MC04g_new0527 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0527
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC04: 21338897 .. 21341144 (+)
RNA-Seq Expression	MC04g_new0527
Synteny	MC04g_new0527

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCGCTAATTTTTTTTTTTTTTGGGTAATATAGTCCTTGAAAGCCAGATCCAAAAGTCTATCCTGGAATTGGAGAGAATGAGACGTGCAATATTGACCTCTCACCTATTTTTCTTCCTTATCATTGCAACATTCGTCTCTTCAGATCTGGCATCAAAATTAACTACACACTACGTGAATATTCAACCATCTCCACCGCCGATACTTCCTTATCATCCCTATCCTCCTCCGGCCAACTGCAGGCAGGGTTCACCGCCGCCGCCTCCGCCGCCTAAGAAGCCATGGCCACCAAGGTACACCCGTAAAGCACCTCCACCTCCTTTCTAATACTACTACTCTTACTCTCTTTAATTTGCATCATGTAATTAGCTAAATTAATTAGCTTTGTTTCATCTTTGTGGAACATGTTATCGATTTTCTTTCTTTTTCTTTCTTTGGGTTGTTGAAGATATTTCGGATGGTAAGAGATATTTTATCTACTAGACGGTTGATTTTTTTTATTTTCTTAGTTGGAATAATTATATGCTCTAATCAGTCGAAGAATATATATTCAAGTTGAATTAGAAAGTGATAATTTCTTTTCTTTTCTTTTTTTATTTTTATTATCAATTTAGCAAATGTAAAATGGAGATTCTTCCCCATCAAAATGCATCCTTCGAAACGAGAACTATCTTCCATCTGGGCTTGTTCTTAAGATTTATTATTATTATTGTTATTATTATTATTATTTTGAAAGAGTAAAAGGCGAAGGGAGAGAGAAGGGTGAGATGCAAACAAAACAGGGAATTATGGAGGTTCAATTATTCAGCTCACGAAGTCAATATCGGTGGTTGCAAATAAAATAAGACCATCTTTATCCCATCAATTTTTTAACTTTACAAAATGATTTTTTTATTTAAAATTTAAAATTTTAAAGATCTCCGTTTGATCAATTTTTCATATATATATATATTTTTTATAGAGAAAAAAAAGAGGGCCTGATATAAAAGTGAGTTACATCATAATTACAGAAAGGGTTTTTCATGACCAAGAGTAGAAATCCTGATAGCCTCCCAAATGTCTGAAAAAGATTTTGTGGAATCGGTGAAGGTTTGTTGTTTCTCACTAGTCAAGTGTGATACAGAGGAGAACCAAAAGTATTGCACCACAATATATATTACGCTAGTTTTGTAAGCAGGAAGGACATATTTTCTCTGATGAAAAGTTCTATTTATGCAGGGAACATGAGAACTTTTTGAAAAATCCCAAAAAAAAAAAAGATGATACCCTAGAGCTGTTGTGAAAGGGCAGCGGATAAATCAACTAGTATTTTTAGAAAAATTATAAAAATAAAAAGAAATTATAAAAATTATTTAAATTAACAAATAAATATTACTCGTTTAAATAAAGTTAAATCTTATATTGTTATTATTTTTTTAACAATTTTTATCGATAAAAATATCGATTCACTCTCTCTATATATCGTGCCTATAGAGATTGATGTGGACAAAATTTAATGGCTTGGGATAAGACTTTGAATAAGAGTGGTAGCGGTCGGGGCCAATGCAGCGTTGGACCAAAAAGGAAGTTTGAATTATTATACGCGGAATAAGCCTATAAATGAATGAAGCTCTTCTCTTCATTCTTCAACACCAAAATGAAAACTAAAATTAAAATGGAGTCTTCAATTTCCACTCTTCTCTTTGTTTCTTTATTACTATTCTTTTCTTCTCTAACTTTTCCGTCGTCCGCCGCCGCCGCAATCTCCCTTCACTCTCCTCCTCCGCCGCCTCTCAGAATGCCACGCCCGGTTTACAAGTCACCACCTCCGCCTCCCATGGCGTCACCGCCGCCGCCGAAGTTTCAGTGGCCGCGCAATTTCATGTCTAAACGAACACCACCTCCTGCCTTCTGAATTAATTAATTAGCTTCATCGCAATAAATAATTTCCACTTGTTATAATGATAAATTTGTTTTTTTTTTCCACCCTTCATTTTCTGCTTAATTGATGTAGCTTCAAATTTTCGTTGAGATTCAACAGATTCCGGTGTCGGATAGATGTAATTTATTTGGGTCTAATTCAATTCGCTGAATTTTTCTTTTAAGATTTTTTAGTTCGGACCAATTTGGTGGCGTCAGCGGCTCGGCTTTAAACTACATACCGGTTCGGTTTGATTTTTCAATAATAAGATATTTATCATCAATTCGATTTTGGTTTGACTATAAAATCGAGGTGGACTGAACTGCTTACGCCTGTAATTAATATTAG

