MC04g_new0512 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0512
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 21034060 .. 21034977 (+)
RNA-Seq ExpressionMC04g_new0512
SyntenyMC04g_new0512
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCGCAAAAAGGAAATTACGTAGCAGCTTCCGATGTCAACTTCTCCCTCCATAGTATTATTAGAACTTGAAGTGAGTTGTTTTGTTGATGAATTAAGCTCAAGAGAAGAGAAAAAGGAAAACAGAGACAAAAATTAGCGAGCAATGGGATCCAGAATCACGCCTGCGGACAATCGGGTGCTCGTGATTTTCAAATCCGGATCAATCGCCGGGAATCCGATCGCCGTCGACGGGGCGGAGGCTGGTTCGAAGAATCCGGTGGGACCGAAACTGGCCGTGAAGGTGAAGCCCAAAGGAGAATCGACTTATGTGGTGGCGCCGGCGCCGCCGGTAACGTCGGACCCGGCGCCCGAAATGGCGATTGGGTATAGCGTACGCCGCGGCCACGGCGGCGGAAAGTTCAAAACTGTGATTCCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCATTCCATAAAGGATTTCGTTAAATCCTTCTTTCGTCCGCTGCCGCCGGAGCTCCACAACCGCCGTACACCTAATAGCCAAGATTTAGCATAATGTTCAGCTCAGATGCCTGTTTTTCATTTTTGTTCTTTGTTTTGGGGTTTTTTTTTCCCTCTGTTTTATTATAGGGAGAGAACAGAGTATTTTGCCCTGTTCTTGACAATTACAGAAAGATGAAATACAATATAGTTCTATCTTTTTGTTGGCTCTTATTCCAGTTGATATTGTCAAGCCGTTGTCCAAGTGAATTAAAACGCAGACACTTGACAAACCCTGCCGGAAAAAGAAAAAAAAAAAATCCAACCGGTCTCGGACCGGACCATCTTTTTTTCTATTGAATGTTATTTTTCAAAAATTAAATTAGTGACAAAAATCAACGGCTTCACTTCCAATTCCAAATAGTTCGCCTTGTGCAAGTTTAATATGCG

mRNA sequence

ATGGGATCCAGAATCACGCCTGCGGACAATCGGGTGCTCGTGATTTTCAAATCCGGATCAATCGCCGGGAATCCGATCGCCGTCGACGGGGCGGAGGCTGGTTCGAAGAATCCGGTGGGACCGAAACTGGCCGTGAAGGTGAAGCCCAAAGGAGAATCGACTTATGTGGTGGCGCCGGCGCCGCCGGTAACGTCGGACCCGGCGCCCGAAATGGCGATTGGGTATAGCGTACGCCGCGGCCACGGCGGCGGAAAGTTCAAAACTGTGATTCCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCATTCCATAAAGGATTTCGTTAAATCCTTCTTTCGTCCGCTGCCGCCGGAGCTCCACAACCGCCGTACACCTAATAGCCAAGATTTAGCATAA

Coding sequence (CDS)

ATGGGATCCAGAATCACGCCTGCGGACAATCGGGTGCTCGTGATTTTCAAATCCGGATCAATCGCCGGGAATCCGATCGCCGTCGACGGGGCGGAGGCTGGTTCGAAGAATCCGGTGGGACCGAAACTGGCCGTGAAGGTGAAGCCCAAAGGAGAATCGACTTATGTGGTGGCGCCGGCGCCGCCGGTAACGTCGGACCCGGCGCCCGAAATGGCGATTGGGTATAGCGTACGCCGCGGCCACGGCGGCGGAAAGTTCAAAACTGTGATTCCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCATTCCATAAAGGATTTCGTTAAATCCTTCTTTCGTCCGCTGCCGCCGGAGCTCCACAACCGCCGTACACCTAATAGCCAAGATTTAGCATAA

Protein sequence

MGSRITPADNRVLVIFKSGSIAGNPIAVDGAEAGSKNPVGPKLAVKVKPKGESTYVVAPAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFVKSFFRPLPPELHNRRTPNSQDLA
Homology
BLAST of MC04g_new0512 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 1.33e-15
Identity = 55/133 (41.35%), Postives = 72/133 (54.14%), Query Frame = 0

Query: 1   MGSRITPADNRVLVIFKSGSIAGNPIAVDGAEAGSKNPVGPKLAVKVK---------PKG 60
           M  R++P DNR L   +    A +P +V+G      +PV  ++A   K          K 
Sbjct: 1   MRFRVSPDDNRELP--EQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKA 60

Query: 61  ESTYVVAPAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFVKS 120
           +S   + PA P T+     +    SV    G GK K+VIPK+RKLVKTMMYH IKDF+KS
Sbjct: 61  KSVLPLIPAKPDTA-----VTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKS 120

Query: 121 FFRPLPPELHNRR 124
            FRP PP+ H RR
Sbjct: 121 LFRP-PPKTHRRR 125

BLAST of MC04g_new0512 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 3.67e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 50  KGESTYVVAPAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFV 109
           K +S   + PA P T+  +   ++GY      G GK K+VIPK+RKLVKTMMYH IK+F+
Sbjct: 88  KAQSVLPLTPATPETAVTSTN-SLGYRA----GVGKVKSVIPKKRKLVKTMMYHCIKNFI 147

Query: 110 KSFFRPLPPELHNRRTPNSQD 130
           KS FR  PP+ HNR  P + D
Sbjct: 148 KSLFRR-PPKTHNRPKPITDD 162

BLAST of MC04g_new0512 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 4.66e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 77  VRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFVKSFFRPLPPELHNRRTPNSQD 130
           +R   GG K K+VIPK+RKLVKTM+YHS+KDF+ S FRP   ++HNR  P S+D
Sbjct: 29  IRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRP-SSDIHNRPKPISKD 81

BLAST of MC04g_new0512 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 7.30e-11
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 50  KGESTYVVAPAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFV 109
           K +S   +     VTS      + GY V    G GK K+VIPKRRKLVKTMMYH IK+F+
Sbjct: 67  KAKSVLPLIAETAVTSTGTLTDSHGYRV----GIGKGKSVIPKRRKLVKTMMYHCIKNFL 126

Query: 110 KSFFRPLPPELHNRRTP 126
           KS FR  PPE HNR  P
Sbjct: 127 KSLFRR-PPETHNRPKP 138

BLAST of MC04g_new0512 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_018325 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.01e-10
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 40  GPKLAVKVKPKGESTYVVAPAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKT 99
           G +L ++V+P+GES  VV       SD   +MA+GY      GG K K+VIP +RKLVK 
Sbjct: 18  GSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKT----GGPKMKSVIPMKRKLVKR 77

Query: 100 MMYHSIKDFVKSFF 113
           MMY SIK+FV S F
Sbjct: 78  MMYESIKNFVISRF 87

BLAST of MC04g_new0512 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.10e-12
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 77  VRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFVKSFFRPLPPELHNRRTPNSQDL 131
           +R   GG K K+VIPK+RKLVKTM+YHS+KDF+ S FRP   ++HNR  P S+DL
Sbjct: 29  IRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRP-SSDIHNRPKPISKDL 82

BLAST of MC04g_new0512 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.88e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 40  GPKLAVKVKPKGESTYVVAPAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKT 99
           G +L ++V+P+GES  VV       SD   +MA+GY      GG K K+VIP +RKLVK 
Sbjct: 18  GSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKT----GGPKMKSVIPMKRKLVKR 77

Query: 100 MMYHSIKDFVKSFF 113
           MMY SIK+FV S F
Sbjct: 78  MMYESIKNFVISRF 87

BLAST of MC04g_new0512 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.26e-07
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 59  PAPPVTSDPAPEMAIGYSVRRGHGGGKFKTVIPKRRKLVKTMMYHSIKDFVKSFFRPLP 117
           P  P  +  A E AI Y      G G  K+VIPK+RKLVK MMY  IK+++KS FRP P
Sbjct: 11  PVVPEKAQTALEPAIVY-----RGAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRPTP 64

BLAST of MC04g_new0512 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.46e-07
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 38  PVGPKLAVKVKPKGESTYVVAPAPPVTSDPAPEMAIGYSVRRG-HGGGKFKTVIPKRRKL 97
           P   ++ +K +P  + T + AP  PV      EMA+  +   G   GGK K+VIPKRR L
Sbjct: 7   PENDRVLLKPEPIADGTEL-APNNPVMIS---EMAVTANGAIGSRAGGKVKSVIPKRRIL 66

Query: 98  VKTMMYHSIKDFVKSFFRPLP 117
           VKTM+Y+ IKDF+ S FRP P
Sbjct: 67  VKTMIYNFIKDFIISLFRPPP 83

BLAST of MC04g_new0512 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.55e-05
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0

Query: 82  GGGKFKTVIPKRRKLVKTMMYHSIKDFVKSFFRPLP 117
           G G  K+VIPK+R+LVK MMY  IK+++KS F P P
Sbjct: 26  GAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTP 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6602134.11.33e-1541.35hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.13.67e-1249.38hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647260.14.66e-1159.26hypothetical protein Csa_018328, partial [Cucumis sativus][more]
KAG6602132.17.30e-1153.25hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN47677.11.01e-1050.00hypothetical protein Csa_018325 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KDQ74.10e-1260.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A0A0KH014.88e-1150.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
A0A5D3D5901.26e-0750.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CJW31.46e-0745.68uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0KFQ15.55e-0558.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0512.1MC04g_new0512.1mRNA