MC05g0238 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0238
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L18-like
Location	MC05: 1686168 .. 1687599 (-)
RNA-Seq Expression	MC05g0238
Synteny	MC05g0238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATGGCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACGATAGAGTACGCCTTCTCTCTTTTACTCAAGTTTCGGCCACGCATTTCCCAATCTTCCCGCAATAAAATTTCTTTCTTCATATAATACAATCACGTTTTCGAAGAAGGATGGAAATTCTTCGAAACCCAGCGCGAATACTACTTCGCCAACGATCGCTGACAAATTATGTCGAGTTGTTTGTCCTTTTTTTTTTCCCGAAGAACGTGGCATTCGAACTCCATAGACTGTTTTGATGGACGCCCTTTCGGACTATGCAGCCATGGTGTTCGATGAAATGTCTAGTCGAATTGATTCTTCCATCGACGAAGTGTCTAATCTGTGTTCTCACCACTATAATTGAAAATTGGCGTCAACACCTACTAAACAAGTCGTTGAATCGCATCATGACCTACAAATTTTCTATTTCTAGTTTTAATAATCGAGTAAGAAAAGGGATTTTCAAGAAGGGAAAAGGTTCTCTGTCTAAGATTTCATTGCAGTAGAATTATGGCAACTGAAACCGAATTCTTCTAAAGGAATGGACGGGAGAGAAAAAGAGAGAAATAATGGAAACTAGAAGTTTTTTCAGCATTAATCACTTGTGAGTCTTATGGGTTCTTGAGGCATGACAGGTCATTCGATACTAAAAATGTAAGTTCTTTCCATGGATTAATGCTCGAAATCAGATTCAAATGTTACAGCTAAATATATGTTTGAAACCATAAGTATAGGTCAGCGAACTATTTAGAAGTTTTAGAACAGACTAAGATGCCAATGACGGATAATCTTTAGATTAAGGTTTAGATACTAAGGCATGCAAGTTTAGGGCCAAACTATAGCTTATTCCACATTTTAATCATCAAAGAAGAAATTACATTACCCAGCTTAATTATGACTTGTATTCGTCTGTAGAATTCTTTCATTCGAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTTCTTTTCGAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGCAACAAGCAAAGTGGTATCGGCAGCAAGTACCAATTCCAAGGATTTAAGGTATTCATTACCATCACCTACTGATGACAATGCATGCCGGATTATAGGGAACATAATTGCAGAGAGATGTAAAGAAGCTGATGTATTTGTAATGTCTTATGAGCCTCCAAAGAGTGAAAGAATTGAAGGGAAAATTGAGATTGTCATTGACACCATTAAGGAGAATGGTATCCTATTCGTC

mRNA sequence

TTGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATGGCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACGATAGAAATTCTTTCATTCGAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTTCTTTTCGAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGCAACAAGCAAAGTGGTATCGGCAGCAAGTACCAATTCCAAGGATTTAAGGTATTCATTACCATCACCTACTGATGACAATGCATGCCGGATTATAGGGAACATAATTGCAGAGAGATGTAAAGAAGCTGATGTATTTGTAATGTCTTATGAGCCTCCAAAGAGTGAAAGAATTGAAGGGAAAATTGAGATTGTCATTGACACCATTAAGGAGAATGGTATCCTATTCGTC

Coding sequence (CDS)

TTGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATGGCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACGATAGAAATTCTTTCATTCGAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTTCTTTTCGAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGCAACAAGCAAAGTGGTATCGGCAGCAAGTACCAATTCCAAGGATTTAAGGTATTCATTACCATCACCTACTGATGACAATGCATGCCGGATTATAGGGAACATAATTGCAGAGAGATGTAAAGAAGCTGATGTATTTGTAATGTCTTATGAGCCTCCAAAGAGTGAAAGAATTGAAGGGAAAATTGAGATTGTCATTGACACCATTAAGGAGAATGGTATCCTATTCGTC

Protein sequence

LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILFV

Homology

[Close]

BLAST of MC05g0238 vs. ExPASy Swiss-Prot
Match: Q9CQL5 (39S ribosomal protein L18, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl18 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-07
Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 0


Query: 13  RLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRRSRGEAAKRPN 72
           +L  GF    TS S P+  P +    +   AP F+  +  +       R+ RG A   PN
Sbjct: 16  KLECGFAALSTS-SVPAVQPDVESKENEAVAPEFTNRNPRNLELLGVARKERGWATVWPN 75

Query: 73  RKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDN 132
           R+ W +          L V  ++  + A V H    +VV +AST    ++  L S  +  
Sbjct: 76  REFWHR----------LRVVKTQHHVEAFVEH-LNGQVVVSASTREWAIKKHLYSTRNVV 135

Query: 133 ACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 181
           AC  IG ++A+RC EA +  M Y+P   E     I+ + + + E+G++
Sbjct: 136 ACESIGRVLAQRCLEAGINFMVYQPTPWEASSDSIKRLQNAMTESGVM 171

[Close]

BLAST of MC05g0238 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.3e-06
Identity = 36/121 (29.75%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 61  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD 120
           RR+R   AK    KS +           L VF +   I+A+V+  + S+V++AAST   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 121 LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 180
           +R  LP+  +  A +++G +IAER K A V  ++++     +  G+++ + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLK 117

Query: 181 F 182
           F
Sbjct: 129 F 117

[Close]

BLAST of MC05g0238 vs. ExPASy Swiss-Prot
Match: B5ZYV1 (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 63  SRGEA-AKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDL 122
           SR EA A+R NR     ++    RP  L V  S + I+A+V+     K ++AAST  KDL
Sbjct: 3   SRKEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDL 62

Query: 123 RYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILF 182
           R SL +  D  A  ++G ++AER  +A V  + ++   +    G+I+ + D  +E G+ F
Sbjct: 63  RGSLKTGADTAAAALVGKLVAERASKAGVTDVVFD-RGAFIYHGRIKALADAAREGGLTF 120

[Close]

BLAST of MC05g0238 vs. ExPASy Swiss-Prot
Match: Q9H0U6 (39S ribosomal protein L18, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL18 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 40/155 (25.81%), Postives = 72/155 (46.45%), Query Frame = 0


Query: 26  SWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRRSRGEAAKRPNRKSWKQRTDMYMR 85
           S P++ P++    +   AP F+  +  +    +  R+ RG     P+R+ W +       
Sbjct: 28  SEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREFWHR------- 87

Query: 86  PFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERC 145
              L V  ++  + A V H+   KVV +AST    ++  L S  +  AC  IG ++A+RC
Sbjct: 88  ---LRVIRTQHHVEALVEHQ-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRC 147

Query: 146 KEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 181
            EA +  M Y+P   E     ++ +   + E G++
Sbjct: 148 LEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVV 171

[Close]

BLAST of MC05g0238 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 31/121 (25.62%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 69  KRPNRKSWKQRTDMYMRPFV--------LDVFFSRRFIHAKVMHRATSKVVSAASTNSKD 128
           K+ ++K+ +Q+  + +R  V        L VF S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 129 LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 182
           L+  L    D+NA + +G +IAE+ KE  +  + ++     +  GK++ + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of MC05g0238 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 360 bits (923), Expect = 4.62e-125
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWT 60
           LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWT
Sbjct: 10  LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWT 69

Query: 61  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD 120
           RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD
Sbjct: 70  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD 129

Query: 121 LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 180
           LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL
Sbjct: 130 LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 189

Query: 181 FV 182
           FV
Sbjct: 190 FV 191

[Close]

BLAST of MC05g0238 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 299 bits (765), Expect = 5.40e-101
Identity = 153/181 (84.53%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 2   SSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTR 61
           SSSASA RP+A LL+GFIQKPTSLSWPSSF KL ISF AI AP  STH R S I++AWTR
Sbjct: 10  SSSASAFRPTATLLSGFIQKPTSLSWPSSFSKLSISFVAIKAPSLSTHHRKSLIQSAWTR 69

Query: 62  RSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDL 121
           RSRGEAAKR NRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDL
Sbjct: 70  RSRGEAAKRGNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDL 129

Query: 122 RYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILF 181
           RYSL SPTD+NACRIIGN+IAERCKEADVFVMSY+PP  ERI+GKI IVIDTIK+NGILF
Sbjct: 130 RYSLLSPTDENACRIIGNLIAERCKEADVFVMSYDPPDMERIQGKIGIVIDTIKKNGILF 189

[Close]

BLAST of MC05g0238 vs. NCBI nr
Match: XP_022974979.1 (uncharacterized protein LOC111473828 [Cucurbita maxima])

HSP 1 Score: 292 bits (748), Expect = 2.03e-98
Identity = 149/179 (83.24%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 4   SASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRRS 63
           SAS   PSA LL+GFIQKPTSLSWPSSF KL I+      PP STH+RNS I+AAWTRRS
Sbjct: 15  SASLHPPSATLLSGFIQKPTSLSWPSSFSKLSIAIK----PPPSTHNRNSIIQAAWTRRS 74

Query: 64  RGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRY 123
           RGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDLRY
Sbjct: 75  RGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRY 134

Query: 124 SLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILFV 182
           SLPSPTDDNACRIIGN+IAERCKEADVFV+SY+PPKS +IEGKIEIVID IK+NGILFV
Sbjct: 135 SLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 189

[Close]

BLAST of MC05g0238 vs. NCBI nr
Match: XP_022937699.1 (uncharacterized protein LOC111444022 [Cucurbita moschata])

HSP 1 Score: 288 bits (736), Expect = 1.46e-96
Identity = 150/180 (83.33%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 4   SASALRPSARLLTGFIQKPT-SLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRR 63
           SAS   PSA LL+GFIQKPT SLSWPSSF KL I   AI  P  STH+RNS I+AAWTRR
Sbjct: 15  SASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNRNSIIQAAWTRR 74

Query: 64  SRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLR 123
           SRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDLR
Sbjct: 75  SRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 134

Query: 124 YSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILFV 182
           YSLPSPTDDNACRIIGN+IAERCKEADVFV+SY+PPKS +IEGKIEIVID IK+NGILFV
Sbjct: 135 YSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 191

[Close]

BLAST of MC05g0238 vs. NCBI nr
Match: XP_023540956.1 (uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287 bits (735), Expect = 2.08e-96
Identity = 150/180 (83.33%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 4   SASALRPSARLLTGFIQKPT-SLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRR 63
           SAS   PSA LL+GFIQKPT SLSWPSSF KL I   AI  P  STH+RNS I+AAWTRR
Sbjct: 15  SASLHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNRNSIIQAAWTRR 74

Query: 64  SRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLR 123
           SRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDLR
Sbjct: 75  SRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 134

Query: 124 YSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILFV 182
           YSLPSPTDDNACRIIGN+IAERCKEADVFV+SY+PPKS +IEGKIEIVID IK+NGILFV
Sbjct: 135 YSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 191

[Close]

BLAST of MC05g0238 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 360 bits (923), Expect = 2.23e-125
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWT 60
           LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWT
Sbjct: 10  LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWT 69

Query: 61  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD 120
           RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD
Sbjct: 70  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKD 129

Query: 121 LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 180
           LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL
Sbjct: 130 LRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGIL 189

Query: 181 FV 182
           FV
Sbjct: 190 FV 191

[Close]

BLAST of MC05g0238 vs. ExPASy TrEMBL
Match: A0A6J1IJ40 (uncharacterized protein LOC111473828 OS=Cucurbita maxima OX=3661 GN=LOC111473828 PE=4 SV=1)

HSP 1 Score: 292 bits (748), Expect = 9.82e-99
Identity = 149/179 (83.24%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 4   SASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRRS 63
           SAS   PSA LL+GFIQKPTSLSWPSSF KL I+      PP STH+RNS I+AAWTRRS
Sbjct: 15  SASLHPPSATLLSGFIQKPTSLSWPSSFSKLSIAIK----PPPSTHNRNSIIQAAWTRRS 74

Query: 64  RGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRY 123
           RGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDLRY
Sbjct: 75  RGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRY 134

Query: 124 SLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILFV 182
           SLPSPTDDNACRIIGN+IAERCKEADVFV+SY+PPKS +IEGKIEIVID IK+NGILFV
Sbjct: 135 SLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 189

[Close]

BLAST of MC05g0238 vs. ExPASy TrEMBL
Match: A0A6J1FBY3 (uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC111444022 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 7.08e-97
Identity = 150/180 (83.33%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 4   SASALRPSARLLTGFIQKPT-SLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAAWTRR 63
           SAS   PSA LL+GFIQKPT SLSWPSSF KL I   AI  P  STH+RNS I+AAWTRR
Sbjct: 15  SASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNRNSIIQAAWTRR 74

Query: 64  SRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLR 123
           SRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDLR
Sbjct: 75  SRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 134

Query: 124 YSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILFV 182
           YSLPSPTDDNACRIIGN+IAERCKEADVFV+SY+PPKS +IEGKIEIVID IK+NGILFV
Sbjct: 135 YSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 191

[Close]

BLAST of MC05g0238 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 278 bits (711), Expect = 3.70e-93
Identity = 143/183 (78.14%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAA-W 60
           LS+S      SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STH+  S I+AA W
Sbjct: 3   LSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAAAW 62

Query: 61  TRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSK 120
           TRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN K
Sbjct: 63  TRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCK 122

Query: 121 DLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 180
           DLRYSLPSP+DDNACRIIGN+IAERCKEADVF MSY+PP  ERI+ K+ IVIDTIKENGI
Sbjct: 123 DLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 182

Query: 181 LFV 182
           +FV
Sbjct: 183 IFV 185

[Close]

BLAST of MC05g0238 vs. ExPASy TrEMBL
Match: A0A5A7U4A4 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003310 PE=4 SV=1)

HSP 1 Score: 276 bits (705), Expect = 3.04e-92
Identity = 142/183 (77.60%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRAA-W 60
           LS+S      SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STH+  S I+AA W
Sbjct: 3   LSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAAAW 62

Query: 61  TRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSK 120
           TRRSRGEAAK  N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN K
Sbjct: 63  TRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCK 122

Query: 121 DLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 180
           DLRYSLPSP+DDNACRIIGN+IAERCKEADVF MSY+PP  ERI+ K+ IVIDTIKENGI
Sbjct: 123 DLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 182

Query: 181 LFV 182
           +FV
Sbjct: 183 IFV 185

[Close]

BLAST of MC05g0238 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 222.2 bits (565), Expect = 3.3e-58
Identity = 116/185 (62.70%), Postives = 144/185 (77.84%), Query Frame = 0


Query: 1   LSSSASALRPSARLLT---GFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIRA 60
           L SS  +L P    LT    F +  +++SW SSFPKL I   ++ + P    D  SF++A
Sbjct: 4   LISSTCSLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSVISSPIVKKD--SFVQA 63

Query: 61  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTN 120
           AWTRRSRGEAAKRPNRKSWKQRTDMYMRPF+L+VFFSR+FIHAKVMHR TSKV+S A+TN
Sbjct: 64  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTN 123

Query: 121 SKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKEN 180
           ++D+R ++PS  D+ ACR+IG +IAER  EADV+ +SYEP K ERIEGK+ IVIDTIKE+
Sbjct: 124 ARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEH 183

Query: 181 GILFV 183
           GI+FV
Sbjct: 184 GIIFV 186

[Close]

BLAST of MC05g0238 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 68  AKRPNRK-SWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLP 127
           +K P++  S+KQRT  YM PF LDVF S+RF+ A + HR T + V+ A TNSKD++  L 
Sbjct: 70  SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 129

Query: 128 SPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 180
           S  D  AC  IG I++ER KEADV+  SY P   ++ EGKI  V+ ++ +NGI
Sbjct: 130 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of MC05g0238 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 68  AKRPNRK-SWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLP 127
           +K P++  S+KQRT  YM PF LDVF S+RF+ A + HR T + V+ A TNSKD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 128 SPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 180
           S  D  AC  IG I++ER KEADV+  SY P   ++ EGKI  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of MC05g0238 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-17
Identity = 43/115 (37.39%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 66  EAAKRPNRK-SWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYS 125
           EA K+  R  ++ Q T  +  PF LD++ S+  + A V+HR TSKVV+ A + SKD+++ 
Sbjct: 176 EAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFD 235

Query: 126 LPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 180
           L S  +  AC  +G ++A+R  E D+  + Y P K ++IEGK+++V+  + +NG+
Sbjct: 236 LGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of MC05g0238 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 83  YMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNIIA 142
           Y++P+VL + F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG I+ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 143 ERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 180
           ER    D+  ++ +  K +R  GK++ VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of MC05g0238 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQL5	9.8e-07	27.98	39S ribosomal protein L18, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl18 PE=1...	[more]
Q5P316	8.3e-06	29.75	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
B5ZYV1	1.1e-05	34.17	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
Q9H0U6	1.1e-05	25.81	39S ribosomal protein L18, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL18 PE=1 ...	[more]
A9BG02	1.4e-05	25.62	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]

BLAST of MC05g0238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147050.1	4.62e-125	100.00	uncharacterized protein LOC111016081 [Momordica charantia]	[more]
XP_038905466.1	5.40e-101	84.53	50S ribosomal protein L18-like [Benincasa hispida]	[more]
XP_022974979.1	2.03e-98	83.24	uncharacterized protein LOC111473828 [Cucurbita maxima]	[more]
XP_022937699.1	1.46e-96	83.33	uncharacterized protein LOC111444022 [Cucurbita moschata]	[more]
XP_023540956.1	2.08e-96	83.33	uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC05g0238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZ23	2.23e-125	100.00	uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1IJ40	9.82e-99	83.24	uncharacterized protein LOC111473828 OS=Cucurbita maxima OX=3661 GN=LOC111473828...	[more]
A0A6J1FBY3	7.08e-97	83.33	uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A1S3AVM4	3.70e-93	78.14	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
A0A5A7U4A4	3.04e-92	77.60	50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MC05g0238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	3.3e-58	62.70	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	1.2e-23	48.67	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.2e-23	48.67	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	2.8e-17	37.39	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	4.2e-13	35.05	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 182..182
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 15..181
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 76..179 e-value: 3.81032E-20 score: 78.7359
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 77..179
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 40..182 e-value: 7.5E-19 score: 70.0
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 81..181 e-value: 1.4E-9 score: 38.3
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 15..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0238.1	MC05g0238.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome