MC04g_new0121 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0121
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein RADIALIS-like 3
LocationMC04: 3771787 .. 3772060 (+)
RNA-Seq ExpressionMC04g_new0121
SyntenyMC04g_new0121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCGGAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACGTCACTAGCAGATTCTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGCGTTCCCATCCCCAATTACAGAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGA

mRNA sequence

ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCGGAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGA

Coding sequence (CDS)

ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCGGAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGA

Protein sequence

MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQPPPSPPAMPMRS
Homology
[Close]
BLAST of MC04g_new0121 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-13
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVK+
Sbjct: 1  MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKR 52

[Close]
BLAST of MC04g_new0121 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-12
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVK+
Sbjct: 1  MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKR 54

[Close]
BLAST of MC04g_new0121 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-12
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A AVGGKSA+EV++
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRR 52

[Close]
BLAST of MC04g_new0121 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVK+
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKR 52

[Close]
BLAST of MC04g_new0121 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-10
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MAS S+       +WT KQNK FE+ALA+YD++TP+RW N+A AVGGK+ +E K+
Sbjct: 1  MASGSMSSY-GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKR 54

[Close]
BLAST of MC04g_new0121 vs. NCBI nr
Match: XP_022136071.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 110 bits (276), Expect = 8.80e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. NCBI nr
Match: XP_022952671.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 105 bits (263), Expect = 7.51e-28
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105 bits (263), Expect = 7.51e-28
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. NCBI nr
Match: KAG6572047.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 2.15e-27
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVK+
Sbjct: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 103 bits (257), Expect = 6.17e-27
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 4.26e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 3.64e-28
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 2.99e-27
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVK+
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKR 55

[Close]
BLAST of MC04g_new0121 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 8.55e-27
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV++
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQR 55

[Close]
BLAST of MC04g_new0121 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 8.55e-27
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 55
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV++
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQR 55

[Close]
BLAST of MC04g_new0121 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVK+
Sbjct: 1  MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKR 52

[Close]
BLAST of MC04g_new0121 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVK+
Sbjct: 1  MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKR 54

[Close]
BLAST of MC04g_new0121 vs. TAIR 10
Match: AT4G36570.1 (RAD-like 3 )

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVK---QPP 58
          MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A AVGGKSA+EV+   +PP
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYEPP 57

[Close]
BLAST of MC04g_new0121 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVK+
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKR 52

[Close]
BLAST of MC04g_new0121 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKQ 56
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVK+
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKR 52

The following BLAST results are available for this feature:
BLAST of MC04g_new0121 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GW752.0e-1363.64Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1[more]
F4JVB82.2e-1261.82Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q6NNN03.7e-1260.00Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q1A1734.1e-1158.18Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
Q9SIJ51.6e-1054.55Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
BLAST of MC04g_new0121 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136071.18.80e-3098.18protein RADIALIS-like 3 [Momordica charantia][more]
XP_022952671.17.51e-2894.55protein RADIALIS-like 3 [Cucurbita moschata][more]
XP_023554816.17.51e-2894.55protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo][more]
KAG6572047.12.15e-2792.73Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022975322.16.17e-2792.73protein RADIALIS-like 3 [Cucurbita maxima][more]
BLAST of MC04g_new0121 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2H24.26e-3098.18protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1[more]
A0A6J1GKW13.64e-2894.55protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1[more]
A0A6J1ICR62.99e-2792.73protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1[more]
A0A0A0K2A28.55e-2789.09SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S... [more]
A0A1S3BHB08.55e-2789.09protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1[more]
BLAST of MC04g_new0121 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19510.11.4e-1463.64RAD-like 5 [more]
AT4G39250.11.6e-1361.82RAD-like 1 [more]
AT4G36570.13.5e-1358.33RAD-like 3 [more]
AT1G75250.12.9e-1258.18RAD-like 6 [more]
AT1G75250.22.9e-1258.18RAD-like 6 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 13..56
e-value: 2.2E-18
score: 67.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..67
NoneNo IPR availablePANTHERPTHR43952:SF29PROTEIN RADIALIS-LIKE 3coord: 1..55
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..55
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 14..55
e-value: 1.75775E-4
score: 33.3178
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0121.1MC04g_new0121.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003723 RNA binding