MC05g0107 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0107
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L28
Location	MC05: 736268 .. 741509 (-)
RNA-Seq Expression	MC05g0107
Synteny	MC05g0107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGCTTGAGTTTTATGGGCTTAATCCACTCAATTCTCAGCCCAAACAGCGGTATCCAGCCCAACAATAAAAGCTTATCCCCTTCTTCTGATTTCTGAAACAAAACCAGAGGCCTCCCAAGCGAACAAGATAACGATAACAGAAATTTTACTCGGAAAACAATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTTTCTCACTTCTCAATTGGGTGGCATCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAATCTCCTCTTTTCAACTCTTGTTTAATATTATGCTTTCTGGTATTTGGTCATTCGACCCCTATATCTGCTCTAATTGTATGGCTGAAAATGCAATTTGATCGGAAGCAGCTGGGTGTTTATTCTCATTCTTAATCTGAACCCTTTTATATTTGTATTAGGGATCGAAATCGCCCGATTCTGATTCCATTTGGCTATCTAAAATTGCTATACTAGTCACTGTTTAACTATTGGCTTTGAAATGTTGATTGATGGCTGCTTTCTTTGAATGGTGGGAATGGGAACTATCTCAAACTTGGTTCCGTTATTTGGTTTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGGGAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAAGGAATGATATGGTAATTCATGACTTTAAATTTTACTCTTAGAATTTGGGAAAGAGTCGCCTGATTACAAGATCATGCTGTATCCTGCTATGTTTTTGCTTATCCTTGTTAGTAAATCTGTGTATTTTTAATGACCACGATATTCTTGTATCTTTGCTTTCCCCCATTTGCCAATGAAGCTGGGATCCATCCTCCCTCCTTTCTGGGCTTAATGTTTAGCCAGAGTGATTTTACATGGAACAGATGCTCAGAAATCTTGTATGCAGTTAAGTAATGCAATGATGTTTTCTATGGACATGGCATTATATTAAAAATGGAGAGAGTAGTAATTTCTGGATTTGTAGTGTGGGGAGAAGGTAGACTCCAGAGCAAAACCAGGTTCTAAGGACAGGCATGAATATGATCAAAGAGAAGGTGTCACTTTTAGGTAACTCTAAAGCCTAAATTTTGATGCTTTTGTCAGTATGGTGAGGAATTTTCTTCGTGCTTCATATTTTCTGCTTCATATCAACTCGGGCTGGCCTTCCTCGTAGTTTATTTTAATGTCAAAAGATCTCTGCATCTTGCCTTGCCCTTGAGAACAATCCTTCAGCCCAGAAGGGTTGCAGAGTGCTGTAGCAGATGAAGCAACGAAGAAGTAAACCCAGGTCCTTTAGAAGCCAGGATAATTTCAGGGTACCACGGGACTATGAATACTCATTCCATTTATTGTTTGTCACGTCACTCCTGTAGTATTAGAAAACTTTTCTTTAGAGGCCTATAGGTTAGCTTCATTTGCTGTCACAAACCAAAGATCCCCTCTGATGTTATCTGAAATCAACGATTGCAATATTATCAAATAGTGACAGCAAGCTTTAAAGATCAAATTATTGAAGCCTATATTAGAAGAAGAAGAAGCCGACTCCTCACAGCTTTTTGAATTGTCTCTAATGGCTGGAGAGAAGGATCGGGCGAAAAGTTGGGTCTTACCGTGACGAGTTTGGTAATCTAAAAGGTGAGTTTTACGAGCGTTTCTAATCAGTAATCAGTCTAAAGAGATTGAGAATGGCTGACTGAGAGAGGATCTGGTGAATGAAAATGAGTATGAGAGTCGAGCTTTAACAAATTTGATCAAGTGTTTACTATTTACGTTATTAATTATAATGCTCTCTTATTTTGAAGACAATGATGGGAGTAATTAGAAGAAAATGTGGTAACACTCTATAATTCAATTTTTTTTAGCAAATATATTTTATCTTATAAAAATAGTAATATTGGGTACAACAATTGAATTGAACTTTAATTTGGGAGATAAGCTTTCCTTAATTCCCTTTACGGATTGAACTACTAAATTCTAATGTCTACATTTCTATGAAAGAAAGGGGAGAGTCCAAAAAAAAAAAAATTACACACACAAGAAGATTGGCTAAAAGACTAGCAGTTTATATATTTTCGCTCTTCTATGTACACACTACTTTGTGTCAACCATATAATATTAATTCATCCCAAAAAAAAAAACTAATACTAACGTTCCTAATCCTGAAAAAAAAAATGCAGCAAAGCAAATGAAGATTTGAGTAAAACCTTAGAATGAACAATTAAGACAGAAAGTTCCCACTTCTCTTGACAAGCAAAGAAAGCAAGTTTTCATCATCTGAAAGGTTCAACTGGTGCTGACTCTTCAAGCAAAGTTGCAGCCTCAAAGCACTCAGCAGCCTCCAGCGCCGATGCCCCAACATCAGCTTTATATAACAGCCCGAGATTGTGCCACGCAGATGGGTTTGCTCGGTCAAGTCGAAGGGCGTCGGTTAACAAGCTTCTTACTACAGGAAATGACTGACTGCCACCTAGTCGTTGGAGAAGACAGGCAGTGGATATCAAACTGGGAACATGGCCAGGATCAATGTCCAATGCTTTATTGTATGCCTGCAGGGCATCTTGTGGGAGACCTTTTGACTCATACAGTAAACCTAGCAGATTCATCAAGTTATGAATTCAAATATTAAAGAGATCAAGGCTCGGGGATGTTCTTAATCAATCAATCAAGGCAACGTAAATCCTGATAATAAGTTTGAAAGATGCAACATATGTACTTCATCATTCAGGTAAGAATGTGTGATTTAATTAAACAATGCAATTTCTAGATAGATTCCCATAAAAGTCCAAAACTCCCACACAAGAGAATTGTAACTAAATGCTTTCTGAAGAAGTAACTCAATAAACTCAAACATGGGACTCGCCCTTTACTTGAAAACGAAGAGCAAAGTGGCCACAATCTTATATATACGCTTATGGTCCTTTCTTGAAGTAACCCTATGTATCAGTTTAATTCTCAGAAACTTCCTAAGCAACATGGTAGAATGTGGTTCAAGCATCTGATCCAAAATTAACAGAATGTGTGAGCCTTAGATGGAGAAATATTTGAGTCATTAAATGGGAATGATGTTTTACCTGTGGAGTGCCATTTAGAGGCAGAATACGGATCGATTGCCTGCAATTTTGATAGACAGATCTCAGCATCCCGCCACTGAGACAAGCTTGTGTAAATATTAGCCAAGTCATGCCATGTTTCTGTTTCTAGACTTCGGTCAGATTTTCTCATATCCTGTACGAAGAATATGGATGTGAGTGAAACAACTGAATAAATGAACTAATTACTAATTCAGCTTTATGGTCAGGGTAATAAGTGCGATAAGGCACCAAATCGGGAAACGTTCTGAGATATTTTAAATAACGAAAGAAAATCCAGTTTTCACAAGAACTACAGGGGAACGCCTCTAAGACCTCATCTAATAAGACTTTGATCCATACGAATTTGAGTCCTTTACCTTTGGAAGAATCTTTCCAGTCCCACTACTTTTGGTCCGGACTTGAATTATAGCAAGAAGATGACTATATGTTTCTATACCGCTCTTTAATCGACCCTGTGCAATCTGGAGCTTAGCTTTAGTTCGCAAGAGTTCCCCCTGTTCCCATTTCCCAGTCTGCTCAAGAGCAGCACTCAGTACAGTCTCTGCATCCACAAACCGTTTCTGGGCTGACAATATTCTGGCCAAGAGGACGTAAGACTTCAGACTAGAGCCAGCCTCGAGTTTCACTAGCTGTTTTGCATAGTATAGAGCAATATCCAACTTCCTCTGTTCAGCATATTCAAGGCAAAGATTATATACAATGAATGGATCTCTTTCTCTCATCAGCTGCTCAGCAGTTCGTAGTGCCTCGAGTGCTTCAGACTGCTTCAAAATTCTCCGGGAATCAGAAGCAACTAATTTGGATTTAGCTGACAATAACACACCAAGTAAGCAATTAGCAACAGAAGCCATCTGGATGCATTTACACTGCAGCTCCCGAAGCACTCTCAAAGTGTAACTCACCCCCTCATCAAGACAAACCAAATTTTCCCCACAGAGCTTTGAAGCCAACAACAATTCCAGTAGGCAGTCTACGTTCTCTATGTTATTCAAGAAGTTCTTCAAAAGATTCAAGGCAACTAAGTTTTTACCTTCCCCATAGTAACAAAGTGCCAGGGTGCAGTACTTTTCTTTTCTTCCTATGATTCCTGGAGGCAATCGTTCAACCTCATGAGCTAGAGCTCCAAATTCCCCTGAAATAGACAGCGCAAATGAGAGATGTTCAAGTATTGATGGGTCCCATACTAGCAATCCAAGTATATATTTTCTCATGAGATCCATTAACAGAAGAATGGCCTCTTCCATATTATTTCTTGGCACGAATGAGCTTTCCATCTGTGAACGGAGATTAGGAGGACTTGCATCACAACCACTATAGAGAAGGAATATTGCAAACTCTTTTTCTATTTTTGCTCTGGTTTCCATTTCCAGATTCCATTGATAGAGAAGAGCACGCCTATATGACACGATAGATTCTCCTGGAAATCCGGCAGATTTCCACAGTTCTGGAAGCAATTCAACAGCCTTCGTTAGTGTATCTTGCAATTTACAATCTACACCGAAGTTTTCTGGTAAGCCTTCTGGTAATGAAGATTCAACAGTGTCTAAAATTAGTTTGCATGATTTGGCTGCCTCTGTAGATAGCAACAAAAAGGGAAAATTGTGAATACAGGCTGAAGAAGAAAAAATGATTTAAAATAGAAGCAGGGGGGGAGAGGAGAGGGAATACCTACAAACCTTCCTAAACCCTGTAATGATTTTGCTTTCAGAAAAATAGCTTCAAGAAGTAAACTAATGGCATGCATAGACATAGTAGGCACAACGTCACTTTGTGATTGGCGTCTATTTTGTTCATATCTCGTTGAAATGGAAGCTTTTATCCTTGAAATTACAGCAGCAATATCTATTCCTTCAAAAACATGAAGAGCAG

mRNA sequence

CCCAGCTTGAGTTTTATGGGCTTAATCCACTCAATTCTCAGCCCAAACAGCGGTATCCAGCCCAACAATAAAAGCTTATCCCCTTCTTCTGATTTCTGAAACAAAACCAGAGGCCTCCCAAGCGAACAAGATAACGATAACAGAAATTTTACTCGGAAAACAATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTTTCTCACTTCTCAATTGGGTGGCATCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGGGAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAAGGAATGATATGCAAAGCAAATGAAGATTTGAGTAAAACCTTAGAATGAACAATTAAGACAGAAAGTTCCCACTTCTCTTGACAAGCAAAGAAAGCAAGTTTTCATCATCTGAAAGGTTCAACTGGTGCTGACTCTTCAAGCAAAGTTGCAGCCTCAAAGCACTCAGCAGCCTCCAGCGCCGATGCCCCAACATCAGCTTTATATAACAGCCCGAGATTGTGCCACGCAGATGGGTTTGCTCGGTCAAGTCGAAGGGCGTCGGTTAACAAGCTTCTTACTACAGGAAATGACTGACTGCCACCTAGTCGTTGGAGAAGACAGGCAGTGGATATCAAACTGGGAACATGGCCAGGATCAATGTCCAATGCTTTATTGTATGCCTGCAGGGCATCTTGTGGGAGACCTTTTGACTCATACAGTAAACCTAGCAGATTCATCAAGTTATGAATTCAAATATTAAAGAGATCAAGGCTCGGGGATGTTCTTAATCAATCAATCAAGGCAACGTAAATCCTGATAATAAGTTTGAAAGATGCAACATATGTACTTCATCATTCAGGTAAGAATGTGTGATTTAATTAAACAATGCAATTTCTAGATAGATTCCCATAAAAGTCCAAAACTCCCACACAAGAGAATTGTAACTAAATGCTTTCTGAAGAAGTAACTCAATAAACTCAAACATGGGACTCGCCCTTTACTTGAAAACGAAGAGCAAAGTGGCCACAATCTTATATATACGCTTATGGTCCTTTCTTGAAGTAACCCTATGTATCAGTTTAATTCTCAGAAACTTCCTAAGCAACATGGTAGAATGTGGTTCAAGCATCTGATCCAAAATTAACAGAATGTGTGAGCCTTAGATGGAGAAATATTTGAGTCATTAAATGGGAATGATGTTTTACCTGTGGAGTGCCATTTAGAGGCAGAATACGGATCGATTGCCTGCAATTTTGATAGACAGATCTCAGCATCCCGCCACTGAGACAAGCTTGTGTAAATATTAGCCAAGTCATGCCATGTTTCTGTTTCTAGACTTCGGTCAGATTTTCTCATATCCTGTACGAAGAATATGGATGTGAGTGAAACAACTGAATAAATGAACTAATTACTAATTCAGCTTTATGGTCAGGGTAATAAGTGCGATAAGGCACCAAATCGGGAAACGTTCTGAGATATTTTAAATAACGAAAGAAAATCCAGTTTTCACAAGAACTACAGGGGAACGCCTCTAAGACCTCATCTAATAAGACTTTGATCCATACGAATTTGAGTCCTTTACCTTTGGAAGAATCTTTCCAGTCCCACTACTTTTGGTCCGGACTTGAATTATAGCAAGAAGATGACTATATGTTTCTATACCGCTCTTTAATCGACCCTGTGCAATCTGGAGCTTAGCTTTAGTTCGCAAGAGTTCCCCCTGTTCCCATTTCCCAGTCTGCTCAAGAGCAGCACTCAGTACAGTCTCTGCATCCACAAACCGTTTCTGGGCTGACAATATTCTGGCCAAGAGGACGTAAGACTTCAGACTAGAGCCAGCCTCGAGTTTCACTAGCTGTTTTGCATAGTATAGAGCAATATCCAACTTCCTCTGTTCAGCATATTCAAGGCAAAGATTATATACAATGAATGGATCTCTTTCTCTCATCAGCTGCTCAGCAGTTCGTAGTGCCTCGAGTGCTTCAGACTGCTTCAAAATTCTCCGGGAATCAGAAGCAACTAATTTGGATTTAGCTGACAATAACACACCAAGTAAGCAATTAGCAACAGAAGCCATCTGGATGCATTTACACTGCAGCTCCCGAAGCACTCTCAAAGTGTAACTCACCCCCTCATCAAGACAAACCAAATTTTCCCCACAGAGCTTTGAAGCCAACAACAATTCCAGTAGGCAGTCTACGTTCTCTATGTTATTCAAGAAGTTCTTCAAAAGATTCAAGGCAACTAAGTTTTTACCTTCCCCATAGTAACAAAGTGCCAGGGTGCAGTACTTTTCTTTTCTTCCTATGATTCCTGGAGGCAATCGTTCAACCTCATGAGCTAGAGCTCCAAATTCCCCTGAAATAGACAGCGCAAATGAGAGATGTTCAAGTATTGATGGGTCCCATACTAGCAATCCAAGTATATATTTTCTCATGAGATCCATTAACAGAAGAATGGCCTCTTCCATATTATTTCTTGGCACGAATGAGCTTTCCATCTGTGAACGGAGATTAGGAGGACTTGCATCACAACCACTATAGAGAAGGAATATTGCAAACTCTTTTTCTATTTTTGCTCTGGTTTCCATTTCCAGATTCCATTGATAGAGAAGAGCACGCCTATATGACACGATAGATTCTCCTGGAAATCCGGCAGATTTCCACAGTTCTGGAAGCAATTCAACAGCCTTCGTTAGTGTATCTTGCAATTTACAATCTACACCGAAGTTTTCTGGTAAGCCTTCTGGTAATGAAGATTCAACAGTGTCTAAAATTAGTTTGCATGATTTGGCTGCCTCTGTAGATAGCAACAAAAAGGGAAAATTGTGAATACAGGCTGAAGAAGAAAAAATGATTTAAAATAGAAGCAGGGGGGGAGAGGAGAGGGAATACCTACAAACCTTCCTAAACCCTGTAATGATTTTGCTTTCAGAAAAATAGCTTCAAGAAGTAAACTAATGGCATGCATAGACATAGTAGGCACAACGTCACTTTGTGATTGGCGTCTATTTTGTTCATATCTCGTTGAAATGGAAGCTTTTATCCTTGAAATTACAGCAGCAATATCTATTCCTTCAAAAACATGAAGAGCAG

Coding sequence (CDS)

ATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTTTCTCACTTCTCAATTGGGTGGCATCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGGGAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAAGGAATGA

Protein sequence

MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Homology

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BLAST of MC05g0107 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-47
Identity = 109/149 (73.15%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKIS-SNNSPIPSAPI 60
           MAAS +L  +P N        S  L  +  + SELGFLTSQL GI+IS S   PI S PI
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATV-SELGFLTSQLSGIQISPSPLFPIISKPI 60

Query: 61  SAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
           SAPL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKL
Sbjct: 61  SAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-46
Identity = 91/121 (75.21%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 28  RTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNL 87
           ++KL+SEL F+TSQL G+KISS +    SAP+S P +P+LQPVARR+CPFTGKK+N+ N 
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPVARRICPFTGKKSNRANK 90

Query: 88  VSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 147
           VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL K
Sbjct: 91  VSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 150

Query: 148 E 149
           +
Sbjct: 151 K 151

[Close]

BLAST of MC05g0107 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 9.0e-43
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 18  MAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQP-VARRVCP 77
           M +S+  +   T  + ELGFLTSQL G++IS   S + +  IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINR-ISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

[Close]

BLAST of MC05g0107 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of MC05g0107 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

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BLAST of MC05g0107 vs. NCBI nr
Match: XP_022145908.1 (50S ribosomal protein L28, chloroplastic [Momordica charantia])

HSP 1 Score: 281 bits (718), Expect = 4.69e-95
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 246 bits (628), Expect = 2.47e-81
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MAA VVLG +P  +SGVMAASST+L F TK NSELGFLTSQL GIKISSN+S I  +PIS
Sbjct: 1   MAAFVVLGFTPATSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 245 bits (625), Expect = 7.09e-81
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P ++SGVMAASS++LHFRTK N ELGFL+SQL GIKISSN+S I  +PIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244 bits (623), Expect = 1.43e-80
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P  +SGVMAASS++LHFRTK N ELGFL+SQL GIKISSN+S I S+PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. NCBI nr
Match: XP_022924246.1 (50S ribosomal protein L28, chloroplastic [Cucurbita moschata] >KAG6582404.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (621), Expect = 2.88e-80
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL GIKISSN+S I ++PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. ExPASy TrEMBL
Match: A0A6J1CX73 (50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015252 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 2.27e-95
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 245 bits (625), Expect = 3.43e-81
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P ++SGVMAASS++LHFRTK N ELGFL+SQL GIKISSN+S I  +PIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 1.40e-80
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL GIKISSN+S I ++PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of MC05g0107 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 237 bits (605), Expect = 4.10e-78
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPI 60
           MAASVV G +P  TS GVMA SST+LHFRTK NS+LGFL SQL GIKISSN+S I  +PI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of MC05g0107 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 237 bits (605), Expect = 4.10e-78
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPI 60
           MAASVV G +P  TS GVMA SST+LHFRTK NS+LGFL SQL GIKISSN+S I  +PI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of MC05g0107 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-44
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 18  MAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQP-VARRVCP 77
           M +S+  +   T  + ELGFLTSQL G++IS   S + +  IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINR-ISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

The following BLAST results are available for this feature:

BLAST of MC05g0107 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82245	2.7e-47	73.15	50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P...	[more]
P30956	6.7e-46	75.21	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P...	[more]
O22795	9.0e-43	71.97	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
Q8DG62	3.7e-20	64.00	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972...	[more]
B8HUV7	6.3e-20	64.00	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of MC05g0107 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145908.1	4.69e-95	100.00	50S ribosomal protein L28, chloroplastic [Momordica charantia]	[more]
XP_038885053.1	2.47e-81	89.19	50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S...	[more]
XP_022979375.1	7.09e-81	87.84	50S ribosomal protein L28, chloroplastic [Cucurbita maxima]	[more]
XP_023526300.1	1.43e-80	87.84	50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022924246.1	2.88e-80	87.16	50S ribosomal protein L28, chloroplastic [Cucurbita moschata] >KAG6582404.1 50S ...	[more]

BLAST of MC05g0107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX73	2.27e-95	100.00	50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IT28	3.43e-81	87.84	50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1E916	1.40e-80	87.16	50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7U1W6	4.10e-78	86.00	50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AWK5	4.10e-78	86.00	50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567...	[more]

BLAST of MC05g0107 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33450.1	6.4e-44	71.97	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 73..131 e-value: 1.2E-18 score: 67.0
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 22..148
IPR001383	Ribosomal protein L28	TIGRFAM	TIGR00009	TIGR00009	coord: 73..128 e-value: 2.5E-16 score: 57.9
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 70..146 score: 13.90849
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 72..148 e-value: 1.7E-28 score: 100.4
None	No IPR available	PANTHER	PTHR13528:SF6	50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC	coord: 22..148
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 73..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0107.1	MC05g0107.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome