MC04g_new0054 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0054
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	glycine-rich cell wall structural protein-like
Location	MC04: 1908584 .. 1909642 (+)
RNA-Seq Expression	MC04g_new0054
Synteny	MC04g_new0054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTCTCCAAATTACCAGTTTCTTACTGAAATTAAGAAAAAGAAAAAAAGAAAAATGAGTTCCAAGGCTTTTGCTTTCCTCGGTCTTCTCTTCGCCATTGTCGTCGTCATCTGCTCGACAGCGGTGGCAAAAAGCCTCGCACCGACCTCCATTGACGAGGACAACAATGGTAAGTTTGCTTCATTATTTAACTCGAGGTGGAGCTAGAAAATTGATAGGGAGGAATAGAAAGAAATTTAAGAAACTGATGAGAAAATTTAAAAATCTTAATTTTTTTAACATAATTTTTTTTTCCTTTTTTGTAAAATTGAAGACCAACATAGAGAGAAGGCAATCATTCATCTTCTTTGTTTAATTTTTCGCTCTTTTACATCCTAGTTAAACATGACATGATTAAATTGTCGGTGAATCCAAAAGATTAAGCTGAATGGATTACTTTTTGCTTGTTTAATCCATAGTTATTTTAAACAATAATGTTGCAGAGGTCACAGCCGAGACCAATAGGGCAGTAGAGGATGCCAAGTTTAGCTGGGGAGGATCATTTGGGGGAGGATTCGGTAGAGACTACCCCGGACCGGGTGGCTACGGTGGCTACCCCCGACGGGGGGGCTATGGTGGCTTTGGTGATTACGGTGACTACCCTGGGCGCGGTGGCTACCCTGGGCGTGGTGGCTATGACGGATTTAGACCTGGGGGAGGTCTTTGCGGCCAGAACGGTTATTGCTGCGGTTTCCGTGGCGGGTGCGACCGGTGCTGCAGGTACTACCCCGGTGGAGGGTTAGCAGAGGCAAGACCCTAAGGCAGTGTATGGGGGTGGGCAGGAACAAAGTTCAAATTTTAGGTTTGGGGAATAATATTGTAAAGTTGAGAAATAAATATGCATGGGGATGGCATGGCTGGATTTTTTCCTCCTTTTGTTTGGGTTTGAGTGTTGCTATATAGATTTGCATTTTGCAAATTAATATATAGCTAAGTTGAAATTAATTAGCTTAAATAATGTTGTACATCTTTGTCGCGTCGTTATAATTAGACAAAAAAAAAAAAAAAATCAATATGAC

mRNA sequence

ATGAGTTCCAAGGCTTTTGCTTTCCTCGGTCTTCTCTTCGCCATTGTCGTCGTCATCTGCTCGACAGCGGTGGCAAAAAGCCTCGCACCGACCTCCATTGACGAGGACAACAATGAGGTCACAGCCGAGACCAATAGGGCAGTAGAGGATGCCAAGTTTAGCTGGGGAGGATCATTTGGGGGAGGATTCGGTAGAGACTACCCCGGACCGGGTGGCTACGGTGGCTACCCCCGACGGGGGGGCTATGGTGGCTTTGGTGATTACGGTGACTACCCTGGGCGCGGTGGCTACCCTGGGCGTGGTGGCTATGACGGATTTAGACCTGGGGGAGGTCTTTGCGGCCAGAACGGTTATTGCTGCGGTTTCCGTGGCGGGTGCGACCGGTGCTGCAGGTACTACCCCGGTGGAGGGTTAGCAGAGGCAAGACCCTAA

Coding sequence (CDS)

ATGAGTTCCAAGGCTTTTGCTTTCCTCGGTCTTCTCTTCGCCATTGTCGTCGTCATCTGCTCGACAGCGGTGGCAAAAAGCCTCGCACCGACCTCCATTGACGAGGACAACAATGAGGTCACAGCCGAGACCAATAGGGCAGTAGAGGATGCCAAGTTTAGCTGGGGAGGATCATTTGGGGGAGGATTCGGTAGAGACTACCCCGGACCGGGTGGCTACGGTGGCTACCCCCGACGGGGGGGCTATGGTGGCTTTGGTGATTACGGTGACTACCCTGGGCGCGGTGGCTACCCTGGGCGTGGTGGCTATGACGGATTTAGACCTGGGGGAGGTCTTTGCGGCCAGAACGGTTATTGCTGCGGTTTCCGTGGCGGGTGCGACCGGTGCTGCAGGTACTACCCCGGTGGAGGGTTAGCAGAGGCAAGACCCTAA

Protein sequence

MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFGGGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCCGFRGGCDRCCRYYPGGGLAEARP

Homology

[Close]

BLAST of MC04g_new0054 vs. NCBI nr
Match: XP_022136252.1 (glycine-rich cell wall structural protein-like [Momordica charantia])

HSP 1 Score: 280 bits (716), Expect = 6.50e-95
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           MSSKAFAFLGLLFAIVVVICSTAVA SLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG
Sbjct: 1   MSSKAFAFLGLLFAIVVVICSTAVANSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60

Query: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCC 120
           GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCC
Sbjct: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCC 120

Query: 121 GFRGGCDRCCRYYPGGGLAEARP 143
           GFRGGCDRCCRYYPGGGLAEARP
Sbjct: 121 GFRGGCDRCCRYYPGGGLAEARP 143

[Close]

BLAST of MC04g_new0054 vs. NCBI nr
Match: KAG8369563.1 (hypothetical protein BUALT_Bualt14G0026400 [Buddleja alternifolia])

HSP 1 Score: 84.7 bits (208), Expect = 8.54e-18
Identity = 71/141 (50.35%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           M SKA  FLGL  A V++I S   A+ LA TS   D +E   ETN AV DAK+  GG++G
Sbjct: 1   MGSKAIVFLGLFLATVLLISSEVAARDLAETSNTLDTSE---ETNGAVNDAKYPGGGNYG 60

Query: 61  GGFGRDYPGPGGY--GGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGY 120
           GG    YPG GG   GGYP RGGYGG           GYPGRGGY G  PG G  G+ GY
Sbjct: 61  GG----YPGGGGNYGGGYPGRGGYGG-----------GYPGRGGYGGGYPGRGGGGRGGY 120

Query: 121 C----CG---FRGGCDRCCRY 132
           C    CG   +RG C RCC +
Sbjct: 121 CRYGCCGRSYYRGSC-RCCSF 122

[Close]

BLAST of MC04g_new0054 vs. NCBI nr
Match: XP_027330054.1 (glycine-rich cell wall structural protein-like [Abrus precatorius])

HSP 1 Score: 82.8 bits (203), Expect = 5.58e-17
Identity = 70/137 (51.09%), Postives = 79/137 (57.66%), Query Frame = 0


Query: 2   SSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFGG 61
           S  A   LGLL A+++VI S   A+ LA TS + D  E   ET   V DAK+      GG
Sbjct: 3   SKLAILILGLL-AMLLVISSEVAARDLAETSKEADTVE---ETKDLVGDAKYP-----GG 62

Query: 62  GFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYC-- 121
           G+G  YPG GG GGYP RGGYGG   Y  + G GGYPGRGGY G  PG G  G  GYC  
Sbjct: 63  GYGGGYPGHGGGGGYPGRGGYGG--GYPGHGGGGGYPGRGGYGGGYPGHGGHGGGGYCRH 122

Query: 122 --CG--FRGGCDRCCRY 132
             CG  + GGC RCC Y
Sbjct: 123 GCCGGSYGGGCRRCCSY 128

[Close]

BLAST of MC04g_new0054 vs. NCBI nr
Match: KAG7011884.1 (Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 3.87e-16
Identity = 71/129 (55.04%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           MSSKAF FLGLLFA+V++I S   A+ LA TS  ++N E TAETN  VEDAK+       
Sbjct: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN-EATAETN-GVEDAKY------- 60

Query: 61  GGFGRDYPGPGGYG--GYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLC--GQN 120
           GG+   Y G GGYG  GY  RGGYGG G YG   GRGGY GRGGY G    G  C  G+ 
Sbjct: 61  GGYDGGYGGRGGYGRGGYGGRGGYGGRGGYG---GRGGYGGRGGYGGGGGYGRGCRYGRC 117

Query: 121 GY-CCGFRG 124
           GY CC + G
Sbjct: 121 GYRCCSYAG 117

[Close]

BLAST of MC04g_new0054 vs. NCBI nr
Match: KAG6572253.1 (Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 3.97e-16
Identity = 71/129 (55.04%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           MSSKAF FLGLLFA+V++I S   A+ LA TS  ++N E TAETN  VEDAK+       
Sbjct: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN-EATAETN-GVEDAKY------- 60

Query: 61  GGFGRDYPGPGGYG--GYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLC--GQN 120
           GG+   Y G GGYG  GY  RGGYGG G YG   GRGGY GRGGY G    G  C  G+ 
Sbjct: 61  GGYDGGYGGRGGYGRGGYGGRGGYGGRGGYG---GRGGYGGRGGYGGGGGYGRGCRYGRC 117

Query: 121 GY-CCGFRG 124
           GY CC + G
Sbjct: 121 GYRCCSYAG 117

[Close]

BLAST of MC04g_new0054 vs. ExPASy TrEMBL
Match: A0A6J1C524 (glycine-rich cell wall structural protein-like OS=Momordica charantia OX=3673 GN=LOC111007995 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 3.15e-95
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           MSSKAFAFLGLLFAIVVVICSTAVA SLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG
Sbjct: 1   MSSKAFAFLGLLFAIVVVICSTAVANSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60

Query: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCC 120
           GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCC
Sbjct: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYCC 120

Query: 121 GFRGGCDRCCRYYPGGGLAEARP 143
           GFRGGCDRCCRYYPGGGLAEARP
Sbjct: 121 GFRGGCDRCCRYYPGGGLAEARP 143

[Close]

BLAST of MC04g_new0054 vs. ExPASy TrEMBL
Match: A0A6J1GM55 (cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455223 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.77e-15
Identity = 69/127 (54.33%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           MSSKAF FLGLLFA+V++I S   A+ LA TS  ++N E TAETN  VEDAK+       
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN-EATAETN-GVEDAKY------- 78

Query: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLC--GQNGY 120
           GG+   Y G GGYG    RGGYGG G YG   GRGGY GRGGY G    G  C  G+ GY
Sbjct: 79  GGYDGGYGGRGGYG----RGGYGGRGGYG---GRGGYGGRGGYGGGGGYGRGCRYGRCGY 129

Query: 121 -CCGFRG 124
            CC + G
Sbjct: 139 RCCSYAG 129

[Close]

BLAST of MC04g_new0054 vs. ExPASy TrEMBL
Match: A0A6J1HZJ5 (glycine-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468344 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.34e-14
Identity = 64/125 (51.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           MSSKAF FLGLLFA +++I S   A+ LA TS +++  E T ETN  VEDAK+       
Sbjct: 19  MSSKAFIFLGLLFAFILLISSEVAARDLAETSANKEK-EATVETN-GVEDAKY------- 78

Query: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYD-GFRPGGGLCGQNGYC 120
           GG+   Y G GGYGG    GG GG+G  G Y GRGGY GRGGY  G R G   CG    C
Sbjct: 79  GGYDGGYGGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGRGCRYG--RCGYR--C 130

Query: 121 CGFRG 124
           C + G
Sbjct: 139 CSYAG 130

[Close]

BLAST of MC04g_new0054 vs. ExPASy TrEMBL
Match: A0A1R3KES7 (Glycine rich protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01866 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.02e-14
Identity = 64/136 (47.06%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 1   MSSK-AFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSF 60
           MSSK +F F  LL A+V++I S   A+ LA T+ + +N EV  E+   VEDAK+      
Sbjct: 1   MSSKTSFLFFALLAAVVLLISSEVAARDLAETTTELNNGEVATESE-LVEDAKY------ 60

Query: 61  GGGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYC 120
            GG+G      GGYGGY  RGGYGG+G  G Y GRGGY GRGGY      GG C     C
Sbjct: 61  -GGYGNQ----GGYGGYGGRGGYGGYGGRGGYGGRGGYGGRGGY------GGGCAYG--C 116

Query: 121 CG---FRGGCDRCCRY 132
           C    +  GC RCC Y
Sbjct: 121 CRSDYYGRGCRRCCSY 116

[Close]

BLAST of MC04g_new0054 vs. ExPASy TrEMBL
Match: A0A1R3KSE4 (Glycine rich protein OS=Corchorus olitorius OX=93759 GN=COLO4_04941 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.87e-14
Identity = 67/143 (46.85%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 1   MSSK-AFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFS----- 60
           MSSK +F    LL A+V++I S   AK LA T+   +N EV  E+   VEDAK+      
Sbjct: 1   MSSKTSFLLFALLAAVVLLISSEVAAKDLAETTTKINNGEVATESE--VEDAKYGGYGNQ 60

Query: 61  --WGGSFGGGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGL 120
             +GG  G G    Y G GGYGGY  RGGYGG+G  G Y GRGGY GRGGY      GG 
Sbjct: 61  GGYGGYGGRGGNGGYGGRGGYGGYGGRGGYGGYGGRGGYGGRGGYGGRGGY------GGG 120

Query: 121 CGQNGYCCG---FRGGCDRCCRY 132
           C     CC    +  GC RCC Y
Sbjct: 121 CAYG--CCRSDYYGRGCRRCCSY 133

[Close]

BLAST of MC04g_new0054 vs. TAIR 10
Match: AT2G05540.1 (Glycine-rich protein family )

HSP 1 Score: 54.7 bits (130), Expect = 7.2e-08
Identity = 63/135 (46.67%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           M+SKA  FL L+  +V++I S  VA+ LA  S ++ NNE      R        +GG  G
Sbjct: 1   MASKALLFLSLI--VVLLIASEVVARDLAEKSAEQKNNE------RDEVKQTEQFGGFPG 60

Query: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGR-GGYPGRGGYDGFRPGGGLCGQNGYC 120
           GG+G  +PG GGYGG P  GGYG  G  G Y  R GGY  RGG  G R GGG C     C
Sbjct: 61  GGYG-GFPG-GGYGGNP-GGGYGNRG--GGYRNRDGGYGNRGGGYGNR-GGGYCRYG--C 119

Query: 121 C--GFRGGCDRCCRY 133
           C  G+ GGC RCC Y
Sbjct: 121 CYRGYYGGCFRCCAY 119

[Close]

BLAST of MC04g_new0054 vs. TAIR 10
Match: AT2G05530.1 (Glycine-rich protein family )

HSP 1 Score: 41.2 bits (95), Expect = 8.2e-04
Identity = 48/137 (35.04%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVVICSTAVAKSLAPTSIDEDNNEVTAETNRAVEDAKFSWGGSFG 60
           M+SKA    G LFA+++V+   A A           +  V +E+   V+  +++      
Sbjct: 1   MASKALVLFG-LFAVLLVVTEVAAA-----------SGTVKSESGETVQPDQYN------ 60

Query: 61  GGFGRDYPGPGGYGGYPRRGGYGGFGDYGDYPGRGGYPGRGGYDGFRPGGGLCGQNGYC- 120
                   G GG GGY   GGY G G +      GGY G GGY+    GGG  G++GYC 
Sbjct: 61  -------GGHGGNGGYNGGGGYNGGGGHNG----GGYNGGGGYN----GGGHGGRHGYCR 104

Query: 121 --CGFRG--GCDRCCRY 133
             C +RG  GC RCC Y
Sbjct: 121 YGCCYRGYHGCSRCCSY 104

The following BLAST results are available for this feature:

BLAST of MC04g_new0054 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136252.1	6.50e-95	99.30	glycine-rich cell wall structural protein-like [Momordica charantia]	[more]
KAG8369563.1	8.54e-18	50.35	hypothetical protein BUALT_Bualt14G0026400 [Buddleja alternifolia]	[more]
XP_027330054.1	5.58e-17	51.09	glycine-rich cell wall structural protein-like [Abrus precatorius]	[more]
KAG7011884.1	3.87e-16	55.04	Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572253.1	3.97e-16	55.04	Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MC04g_new0054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C524	3.15e-95	99.30	glycine-rich cell wall structural protein-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1GM55	5.77e-15	54.33	cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1HZJ5	2.34e-14	51.20	glycine-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468344 PE=4 SV=1	[more]
A0A1R3KES7	5.02e-14	47.06	Glycine rich protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01866 PE=4 SV=...	[more]
A0A1R3KSE4	5.87e-14	46.85	Glycine rich protein OS=Corchorus olitorius OX=93759 GN=COLO4_04941 PE=4 SV=1	[more]

BLAST of MC04g_new0054 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05540.1	7.2e-08	46.67	Glycine-rich protein family	[more]
AT2G05530.1	8.2e-04	35.04	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..101 e-value: 2.7E-7 score: 31.2
IPR010800	Glycine rich protein	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..132
None	No IPR available	PANTHER	PTHR37389:SF9	GLYCINE-RICH PROTEIN	coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0054.1	MC04g_new0054.1	mRNA