MC04g_new0390 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0390
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	transcription factor RF2b
Location	MC04: 15107203 .. 15108463 (-)
RNA-Seq Expression	MC04g_new0390
Synteny	MC04g_new0390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCCAGATCTCCAAATCAAGAAGATGGGGCATCGAATGGGTCCTTCAAGGACATCGAGAAGATCGGATCCAGAATCGACAATGGGCCCTTGAAGCTTGAAGCTGCCAGTACCTGTGGTGCGCCAGTGGAGAATGTCGAAGGGAGAAAATCTCTTGACCCACGTACTATCATAGCAATTTCGCATCTATTGGAGAATAAGGAGAGGAGAGATTGGGCAAGAGAGAGGGAAAGAAGAGGAAGAGAGAGAAAGAAGAGAGAAGAGTGGAAAATTAAAATATCATATAATTTTAAAATAATAAATATATAACTCATCGATGCCACGTCAGTTTAACTCTAATGAACTTTTACAACTCTTTTTCAAAGGTCAGTGTTTTTTTGAAACATAAGGACCAAATAGAAGCCTACTCTCAAACTCAAGGCCTAAAAGTGTATTTTACATATCTTCTCTTATCTTTGAAAATCAAAGAACCTCCTTGAAAAAGTGAAGATTTCAAGACATGAATTAATTTTTTAACAAGAAAAATGTCGAAGATTCAATCCTATGAAAAATGTTTCTAACCCTCGAGTCAAGTTTACTGTTGACGGCGAATTTTGGAGAGGTCCACATGTCCCTCTAATGAGTAGATTTGCCAAGGATCAAATGAGTCTCCAACCAGAAAACTCGACGCTGGTACGATGTCCTGCCTAATACATTCTGACGCTCAAGTTAGTAATCAGAGTAGGAAATAGGAAAACACACCTTTGGGGTTTAGTGACAGGTTTTTCACTTACCTCCCAAAGGTGAGGGTCCTTCCTTTTTATATGCTTAGATGACTGACTAGAAAGGACAATGGTTGGGATGGTAGGGGTGCGTCGGGCTGTACAGTGCCTGATGGGAAGAGTACGCCCCCGACATTTAGTGGGTTGCGCCTCCACCTGTAAGCATGAAAACTATCATCTGCAGCTGCCTGGTCGCAGTGCTCGATGTGCTTCCCATATAGTAGAGTGCAGGGGTGCTCCCCTGTCCCTACAGGTGTACGACGTGTAACCGTCTGTGGTCACGTGCCTTGCAATTGTCATAGCAGATCGACGTGTGTCATGCTTGGTTTTACCCTCAACAGTTAGCCCTCTTTCGTGGTCGGGCTACTTTGTTAGGAGGGCCGGGCCCAAAAGCGTTGGAAGTAAAGCAGGGCGGGTGCAATCTACGTGGCAAGGCGCATGGCGTAGAGTATCTTATTGAATCGAGACGTGGGGCTTGCGTAGAGCAGCAGTCGTGA

mRNA sequence

ATGAAGCCCAGATCTCCAAATCAAGAAGATGGGGCATCGAATGGGTCCTTCAAGGACATCGAGAAGATCGGATCCAGAATCGACAATGGGCCCTTGAAGCTTGAAGCTGCCAGTACCTGTGGTGCGCCAGTGGAGAATGTCGAAGGGAGAAAATCTCTTGACCCACGAGGGCCGGGCCCAAAAGCGTTGGAAGTAAAGCAGGGCGGGTGCAATCTACGTGGCAAGGCGCATGGCGTAGAGTATCTTATTGAATCGAGACGTGGGGCTTGCGTAGAGCAGCAGTCGTGA

Coding sequence (CDS)

ATGAAGCCCAGATCTCCAAATCAAGAAGATGGGGCATCGAATGGGTCCTTCAAGGACATCGAGAAGATCGGATCCAGAATCGACAATGGGCCCTTGAAGCTTGAAGCTGCCAGTACCTGTGGTGCGCCAGTGGAGAATGTCGAAGGGAGAAAATCTCTTGACCCACGAGGGCCGGGCCCAAAAGCGTTGGAAGTAAAGCAGGGCGGGTGCAATCTACGTGGCAAGGCGCATGGCGTAGAGTATCTTATTGAATCGAGACGTGGGGCTTGCGTAGAGCAGCAGTCGTGA

Protein sequence

MKPRSPNQEDGASNGSFKDIEKIGSRIDNGPLKLEAASTCGAPVENVEGRKSLDPRGPGPKALEVKQGGCNLRGKAHGVEYLIESRRGACVEQQS

Homology

[Close]

BLAST of MC04g_new0390 vs. NCBI nr
Match: XP_022146775.1 (transcription factor RF2b [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 5.59e-06
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16  SFKDIEKIGSRIDNGPLKLEAASTCGAPVENVEGRKSLDPR 56
           +F DIE IGSRI+NGP K EAA   G PVENVEG K   PR
Sbjct: 80  TFMDIENIGSRIENGPSKPEAAGVGGPPVENVEGEKISRPR 120

[Close]

BLAST of MC04g_new0390 vs. ExPASy TrEMBL
Match: A0A6J1CY75 (transcription factor RF2b OS=Momordica charantia OX=3673 GN=LOC111015902 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.71e-06
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16  SFKDIEKIGSRIDNGPLKLEAASTCGAPVENVEGRKSLDPR 56
           +F DIE IGSRI+NGP K EAA   G PVENVEG K   PR
Sbjct: 80  TFMDIENIGSRIENGPSKPEAAGVGGPPVENVEGEKISRPR 120

The following BLAST results are available for this feature:

BLAST of MC04g_new0390 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146775.1	5.59e-06	65.85	transcription factor RF2b [Momordica charantia]	[more]

BLAST of MC04g_new0390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CY75	2.71e-06	65.85	transcription factor RF2b OS=Momordica charantia OX=3673 GN=LOC111015902 PE=4 SV...	[more]

BLAST of MC04g_new0390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0390.1	MC04g_new0390.1	mRNA