MC04g_new0051 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0051
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC04: 1891512 .. 1892273 (+)
RNA-Seq Expression	MC04g_new0051
Synteny	MC04g_new0051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAGAAAAACTAAAAATGAGTAGTGGTTGGAATTGGAAGGGTTTTAGGGTGGTAAGTTTCCTATTCTTCCTCATCATCATCTCCTCGGAGGTGGCTACAGCAAGGGACCTGAATCTCGCCCGCAAAAATGGTCAGTTTTGCCTTCAACTTCTTCTTTTTTCTTCTCTTTCTTTTGTAAGGTAATTAAGTGGTGGCTGACTTAGAATATGGAGGTTTTGGGCCTTGGGATATAATAATTCTGTATATGCAGCAGTGGCCATACATGAAGATGAAGGCAGCCTCAGTTCCTCACACTTTGGCTTTACCAGCCCCAGCACACGAAGCCGCTCGAGGCCCGTTTGCAATCGTCCGGGCAGTTATAAGTGCCTTGGTCCAAATCCAATTCCACGGCCTGAACCCTGCAACCGATATTCGCGGTGGAGCTGCCCCCCACCGCAAATTAAACCCCCGAACTGAACCGAATCGAATTAAATCGTCCCCTAAAACCTGTCAAGAATCCATATATATGAATTAAATTTACCTAATCTTTTGGTTGAGTGGTGGTTTATTCATCTCTAAGATGATATCAAAACGGGAGACCTGAGTTCAAACCCTTACCGAACGTGTCATTACCTTTCTTATCCCTCCTCTGTATCTTCTTTTTACTTTCTTCCTAATGAGCTTATTTCAGTTTGCGTCGTTTTTTCTCTTTTGTGTCATTTGGGAAGTTGTTCAGAACTACTGCATGTAATAAAAGGAAGATATATAAAGGGTTTTTCG

mRNA sequence

ATGAGTAGTGGTTGGAATTGGAAGGGTTTTAGGGTGGTAAGTTTCCTATTCTTCCTCATCATCATCTCCTCGGAGGTGGCTACAGCAAGGGACCTGAATCTCGCCCGCAAAAATGCAGTGGCCATACATGAAGATGAAGGCAGCCTCAGTTCCTCACACTTTGGCTTTACCAGCCCCAGCACACGAAGCCGCTCGAGGCCCGTTTGCAATCGTCCGGGCAGTTATAAGTGCCTTGGTCCAAATCCAATTCCACGGCCTGAACCCTGCAACCGATATTCGCGGTGGAGCTGCCCCCCACCGCAAATTAAACCCCCGAACTGA

Coding sequence (CDS)

ATGAGTAGTGGTTGGAATTGGAAGGGTTTTAGGGTGGTAAGTTTCCTATTCTTCCTCATCATCATCTCCTCGGAGGTGGCTACAGCAAGGGACCTGAATCTCGCCCGCAAAAATGCAGTGGCCATACATGAAGATGAAGGCAGCCTCAGTTCCTCACACTTTGGCTTTACCAGCCCCAGCACACGAAGCCGCTCGAGGCCCGTTTGCAATCGTCCGGGCAGTTATAAGTGCCTTGGTCCAAATCCAATTCCACGGCCTGAACCCTGCAACCGATATTCGCGGTGGAGCTGCCCCCCACCGCAAATTAAACCCCCGAACTGA

Protein sequence

MSSGWNWKGFRVVSFLFFLIIISSEVATARDLNLARKNAVAIHEDEGSLSSSHFGFTSPSTRSRSRPVCNRPGSYKCLGPNPIPRPEPCNRYSRWSCPPPQIKPPN

Homology

[Close]

BLAST of MC04g_new0051 vs. NCBI nr
Match: KAG6589129.1 (hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.1 bits (113), Expect = 1.38e-04
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 1  MSSGWNWKGFRVVSFLFFLIIISSEVATARDLNLARKNAVAIHEDEGSLSSSHFGFTSPS 60
          MS G   KG  +++FL F  + SSE+A AR L +A  NA  +HE   +       F +P 
Sbjct: 1  MSGG---KGSVLLAFLLFFFLFSSELAAARKLMVAGNNAAVMHEGRTT-------FVTPR 60

Query: 61 TRSRSRPVCNRPGSYKCLGPNPIPRPEPCNRYSRWSCPP 99
          T+   RP C R   Y+     P  +P  C+ Y++ +CPP
Sbjct: 61 TQYSDRPPCYRTSPYEDC---PSFQPPVCDPYTQ-NCPP 85

[Close]

BLAST of MC04g_new0051 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 47.4 bits (111), Expect = 2.75e-04
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 0


Query: 1  MSSGWNWKGFRVVSFLFFLII-ISSEVATARDLNLARKNAVAIHEDEGSLSSSHFGFTSP 60
          MSSG   +G+ +++F FF ++ ISSEV  AR L + + N   I             + +P
Sbjct: 1  MSSG-KGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIV------------YLTP 60

Query: 61 STRSRSRPVCNRPGSYKCLGPNPIPRPEPCNRYSR 94
           T  R++P+C+  G Y    P   P  E CN Y R
Sbjct: 61 RTAIRNKPICDGSGPYSRCIPRSKPPKEKCNPYVR 82

[Close]

BLAST of MC04g_new0051 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.33e-04
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 0


Query: 1  MSSGWNWKGFRVVSFLFFLII-ISSEVATARDLNLARKNAVAIHEDEGSLSSSHFGFTSP 60
          MSSG   +G+ +++F FF ++ ISSEV  AR L + + N   I             + +P
Sbjct: 1  MSSG-KGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIV------------YLTP 60

Query: 61 STRSRSRPVCNRPGSYKCLGPNPIPRPEPCNRYSR 94
           T  R++P+C+  G Y    P   P  E CN Y R
Sbjct: 61 RTAIRNKPICDGSGPYSRCIPRSKPPKEKCNPYVR 82

The following BLAST results are available for this feature:

BLAST of MC04g_new0051 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0051 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589129.1	1.38e-04	35.35	hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004144528.1	2.75e-04	33.68	uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu...	[more]

BLAST of MC04g_new0051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
O24512	1.33e-04	33.68	Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S...	[more]

BLAST of MC04g_new0051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0051.1	MC04g_new0051.1	mRNA