MC04g1953 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1953
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transmembrane protein
Location	MC04: 26333183 .. 26333551 (-)
RNA-Seq Expression	MC04g1953
Synteny	MC04g1953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCGACGAGACGATTCTAGGGCTTCTTACCAGCTCTCCTCCATGATCGTCGACGTCCTCAGAATCCCTCCCTTCCCGATCCCCATCCTCGCCTCCTCCCTCACCGCCGGATCTTTCCCGTCCAAGCACAGCCTCCTCGCCCTCACCTCCAGTGCCTCTCCGGCGGTCTTCGCCTCGCTTTTCATCGCGATTTCCATGGCTTTGATTCTCTTCGGAACCATCGCCCTCATGATTGGATTCCTGTTGGTTCCTCTCCTCATTACCGTGCTCCTTCTCTTCTACTTCTTCAACGTGGTTTCCATTCTGTCCAATTTTGCTCGCTCGCTGCTCTGCCCCTACCCTAAACATGTTTCCGCCGGTGAATTTCTC

mRNA sequence

CGTCGACGAGACGATTCTAGGGCTTCTTACCAGCTCTCCTCCATGATCGTCGACGTCCTCAGAATCCCTCCCTTCCCGATCCCCATCCTCGCCTCCTCCCTCACCGCCGGATCTTTCCCGTCCAAGCACAGCCTCCTCGCCCTCACCTCCAGTGCCTCTCCGGCGGTCTTCGCCTCGCTTTTCATCGCGATTTCCATGGCTTTGATTCTCTTCGGAACCATCGCCCTCATGATTGGATTCCTGTTGGTTCCTCTCCTCATTACCGTGCTCCTTCTCTTCTACTTCTTCAACGTGGTTTCCATTCTGTCCAATTTTGCTCGCTCGCTGCTCTGCCCCTACCCTAAACATGTTTCCGCCGGTGAATTTCTC

Coding sequence (CDS)

CGTCGACGAGACGATTCTAGGGCTTCTTACCAGCTCTCCTCCATGATCGTCGACGTCCTCAGAATCCCTCCCTTCCCGATCCCCATCCTCGCCTCCTCCCTCACCGCCGGATCTTTCCCGTCCAAGCACAGCCTCCTCGCCCTCACCTCCAGTGCCTCTCCGGCGGTCTTCGCCTCGCTTTTCATCGCGATTTCCATGGCTTTGATTCTCTTCGGAACCATCGCCCTCATGATTGGATTCCTGTTGGTTCCTCTCCTCATTACCGTGCTCCTTCTCTTCTACTTCTTCAACGTGGTTTCCATTCTGTCCAATTTTGCTCGCTCGCTGCTCTGCCCCTACCCTAAACATGTTTCCGCCGGTGAATTTCTC

Protein sequence

RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSAGEFL

Homology

[Close]

BLAST of MC04g1953 vs. NCBI nr
Match: XP_022134096.1 (uncharacterized protein LOC111006451 [Momordica charantia])

HSP 1 Score: 205 bits (522), Expect = 8.38e-66
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASL 60
           RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASL
Sbjct: 9   RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASL 68

Query: 61  FIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSA 119
           FIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSA
Sbjct: 69  FIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSA 127

[Close]

BLAST of MC04g1953 vs. NCBI nr
Match: KAE8021313.1 (hypothetical protein FH972_007215 [Carpinus fangiana])

HSP 1 Score: 82.8 bits (203), Expect = 1.60e-17
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAIS 65
           S   Y+L SMIV +LR PP P P          FP+  ++   + + SPA F SLF+ IS
Sbjct: 8   SSVLYELCSMIVHILRTPPLPFP----------FPTLTNVGPSSKTTSPAAFGSLFVGIS 67

Query: 66  MALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPY--PKHVSAGEF 122
           +AL+LFG++   IGF+L+PL+I ++LLFYF   VSILS F RS+LCP   PK+  A  +
Sbjct: 68  VALMLFGSLTFFIGFILMPLVIGLVLLFYFAGFVSILSEFGRSILCPVDSPKNAPAWNY 116

[Close]

BLAST of MC04g1953 vs. NCBI nr
Match: EXC33378.1 (hypothetical protein L484_010788 [Morus notabilis])

HSP 1 Score: 81.6 bits (200), Expect = 8.75e-17
Identity = 55/120 (45.83%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIA 65
           SR  ++LSSMI+ +L++PP PIP  I  SS +A +  S+       ++ASP  FASLF+ 
Sbjct: 8   SRVFHELSSMIIHILKLPPLPIPFTIRTSSSSASASTSRQP-----AAASPTAFASLFLG 67

Query: 66  ISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPY--PKHVSAGE 121
           IS+AL+LFG++   IGF+L+PL++ ++LLFY   ++  LS   RS+L P   P+HVSAG+
Sbjct: 68  ISLALMLFGSVTFAIGFVLMPLVMGLVLLFYALEILFNLSELGRSILFPASSPRHVSAGK 122

[Close]

BLAST of MC04g1953 vs. NCBI nr
Match: XP_024031813.1 (uncharacterized protein LOC21394073 isoform X2 [Morus notabilis])

HSP 1 Score: 80.1 bits (196), Expect = 2.17e-16
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIA 65
           SR  ++LSSMI+ +L++PP PIP  I  SS +A +  S+       ++ASP  FASLF+ 
Sbjct: 8   SRVFHELSSMIIHILKLPPLPIPFTIRTSSSSASASTSRQP-----AAASPTAFASLFLG 67

Query: 66  ISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPY--PKHVSAGE 121
           IS+AL+LFG++   IGF+L+PL++ ++LLFY   ++  LS   RS+L P   P+HVSA E
Sbjct: 68  ISLALMLFGSVTFAIGFVLMPLVMGLVLLFYALEILFNLSELGRSILFPASSPRHVSAEE 122

[Close]

BLAST of MC04g1953 vs. NCBI nr
Match: XP_024031814.1 (uncharacterized protein LOC21394073 isoform X3 [Morus notabilis])

HSP 1 Score: 78.6 bits (192), Expect = 8.47e-16
Identity = 54/120 (45.00%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIA 65
           SR  ++LSSMI+ +L++PP PIP  I  SS +A +  S+       ++ASP  FASLF+ 
Sbjct: 8   SRVFHELSSMIIHILKLPPLPIPFTIRTSSSSASASTSRQP-----AAASPTAFASLFLG 67

Query: 66  ISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPY--PKHVSAGE 121
           IS+AL+LFG++   IGF+L+PL++ ++LLFY   ++  LS   RS+L P   P+HVSA +
Sbjct: 68  ISLALMLFGSVTFAIGFVLMPLVMGLVLLFYALEILFNLSELGRSILFPASSPRHVSAEK 122

[Close]

BLAST of MC04g1953 vs. ExPASy TrEMBL
Match: A0A6J1BX03 (uncharacterized protein LOC111006451 OS=Momordica charantia OX=3673 GN=LOC111006451 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 4.06e-66
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASL 60
           RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASL
Sbjct: 9   RRRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASL 68

Query: 61  FIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSA 119
           FIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSA
Sbjct: 69  FIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHVSA 127

[Close]

BLAST of MC04g1953 vs. ExPASy TrEMBL
Match: A0A5N6QUQ1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007215 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.74e-18
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAIS 65
           S   Y+L SMIV +LR PP P P          FP+  ++   + + SPA F SLF+ IS
Sbjct: 8   SSVLYELCSMIVHILRTPPLPFP----------FPTLTNVGPSSKTTSPAAFGSLFVGIS 67

Query: 66  MALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPY--PKHVSAGEF 122
           +AL+LFG++   IGF+L+PL+I ++LLFYF   VSILS F RS+LCP   PK+  A  +
Sbjct: 68  VALMLFGSLTFFIGFILMPLVIGLVLLFYFAGFVSILSEFGRSILCPVDSPKNAPAWNY 116

[Close]

BLAST of MC04g1953 vs. ExPASy TrEMBL
Match: W9SAM7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010788 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.24e-17
Identity = 55/120 (45.83%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIA 65
           SR  ++LSSMI+ +L++PP PIP  I  SS +A +  S+       ++ASP  FASLF+ 
Sbjct: 8   SRVFHELSSMIIHILKLPPLPIPFTIRTSSSSASASTSRQP-----AAASPTAFASLFLG 67

Query: 66  ISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPY--PKHVSAGE 121
           IS+AL+LFG++   IGF+L+PL++ ++LLFY   ++  LS   RS+L P   P+HVSAG+
Sbjct: 68  ISLALMLFGSVTFAIGFVLMPLVMGLVLLFYALEILFNLSELGRSILFPASSPRHVSAGK 122

[Close]

BLAST of MC04g1953 vs. ExPASy TrEMBL
Match: A0A6I9UFL0 (uncharacterized protein LOC105177442 OS=Sesamum indicum OX=4182 GN=LOC105177442 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.22e-14
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 6   SRASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAIS 65
           +R  Y+L SMI+ +LR PP PI   + SL + S PS  S  +  +  SPA F SLFI IS
Sbjct: 66  TRVLYELCSMIIHILRSPPLPISFPSLSLLS-SPPSSSS--SPPAQISPAAFGSLFIGIS 125

Query: 66  MALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYPKHV 117
           +AL+LFG++  +IG +L+PL+IT++LLFYF  +VS LS   R +L P P  +
Sbjct: 126 IALMLFGSVTFVIGLILMPLVITLVLLFYFVGIVSNLSEIGRDILWPSPDSI 174

[Close]

BLAST of MC04g1953 vs. ExPASy TrEMBL
Match: A0A2P5CJR4 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146640 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.26e-14
Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 2   RRDDSRASYQLSSMIVDVLRIPPFPIPILASSLTA--GSFPS--KHSLLALTSSASPAVF 61
           + + SR  Y+LSSMI+ +L+ PP  IP   +      G+ PS   H+L    S  SPA F
Sbjct: 11  KHNSSRVLYELSSMIIHILKSPPLSIPFPNNHPHGHLGTTPSXQSHAL----SQVSPAGF 70

Query: 62  ASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCP----- 121
           ASLF+ IS+AL+LFG++  +IGF+L+PL++ ++LLFY   ++  LS   RS+LCP     
Sbjct: 71  ASLFLGISLALMLFGSVTFVIGFILMPLVMGLVLLFYAVQILFNLSELGRSILCPASSPS 130

Query: 122 ---YPKHVSAGEFL 123
               P+HV+   FL
Sbjct: 131 RTHVPEHVNLTIFL 140

[Close]

BLAST of MC04g1953 vs. TAIR 10
Match: AT1G27290.1 (unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 1   RRRDD--SRASYQLSSMIVDVLRIPPFPIPI----------LASSLTAGSFPSKHSLLAL 60
           R+RD+  SR  Y LSS+++++LR PP PI +          +    ++  F S    LA 
Sbjct: 4   RQRDEQQSRVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSLA- 63

Query: 61  TSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARS 112
               SP+ FASL + IS+AL+L G++   IGFLL+P ++ ++L+FY   +VS +S   RS
Sbjct: 64  --HISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRS 123

[Close]

BLAST of MC04g1953 vs. TAIR 10
Match: AT1G27290.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 1   RRRDD--SRASYQLSSMIVDVLRIPPFPIPI----------LASSLTAGSFPSKHSLLAL 60
           R+RD+  SR  Y LSS+++++LR PP PI +          +    ++  F S    LA 
Sbjct: 4   RQRDEQQSRVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSLA- 63

Query: 61  TSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARS 112
               SP+ FASL + IS+AL+L G++   IGFLL+P ++ ++L+FY   +VS +S   RS
Sbjct: 64  --HISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRS 123

The following BLAST results are available for this feature:

BLAST of MC04g1953 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134096.1	8.38e-66	100.00	uncharacterized protein LOC111006451 [Momordica charantia]	[more]
KAE8021313.1	1.60e-17	46.22	hypothetical protein FH972_007215 [Carpinus fangiana]	[more]
EXC33378.1	8.75e-17	45.83	hypothetical protein L484_010788 [Morus notabilis]	[more]
XP_024031813.1	2.17e-16	45.83	uncharacterized protein LOC21394073 isoform X2 [Morus notabilis]	[more]
XP_024031814.1	8.47e-16	45.00	uncharacterized protein LOC21394073 isoform X3 [Morus notabilis]	[more]

BLAST of MC04g1953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BX03	4.06e-66	100.00	uncharacterized protein LOC111006451 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5N6QUQ1	7.74e-18	46.22	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007215 PE=4 SV=1	[more]
W9SAM7	4.24e-17	45.83	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010788 PE=4 SV=1	[more]
A0A6I9UFL0	1.22e-14	47.32	uncharacterized protein LOC105177442 OS=Sesamum indicum OX=4182 GN=LOC105177442 ...	[more]
A0A2P5CJR4	4.26e-14	41.79	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146640 PE=4...	[more]

BLAST of MC04g1953 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27290.1	1.5e-09	38.21	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bac...	[more]
AT1G27290.2	1.5e-09	38.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34781	TRANSMEMBRANE PROTEIN	coord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1953.1	MC04g1953.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane