MC05g0170 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0170
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase III subunit rpc6-like
Location	MC05: 1180387 .. 1180997 (-)
RNA-Seq Expression	MC05g0170
Synteny	MC05g0170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCTTACCTCGCAAGAAAAAGTGCTCCACGACCTAATTTGCAGCAAGCAGAGCGCGGGGATTTGTACATTCGACATGAAAAGAGAGACAAATTTGACCGAAAGCGTGGTAACCAAATCGCTCAAGTCACTCCAAGCGAAAGGCCTAATAAAATTAGTCCAACACCATCAGAACAGAGGGAAGAAATTGTACCTGTCGAAAGATTTCGAAGCGGCAAAGGCATTAACCGGCGGCGAATGGTACCGCGACGGGAAGCTGGATCGAGAATACATCGAAACTCTTAAAGGAGTGTGTGGAGAATGATTTCGAAGAGGAAGGTGATTACGATGGAAGGAATTGTGGAGTATTTCAAGAGGAGTGGAGCTTCGAAAGTGGAGCAAATTGAAGAGATTGTGAATTCATTGGTGCTGGACCATGAAGTGATGGAGGTGAGGAGCAGTGGATCTGGAGAATTTGATTTTGTTCCTGTAGGGAAGATTTGTTACAAATGCTGTGCCAAAGGAGACCCAAAATGGGAGCAATAGCTTCTGTTCCTTGTGGAGTCTGTCCACGGATTAAACGGCGTCGTTTCGCCTCGGACTTGTGTCTACTACGCCAAGTGGCTAGATTTT

mRNA sequence

AGCCTTACCTCGCAAGAAAAAGTGCTCCACGACCTAATTTGCAGCAAGCAGAGCGCGGGGATTTGTACATTCGACATGAAAAGAGAGACAAATTTGACCGAAAGCGTGGTAACCAAATCGCTCAAGTCACTCCAAGCGAAAGGCCTAATAAAATTAGTCCAACACCATCAGAACAGAGGGAAGAAATTGTACCTGTCGAAAGATTTCGAAGCGGCAAAGGCATTAACCGGCGGCGAATGGTACCGCGACGGGAAGCTGGATCGAGAATACATCGAAACTCTTAAAGGAGTGTGTAGAATGATTTCGAAGAGGAAGGTGATTACGATGGAAGGAATTGTGGAGTATTTCAAGAGGAGTGGAGCTTCGAAAGTGGAGCAAATTGAAGAGATTGTGAATTCATTGGTGCTGGACCATGAAGTGATGGAGGTGAGGAGCAGTGGATCTGGAGAATTTGATTTTGTTCCTGTAGGGAAGATTTGTTACAAATGCTGTGCCAAAGGAGACCCAAAAGGAGCAATAGCTTCTGTTCCTTGTGGAGTCTGTCCACGGATTAACGGCGTCGTTTCGCCTCGGACTTGTGTCTACTACGCCAAGTGGCTAGATTTT

Coding sequence (CDS)

AGCCTTACCTCGCAAGAAAAAGTGCTCCACGACCTAATTTGCAGCAAGCAGAGCGCGGGGATTTGTACATTCGACATGAAAAGAGAGACAAATTTGACCGAAAGCGTGGTAACCAAATCGCTCAAGTCACTCCAAGCGAAAGGCCTAATAAAATTAGTCCAACACCATCAGAACAGAGGGAAGAAATTGTACCTGTCGAAAGATTTCGAAGCGGCAAAGGCATTAACCGGCGGCGAATGGTACCGCGACGGGAAGCTGGATCGAGAATACATCGAAACTCTTAAAGGAGTGTGTAGAATGATTTCGAAGAGGAAGGTGATTACGATGGAAGGAATTGTGGAGTATTTCAAGAGGAGTGGAGCTTCGAAAGTGGAGCAAATTGAAGAGATTGTGAATTCATTGGTGCTGGACCATGAAGTGATGGAGGTGAGGAGCAGTGGATCTGGAGAATTTGATTTTGTTCCTGTAGGGAAGATTTGTTACAAATGCTGTGCCAAAGGAGACCCAAAAGGAGCAATAGCTTCTGTTCCTTGTGGAGTCTGTCCACGGATTAACGGCGTCGTTTCGCCTCGGACTTGTGTCTACTACGCCAAGTGGCTAGATTTT

Protein sequence

SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKRKVITMEGIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGVCPRINGVVSPRTCVYYAKWLDF

Homology

[Close]

BLAST of MC05g0170 vs. ExPASy Swiss-Prot
Match: Q2T9S3 (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-19
Identity = 64/227 (28.19%), Postives = 110/227 (48.46%), Query Frame = 0


Query: 4   SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKL 63
           +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK V+      KK+
Sbjct: 90  NQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 149

Query: 64  YLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKRKVIT--------------- 123
           Y+  + +  +++TGG WY D   + E++E L   C    + K  T               
Sbjct: 150 YMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSS 209

Query: 124 ---MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKIC 183
                 + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      
Sbjct: 210 FASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKL 269

Query: 184 YKCCAKGDPKGAIASVPCGVCPRIN-----GVVSPRTCVYYAKWLDF 203
           Y+  +   P   +   PCG+CP  +     G +SP  C+Y  +WL+F
Sbjct: 270 YRAVSPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of MC05g0170 vs. ExPASy Swiss-Prot
Match: Q86JM3 (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-19
Identity = 58/209 (27.75%), Postives = 112/209 (53.59%), Query Frame = 0


Query: 5   QEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLY 64
           ++ +++ LI +  + G  T ++K  +   +  +TK LK+L+++ LIK V+  Q+  KK+Y
Sbjct: 78  EDFLIYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESRKLIKSVKSIQSGRKKVY 137

Query: 65  LSKDFEAAKALTGGEWYRDGKLDREYIETLK-GVCRMISKRKVITMEGIVEYFKR----- 124
           +  + E ++ +TGG+ Y D   D +YI+ +K  +   +  +  + +  I+ Y ++     
Sbjct: 138 MLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFVDNKGAVDLADIITYLRKVAEEA 197

Query: 125 -SGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVP 184
            S +   E I+ +VN+++ D ++ E+R +  G       G I YK      P     ++P
Sbjct: 198 TSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSG-ILYKPTKTPIPVNNFCNMP 257

Query: 185 CGVCPRI-----NGVVSPRTCVYYAKWLD 202
           CG CP       NG+VSP+ CVY+ ++L+
Sbjct: 258 CGNCPVFDICSDNGLVSPKRCVYFKQYLE 285

[Close]

BLAST of MC05g0170 vs. ExPASy Swiss-Prot
Match: Q9H1D9 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.6e-19
Identity = 64/227 (28.19%), Postives = 109/227 (48.02%), Query Frame = 0


Query: 4   SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKL 63
           +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK V+      KK+
Sbjct: 90  NQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 149

Query: 64  YLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKRKVIT--------------- 123
           Y+  + +  +++TGG WY D   + E++E L   C    + K  T               
Sbjct: 150 YMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSS 209

Query: 124 ---MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKIC 183
                 + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      
Sbjct: 210 FASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKL 269

Query: 184 YKCCAKGDPKGAIASVPCGVCPRIN-----GVVSPRTCVYYAKWLDF 203
           Y+      P   +   PCG+CP  +     G +SP  C+Y  +WL+F
Sbjct: 270 YRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of MC05g0170 vs. ExPASy Swiss-Prot
Match: Q921X6 (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-19
Identity = 64/227 (28.19%), Postives = 108/227 (47.58%), Query Frame = 0


Query: 4   SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKL 63
           +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK V+      KK+
Sbjct: 90  NQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 149

Query: 64  YLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKRKVIT--------------- 123
           Y+  + +  +++TGG WY D   + E++E L   C    + K  T               
Sbjct: 150 YMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSS 209

Query: 124 ---MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKIC 183
                 + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      
Sbjct: 210 FASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKL 269

Query: 184 YKCCAKGDPKGAIASVPCGVCP-----RINGVVSPRTCVYYAKWLDF 203
           Y+      P   +   PCG+CP        G +SP  C+Y  +WL+F
Sbjct: 270 YRAVNPILPPTGVVRAPCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of MC05g0170 vs. ExPASy Swiss-Prot
Match: Q9VD25 (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-15
Identity = 59/225 (26.22%), Postives = 98/225 (43.56%), Query Frame = 0


Query: 4   SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKL 63
           ++EKV++ ++    + GI   D++ ++NL    + K LK+L+ K LIK V+      KK+
Sbjct: 78  NEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKV 137

Query: 64  YLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKRK------------------ 123
           Y+  + E   ++TGG WY+D   + E+++ L   C    + K                  
Sbjct: 138 YMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMS 197

Query: 124 VITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICY 183
             T+  + ++    G SKV      +E I+ ++V D     VR            G   Y
Sbjct: 198 CCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQD---------GSFVY 257

Query: 184 KCCAKGDPKGAIASVPCGVCPRIN-----GVVSPRTCVYYAKWLD 202
           +      P   +  +PCG+CP I      G V+  TC Y   WLD
Sbjct: 258 RAVNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]

BLAST of MC05g0170 vs. NCBI nr
Match: XP_038905079.1 (DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida])

HSP 1 Score: 305 bits (780), Expect = 3.86e-102
Identity = 155/218 (71.10%), Postives = 181/218 (83.03%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQA+GL+K+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQARGLVKMVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++KVIT+EGIVE FK+S
Sbjct: 86  KKFYLSTDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+PVGKICYK C      KG+PK
Sbjct: 146 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPK 205

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+ S+PCGVCPRI     NG++SP TCVYYAKWL+F
Sbjct: 206 TGAMTSIPCGVCPRITDCTENGIISPTTCVYYAKWLNF 243

[Close]

BLAST of MC05g0170 vs. NCBI nr
Match: XP_008448982.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_008448983.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 304 bits (779), Expect = 5.48e-102
Identity = 154/218 (70.64%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 86  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK
Sbjct: 146 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPK 205

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 206 IGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of MC05g0170 vs. NCBI nr
Match: XP_004148278.1 (DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypothetical protein Csa_010347 [Cucumis sativus])

HSP 1 Score: 304 bits (779), Expect = 5.48e-102
Identity = 154/218 (70.64%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 86  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK
Sbjct: 146 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPK 205

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 206 TGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of MC05g0170 vs. NCBI nr
Match: TYK19400.1 (DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa])

HSP 1 Score: 304 bits (779), Expect = 6.28e-102
Identity = 154/218 (70.64%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 30  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 89

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 90  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 149

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK
Sbjct: 150 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPK 209

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 210 IGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 247

[Close]

BLAST of MC05g0170 vs. NCBI nr
Match: XP_008439941.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 303 bits (775), Expect = 2.15e-101
Identity = 153/217 (70.51%), Postives = 180/217 (82.95%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 86  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGDPK- 180
           GA KVE    QIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+    KG+PK 
Sbjct: 146 GAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYKYCSQGGLKGEPKT 205

Query: 181 GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
           GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 206 GAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 242

[Close]

BLAST of MC05g0170 vs. ExPASy TrEMBL
Match: A0A1S3BL06 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 2.65e-102
Identity = 154/218 (70.64%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 86  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK
Sbjct: 146 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPK 205

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 206 IGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of MC05g0170 vs. ExPASy TrEMBL
Match: A0A0A0L5W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 2.65e-102
Identity = 154/218 (70.64%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 86  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK
Sbjct: 146 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPK 205

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 206 TGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of MC05g0170 vs. ExPASy TrEMBL
Match: A0A5D3D7H7 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00330 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 3.04e-102
Identity = 154/218 (70.64%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 30  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 89

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 90  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 149

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK 180
           GA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK
Sbjct: 150 GAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPK 209

Query: 181 -GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
            GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 210 IGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 247

[Close]

BLAST of MC05g0170 vs. ExPASy TrEMBL
Match: A0A1S3AZZ6 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo OX=3656 GN=LOC103484577 PE=3 SV=1)

HSP 1 Score: 303 bits (775), Expect = 1.04e-101
Identity = 153/217 (70.51%), Postives = 180/217 (82.95%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+G
Sbjct: 26  ALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKG 85

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLS DFE AK LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+S
Sbjct: 86  KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQS 145

Query: 121 GASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGDPK- 180
           GA KVE    QIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+    KG+PK 
Sbjct: 146 GAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYKYCSQGGLKGEPKT 205

Query: 181 GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
           GA+AS+PCGVCPRI     NG++SP TCVYY KWLDF
Sbjct: 206 GAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 242

[Close]

BLAST of MC05g0170 vs. ExPASy TrEMBL
Match: A0A6J1D8D1 (DNA-directed RNA polymerase III subunit rpc6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017972 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 2.12e-100
Identity = 153/217 (70.51%), Postives = 179/217 (82.49%), Query Frame = 0


Query: 1   SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRG 60
           +L   EKVL+DLICSKQS GI   D+KRET   +S+VTKSLK+LQAKG+IKLV+H+QN+G
Sbjct: 22  ALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKG 81

Query: 61  KKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-RMISKRKVITMEGIVEYFKRS 120
           KK YLSKDFE +K LTGG WY +GKLDREYI TLKG C RMI K KV T+EGIV+ FK+S
Sbjct: 82  KKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFCGRMIQKMKVATIEGIVDSFKKS 141

Query: 121 GASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKG----DPK- 180
           GASKV    EQI+EIVN+LVLD+EVMEV+S+GSGEFDF+P+GKICYKC AKG    +PK 
Sbjct: 142 GASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKT 201

Query: 181 GAIASVPCGVCPRI-----NGVVSPRTCVYYAKWLDF 202
           GA+AS+PCGVCPRI     NGV+SPRTCVYY KWLDF
Sbjct: 202 GAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF 238

[Close]

BLAST of MC05g0170 vs. TAIR 10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-45
Identity = 96/210 (45.71%), Postives = 133/210 (63.33%), Query Frame = 0


Query: 6   EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYL 65
           EK L DLI   Q  G   F++KRE  +  ++VT+ + SL+ K LIK V +  N+G K YL
Sbjct: 21  EKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLRKKNLIKEVANMNNKGVKHYL 80

Query: 66  SKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKR---KVITMEGIVEYFKRSGAS 125
           + +FE    LTGGEWY DG LD   IE LK  C MI +R   +V+T+E +  YF +    
Sbjct: 81  AMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQRVVTLEVLCGYFVKEEKL 140

Query: 126 KVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAK----GDPK-GAIASVP 185
            V+Q +EI+ +L+LD+ +MEV+S+G  EF    +G++CY+   K    G+P+ GA AS+P
Sbjct: 141 SVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVCYRLTGKKFGNGEPRAGAFASIP 200

Query: 186 CGVCPRI-----NGVVSPRTCVYYAKWLDF 203
           CGVCP I     +GV+SP TCVY+ KWLDF
Sbjct: 201 CGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

The following BLAST results are available for this feature:

BLAST of MC05g0170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2T9S3	1.9e-19	28.19	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=...	[more]
Q86JM3	1.9e-19	27.75	DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=4468...	[more]
Q9H1D9	5.6e-19	28.19	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F P...	[more]
Q921X6	7.3e-19	28.19	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f ...	[more]
Q9VD25	4.9e-15	26.22	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster...	[more]

BLAST of MC05g0170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905079.1	3.86e-102	71.10	DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]	[more]
XP_008448982.1	5.48e-102	70.64	PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_...	[more]
XP_004148278.1	5.48e-102	70.64	DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypot...	[more]
TYK19400.1	6.28e-102	70.64	DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]	[more]
XP_008439941.1	2.15e-101	70.51	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]	[more]

BLAST of MC05g0170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BL06	2.65e-102	70.64	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0L5W6	2.65e-102	70.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=3 SV=1	[more]
A0A5D3D7H7	3.04e-102	70.64	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3AZZ6	1.04e-101	70.51	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1D8D1	2.12e-100	70.51	DNA-directed RNA polymerase III subunit rpc6 isoform X1 OS=Momordica charantia O...	[more]

BLAST of MC05g0170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23710.1	1.2e-45	45.71	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 4..67 e-value: 1.1E-14 score: 56.1
IPR007832	RNA polymerase Rpc34	PFAM	PF05158	RNA_pol_Rpc34	coord: 1..136 e-value: 5.2E-23 score: 82.0
IPR016049	RNA polymerase Rpc34-like	PANTHER	PTHR12780	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	coord: 1..202
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0170.1	MC05g0170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008168	methyltransferase activity