mRNA sequence

ATGAGACGTGCAATATTGACCTCTCACCTATTTTTCTTCCTTATCATTGCAACATTCGTCTCTTCAGATCTGGCATCAAAATTAACTACACACTACGTGAATATTCAACCATCTCCACCGCCGATACTTCCTTATCATCCCTATCCTCCTCCGGCCAACTGCAGGCAGGGTTCACCGCCGCCGCCTCCGCCGCCTAAGAAGCCATGGCCACCAAGAATGCCACGCCCGGTTTACAAGTCACCACCTCCGCCTCCCATGGCGTCACCGCCGCCGCCGAAGTTTCAGTGGCCGCGCAATTTCATGTCTAAACGAACACCACCTCCTGCCTTCTGA

Coding sequence (CDS)

ATGAGACGTGCAATATTGACCTCTCACCTATTTTTCTTCCTTATCATTGCAACATTCGTCTCTTCAGATCTGGCATCAAAATTAACTACACACTACGTGAATATTCAACCATCTCCACCGCCGATACTTCCTTATCATCCCTATCCTCCTCCGGCCAACTGCAGGCAGGGTTCACCGCCGCCGCCTCCGCCGCCTAAGAAGCCATGGCCACCAAGAATGCCACGCCCGGTTTACAAGTCACCACCTCCGCCTCCCATGGCGTCACCGCCGCCGCCGAAGTTTCAGTGGCCGCGCAATTTCATGTCTAAACGAACACCACCTCCTGCCTTCTGA

Protein sequence

MRRAILTSHLFFFLIIATFVSSDLASKLTTHYVNIQPSPPPILPYHPYPPPANCRQGSPPPPPPPKKPWPPRMPRPVYKSPPPPPMASPPPPKFQWPRNFMSKRTPPPAF

Homology

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BLAST of MC04g_new0527 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.09e-06
Identity = 48/109 (44.04%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 6   LTSHLFFFLIIATFVSSDLASKLTTHYV------NIQPSPPPILPYHPYPPPANCRQGSP 65
           L S+LF  LI   F+  +L SKLT HY+      N+    PP LP    PPP  CRQG+P
Sbjct: 6   LASYLFSLLIAFFFL--NLPSKLTAHYIHQSSSTNLYEYGPPPLPL--LPPPPICRQGAP 65

Query: 66  PPPPPPKKPWPPRMPRPVYKSPPPPPMASPPPPKFQWPRNFMSKRTPPP 108
           PP    KK               P P  SPPPPKF+WPR F  K  PPP
Sbjct: 66  PPA---KK----------QNKLKPLPSLSPPPPKFKWPRRFTPKSPPPP 97

The following BLAST results are available for this feature:

BLAST of MC04g_new0527 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0527 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69	3.09e-06	44.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]

BLAST of MC04g_new0527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0527.1	MC04g_new0527.1	mRNA