma... [more]
A0A1S3AWZ61.42e-6691.23pre-rRNA-processing protein TSR2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=L... [more]
A0A1S3AX329.92e-6590.43pre-rRNA-processing protein TSR2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483... [more]
BLAST of MC05g0520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G22510.14.2e-2763.54Pre-rRNA-processing protein TSR2, conserved region [more]
AT5G27990.11.5e-1138.54Pre-rRNA-processing protein TSR2, conserved region [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 21..100
e-value: 7.0E-23
score: 81.0
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 8..113
NoneNo IPR availablePANTHERPTHR21250:SF4PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEINcoord: 8..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g0520.1MC05g0520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005634 nucleus