MC05g0094 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0094
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	C2H2-type domain-containing protein
Location	MC05: 665259 .. 665570 (+)
RNA-Seq Expression	MC05g0094
Synteny	MC05g0094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTC

mRNA sequence

ATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTC

Coding sequence (CDS)

ATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTC

Protein sequence

MTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL

Homology

[Close]

BLAST of MC05g0094 vs. NCBI nr
Match: KGN56847.1 (hypothetical protein Csa_010766 [Cucumis sativus])

HSP 1 Score: 116 bits (291), Expect = 9.57e-30
Identity = 71/119 (59.66%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGINGQQNQF 60
           MTLNDYL     PPSLR YSGAA+DMAH   LPLHPLLAQ PP  RT++AN +N QQNQ 
Sbjct: 128 MTLNDYLTM---PPSLRSYSGAAIDMAHF--LPLHPLLAQPPPLPRTSTANRMNFQQNQA 187

Query: 61  AAGQLGQRM-------------GTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL 104
            AG   Q               G P +E+QPPQDVID+NSEE++C+SD SE LDLTLSL
Sbjct: 188 VAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLSL 241

[Close]

BLAST of MC05g0094 vs. NCBI nr
Match: KAA0049241.1 (hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK17317.1 hypothetical protein E5676_scaffold434G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.34e-28
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGINGQQNQF 60
           MTLNDYL     PPSLR +SGAA+DMAH   LPLHPLLA+ PP  RT++ N +N QQNQ 
Sbjct: 123 MTLNDYLTM---PPSLRSHSGAAIDMAHF--LPLHPLLARPPPLPRTSTPNSMNFQQNQA 182

Query: 61  AA-------------GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL 104
            A             G++ +  G P +EQQPPQDVID++SEE++C+SDGSE LDLTLSL
Sbjct: 183 VARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLSL 236

[Close]

BLAST of MC05g0094 vs. NCBI nr
Match: KAG6597359.1 (hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 7.43e-18
Identity = 62/119 (52.10%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 1   MTLNDYLAQT--RQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGIN---- 60
           +TLN+ L     RQP SLR Y    VDMAH   LPLHPLLAQ PP  R  +ANG+N    
Sbjct: 165 ITLNNCLTMPPPRQPSSLRSYPSPTVDMAHL--LPLHPLLAQPPPPRRITTANGVNEDAA 224

Query: 61  -----GQQNQFAAGQLGQRMGTPTAEQ-QPPQDVIDVNS-EEHECNSDGSEDLDLTLSL 104
                G QNQ   G          AEQ QP Q+VID+NS EE++C+SDGS+ LDLTLSL
Sbjct: 225 GQRWQGNQNQRNNGGARTTSARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL 281

[Close]

BLAST of MC05g0094 vs. ExPASy TrEMBL
Match: A0A0A0L892 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 4.64e-30
Identity = 71/119 (59.66%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGINGQQNQF 60
           MTLNDYL     PPSLR YSGAA+DMAH   LPLHPLLAQ PP  RT++AN +N QQNQ 
Sbjct: 128 MTLNDYLTM---PPSLRSYSGAAIDMAHF--LPLHPLLAQPPPLPRTSTANRMNFQQNQA 187

Query: 61  AAGQLGQRM-------------GTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL 104
            AG   Q               G P +E+QPPQDVID+NSEE++C+SD SE LDLTLSL
Sbjct: 188 VAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLSL 241

[Close]

BLAST of MC05g0094 vs. ExPASy TrEMBL
Match: A0A5A7U6I9 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001720 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 6.51e-29
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGINGQQNQF 60
           MTLNDYL     PPSLR +SGAA+DMAH   LPLHPLLA+ PP  RT++ N +N QQNQ 
Sbjct: 123 MTLNDYLTM---PPSLRSHSGAAIDMAHF--LPLHPLLARPPPLPRTSTPNSMNFQQNQA 182

Query: 61  AA-------------GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL 104
            A             G++ +  G P +EQQPPQDVID++SEE++C+SDGSE LDLTLSL
Sbjct: 183 VARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLSL 236

The following BLAST results are available for this feature:

BLAST of MC05g0094 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g0094 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56847.1	9.57e-30	59.66	hypothetical protein Csa_010766 [Cucumis sativus]	[more]
KAA0049241.1	1.34e-28	57.14	hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK173...	[more]
KAG6597359.1	7.43e-18	52.10	hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC05g0094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L892	4.64e-30	59.66	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 P...	[more]
A0A5A7U6I9	6.51e-29	57.14	C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of MC05g0094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0094.1	MC05g0094.1	mRNA