MC04g_new0440 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0440
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribonuclease H
Location	MC04: 17461010 .. 17461571 (+)
RNA-Seq Expression	MC04g_new0440
Synteny	MC04g_new0440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCTTAACTATGTCAAAACTAGCTTATCGGGCCCATCGGACGCCTCTAAGACCATTCCTGCCGAGAAACTAGTTAATAACGGGCTAAACGGCCTTACTGGGTACTGCCGGGATGATTCCTGCGGACTTCCGGACAAGGAATGACTAAACTTGGCAACCGGGATGAGTCTTGCCGTTTACCGGACCAAGACTAGTTTTTTCTCACTTACCGAGTGCCCATCGGTACTTTAGGATGTCACCCCGAGCATCAGGATGTCATGGGGCTTCGCTGCTCATTTGGGCACGCATACCGAGAACCGACCCATGTGCTTGTCTTAATGATCGGGGCCTTCCGGACATTCAGCCATCCGAACACTATCGTGGCACGACGACTCTTGCGCTCGTGCCGTGTCGTTCGAGCATACCGTACCGCATAGGGACCCCCGTGGTGCAACCTCCTACACATGGATCGAGGCGCAATGCCGGCACACCCGTGCCGCCCGACACTGTCCTCGAGTTTACTATCCTCGACGGAAGTCGCCCAAGACACTCGTCTTGTAGACGCTCGCCCTCGCCATGA

mRNA sequence

ATGCCGCTTAACTATGTCAAAACTAGCTTATCGGGCCCATCGGACGCCTCTAAGACCATTCCTGCCGAGAAACTAGTTAATAACGGGCTAAACGGCCTTACTGGGATGTCACCCCGAGCATCAGGATGTCATGGGGCTTCGCTGCTCATTTGGGCACGCATACCGAGAACCGACCCATGTGCTTGTCTTAATGATCGGGGCCTTCCGGACATTCAGCCATCCGAACACTATCGTGGCACGACGACTCTTGCGCTCGTGCCGTGTCGTTCGAGCATACCGTACCGCATAGGGACCCCCGTGGTGCAACCTCCTACACATGGATCGAGGCGCAATGCCGGCACACCCGTGCCGCCCGACACTGTCCTCGAGTTTACTATCCTCGACGGAAGTCGCCCAAGACACTCGTCTTGTAGACGCTCGCCCTCGCCATGA

Coding sequence (CDS)

ATGCCGCTTAACTATGTCAAAACTAGCTTATCGGGCCCATCGGACGCCTCTAAGACCATTCCTGCCGAGAAACTAGTTAATAACGGGCTAAACGGCCTTACTGGGATGTCACCCCGAGCATCAGGATGTCATGGGGCTTCGCTGCTCATTTGGGCACGCATACCGAGAACCGACCCATGTGCTTGTCTTAATGATCGGGGCCTTCCGGACATTCAGCCATCCGAACACTATCGTGGCACGACGACTCTTGCGCTCGTGCCGTGTCGTTCGAGCATACCGTACCGCATAGGGACCCCCGTGGTGCAACCTCCTACACATGGATCGAGGCGCAATGCCGGCACACCCGTGCCGCCCGACACTGTCCTCGAGTTTACTATCCTCGACGGAAGTCGCCCAAGACACTCGTCTTGTAGACGCTCGCCCTCGCCATGA

Protein sequence

MPLNYVKTSLSGPSDASKTIPAEKLVNNGLNGLTGMSPRASGCHGASLLIWARIPRTDPCACLNDRGLPDIQPSEHYRGTTTLALVPCRSSIPYRIGTPVVQPPTHGSRRNAGTPVPPDTVLEFTILDGSRPRHSSCRRSPSP

Homology

[Close]

BLAST of MC04g_new0440 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 1.44e-07
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 3   LNYVKTSLSGPSDASKTIPAEKLVNNGLNGLTG 35
           L+YVKTSLSGP+DASKTIP EKLVNNGLNGL G
Sbjct: 528 LSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIG 560

[Close]

BLAST of MC04g_new0440 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.98e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 3   LNYVKTSLSGPSDASKTIPAEKLVNNGLNGLTG 35
           L+YVKTSLSGP+DASKTIP EKLVNNGLNGL G
Sbjct: 528 LSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIG 560

The following BLAST results are available for this feature:

BLAST of MC04g_new0440 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136647.1	1.44e-07	87.88	uncharacterized protein LOC111008302 [Momordica charantia]	[more]

BLAST of MC04g_new0440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C617	6.98e-08	87.88	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]

BLAST of MC04g_new0440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0440.1	MC04g_new0440.1	mRNA