MC04g_new0403 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0403
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribonuclease H
Location	MC04: 15837712 .. 15838176 (+)
RNA-Seq Expression	MC04g_new0403
Synteny	MC04g_new0403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACTTGAGGCTTTCCCTAAAGGCCAATCTGAAGGTCTTCCCTGAAGATCATTCAAGGGAGGAACGACCTTCCATACTTAATCAAATTCCAGATAACAAGAGTATGAACTGGAATAGTTACTCCCGACAGGCCGACCTTGGTCCCGACATGCTCAACCGATGGTCAGATTCCTTGTCGGTTACCTCAACTTATAAATAGGACACTTCACTCTTCAGTCAGTAATCGTATTTTAGCTCGACCTCCGTACTAAGGTCGGACTCAAAACTGACTTGAGCGTCGGAGTGTTTGTTTCCTTGTGCAGGTATTTCCTTGCCAAGTGGTCTTTCAGCTTATTCTTCAAGTTGGTCATCTCTTTCCAAGGATACCCAAACTCTTCCCACGGTCATACGTGAAGCAGGTCAAGCTCTTCCCGCGGTCATACCTGGAGCAGATCGAGCTCTTCCACATGGCCGACGTTGA

mRNA sequence

ATGGCCGACTTGAGGCTTTCCCTAAAGGCCAATCTGAAGGTCTTCCCTGAAGATCATTCAAGGGAGGAACGACCTTCCATACTTAATCAAATTCCAGATAACAAGAGTATTTCCTTGCCAAGTGGTCTTTCAGCTTATTCTTCAAGTTGGTCATCTCTTTCCAAGGATACCCAAACTCTTCCCACGGTCATACGTGAAGCAGGTCAAGCTCTTCCCGCGGTCATACCTGGAGCAGATCGAGCTCTTCCACATGGCCGACGTTGA

Coding sequence (CDS)

ATGGCCGACTTGAGGCTTTCCCTAAAGGCCAATCTGAAGGTCTTCCCTGAAGATCATTCAAGGGAGGAACGACCTTCCATACTTAATCAAATTCCAGATAACAAGAGTATTTCCTTGCCAAGTGGTCTTTCAGCTTATTCTTCAAGTTGGTCATCTCTTTCCAAGGATACCCAAACTCTTCCCACGGTCATACGTGAAGCAGGTCAAGCTCTTCCCGCGGTCATACCTGGAGCAGATCGAGCTCTTCCACATGGCCGACGTTGA

Protein sequence

MADLRLSLKANLKVFPEDHSREERPSILNQIPDNKSISLPSGLSAYSSSWSSLSKDTQTLPTVIREAGQALPAVIPGADRALPHGRR

Homology

[Close]

BLAST of MC04g_new0403 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 3.98e-10
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 1  MADLRLSLKANLKVFPEDHSREERPSILNQIPDNKSISLPSGLSAYSSSWSSLSKDTQTL 60
          MADLR SLKA+LKVFPEDHS EERPSIL+Q+PD+KS++           W+S S+     
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMN-----------WNSYSRQADLG 60

Query: 61 PTVIREAGQALPAVIP 76
          P ++     +L   +P
Sbjct: 61 PDMLNRWSDSLSGGLP 65

[Close]

BLAST of MC04g_new0403 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.93e-10
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 1  MADLRLSLKANLKVFPEDHSREERPSILNQIPDNKSISLPSGLSAYSSSWSSLSKDTQTL 60
          MADLR SLKA+LKVFPEDHS EERPSIL+Q+PD+KS++           W+S S+     
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMN-----------WNSYSRQADLG 60

Query: 61 PTVIREAGQALPAVIP 76
          P ++     +L   +P
Sbjct: 61 PDMLNRWSDSLSGGLP 65

The following BLAST results are available for this feature:

BLAST of MC04g_new0403 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143495.1	3.98e-10	47.37	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]

BLAST of MC04g_new0403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY7	1.93e-10	47.37	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]

BLAST of MC04g_new0403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0403.1	MC04g_new0403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process