MC04g1942 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1942
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	general transcription factor 3C polypeptide 6-like
Location	MC04: 26289526 .. 26292258 (-)
RNA-Seq Expression	MC04g1942
Synteny	MC04g1942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTAAGGAACATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCTATCTGTATGTTTCTAACCTACTCTGATTTCAAGTAATGAATTTTTCTCTACTGTTGAGCTTATCATGGTTAAATCAAAAATTCAATGTTCATTATTTTTCACTCTAAGCTGTTAAGTATGCATCATTTGAACATTTAAAAATTAGACTTAACAGGTAAAAGATTAATTGTCTTAAGTTAGTTAAACAGAAATTTGATTGTACAATAGTCCACAAGTAATGTATTCAATTGTATATTTTATGAATAATTGTTGACATTCTTTGTAACAAATTGAATGGCATATGTTATGAGAACCGTTGGAGAGTTAAGTAAAAACTGACTTATCTTATTGATTTAAAAAAGAATGGAAACGAAAAGAGAAGCTCCACCTTACAAATAGGTTAGGCTTGAGTGGAATGATAGTCAGTTACATTAGGTTCCATCAAGTAAAAATAAAATAACCACCCTTGGTAAAAACTAATCCTAACAACTAATCAAAATAAGATTACAAATTGACCTCTCCATCAATACCAATCCCCTCCTGAGAAAAACAACTAAATCACAAGTTAGGACTACTTCTCACCTGGATGATAATCGTTAGCCAAGTCAAAGCATTATACACATTATTAGTGTTGAGATCAGATGGCAGATTAACAGCATACTGTTGGATTTGAGGGAAAGGAGAGCAAATTACATTAGTTGCCATCAAGTAAAAGTTAAATAACCCCAGGTAAAAACTAATCCTGACAGCTACTCAAATATAAGATTATTATTTAACCTCCATGCCTGTATCAAGAGCAATACTAAGTTTATATGGATTGCTACTGTTCAATAGACAGGTATTAATCACCAACCATCTCAATTGATAACAAAAACTTTCCCACTATTATACTCCTTTACTAGGCTTCAGTGCTAGACTAAGATACAACTTGTCCTGGAGTATCTGGTGAGGCGTGAGGGTGTTATCAAGTTTTTGATAATTACGTGTTGGGATCTTTAAGAATTAAATTGATGTGTTTTGTTGGCCAAGAATTTTGTTAATCTGTATGATTTATTAAAGTTTTGTTTAATTTGTTTTGCAGGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTAAGTTGTAAAAATAAGATTCAAGCTCTGCACCTAGTGTACTGCAGAACAATCTGAATGTGTAAAATCTTTGGCATTATTGAGCTCACACATGATCACCTCCGTATGCATTTTTCTACTTTGCAGTTTATTTTTCTTAAGTAGTTAAGTTATCTTCTACCTGCCTCTCTGTTTGAGAGGAACTTGGGGCTTCACTTGCTATTCTTGAGTAATTTATGATTTATTAGGTAAAGTTCTATCGGATATGTGTGACTTATGTTTTTGTTCCTTCAATAAAGAAGCTTTAATTTGTTGTTTACTGTTGTTAAGAGTACAATCATTTTTTTCATTTGAGGATAAGCTTCCAGATTAGATGTATATTACTAGAGAAAAACTCCTGAACCATACTCCCTTTTGTTTACATAATAAATGAAATATATGGACCCTGCACCATCATTTCTAATACAGTGCTCACAATTTAGATGAAATTAATAATATTATTTTTTTGTTTGGTCGGGGGTAAGGCTGTCTCTGTCCGATTTTTTGTGAATAACAGGCAAATATATATAAGATCCTTGCCATTTTATGATCATACTAAATATAGTGAATTAATTTATGTTTATCTCTCTTTTTGTAGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGGTGAGTAACCTCATTTTATTATATTTCTTAACCTGTAGCATTAGAAAACTATGTACTGGGGATGGCAGTTTGGAAGCAATTCCTTAATAGAAGCTATAAACTATATACTTGTTTAGCTGTCTTAAAGAACGACATTTTTTTGGTTGTTTATCTCAAAATGCATATATTTTATATTTTAAATTTTCAACCATTTCAATATGACCTTGAGCTAACTTCATCCAGTAAATTTAACACATGTATGAATTTGATTTCTGAACCTTTATGTAAGTTTCCAATTTGTTGGTTGAACCATGAAAAAATTTAATGAACTTTAAAAAAATGGTGGAACATGCTGTGTTGCTGCTTTGCTTATACTGTGTGCACATTGCAATAGAGATTGGAAAACCATTACTGAATTCATGTTCACTACTGTAGAGGAAGTCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCTGAGCACACTTGAGAGACTCAGATTATTTGTATATATTACTTTGGTATGTTCCTTGATAAGCCTTAAAAAGAGGAAGAAAAGACAATTTTGTTTTAGAAAAAAAACTACAATATTTTCCAAATAGTTTAAGAAACGATGTATTTTAAAATTTAAAAAAAAAAAAAGGAAAGAAAGAAACCCCAAAAAAAGATTAAAATCTGAAACGATGGGCTAAAGTCATCGTAAACGTCCCACGACCACAG

mRNA sequence

TCCGTAAGGAACATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCTATCTGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGAGGAAGTCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCTGAGCACACTTGAGAGACTCAGATTATTTGTATATATTACTTTGGTATGTTCCTTGATAAGCCTTAAAAAGAGGAAGAAAAGACAATTTTGTTTTAGAAAAAAAACTACAATATTTTCCAAATAGTTTAAGAAACGATGTATTTTAAAATTTAAAAAAAAAAAAAGGAAAGAAAGAAACCCCAAAAAAAGATTAAAATCTGAAACGATGGGCTAAAGTCATCGTAAACGTCCCACGACCACAG

Coding sequence (CDS)

TCCGTAAGGAACATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCTATCTGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGAGGAAGTCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCTGAGCACACTTGA

Protein sequence

SVRNMEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKLLPDSAVPNSTSEHT

Homology

[Close]

BLAST of MC04g1942 vs. NCBI nr
Match: XP_022133708.1 (uncharacterized protein LOC111006225 [Momordica charantia])

HSP 1 Score: 261 bits (667), Expect = 1.16e-87
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 125 LPDSAVPNSTSEHT 138
           LPDSAVPNSTSEHT
Sbjct: 121 LPDSAVPNSTSEHT 134

[Close]

BLAST of MC04g1942 vs. NCBI nr
Match: XP_022939121.1 (uncharacterized protein LOC111445121, partial [Cucurbita moschata])

HSP 1 Score: 211 bits (536), Expect = 1.03e-65
Identity = 112/140 (80.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   SVRNMEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMV 60
           SVRNMEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+
Sbjct: 139 SVRNMEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMI 198

Query: 61  GEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKIL 120
           GEYEETIGTCLTFAEEEVS+VEEE  A PSET  R+ +AV PN+APR++LKP+ASVHKIL
Sbjct: 199 GEYEETIGTCLTFAEEEVSMVEEE--AVPSETNRRSEKAVEPNQAPRRDLKPVASVHKIL 258

Query: 121 KFKLLP-----DSAVPNSTS 135
           KFKLL      DSAVP+STS
Sbjct: 259 KFKLLDSVDSVDSAVPDSTS 276

[Close]

BLAST of MC04g1942 vs. NCBI nr
Match: XP_023550663.1 (uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550664.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550665.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550666.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205 bits (522), Expect = 1.48e-65
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEK  ID ASDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEVS+VEEE  A PSET  R+ +AV PN+APRK+LKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSMVEEE--AVPSETNRRSEKAVEPNQAPRKDLKPVASVHKILKFKL 120

Query: 125 LP-----DSAVPNSTS 135
           L      DSAVP+STS
Sbjct: 121 LDSVDSVDSAVPDSTS 134

[Close]

BLAST of MC04g1942 vs. NCBI nr
Match: XP_022993830.1 (uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993832.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993833.1 uncharacterized protein LOC111489725 [Cucurbita maxima])

HSP 1 Score: 202 bits (514), Expect = 2.23e-64
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEVS+VEEE  A PS+T  R+ +AV P++APRK+LKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSMVEEE--AVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKL 120

Query: 125 LP--DSAVPNSTS 135
           L   DSAVP+STS
Sbjct: 121 LDSVDSAVPDSTS 131

[Close]

BLAST of MC04g1942 vs. NCBI nr
Match: XP_038885696.1 (uncharacterized protein LOC120075999 [Benincasa hispida])

HSP 1 Score: 201 bits (510), Expect = 8.22e-64
Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEK TID A D EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKATIDSACDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEV VVEEE E  PSE+  R+ EA  P +APRKELKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAE--PSESNRRSREAAEPKQAPRKELKPVASVHKILKFKL 120

Query: 125 LPDSAVPNSTS 135
           L DSAVPNS S
Sbjct: 121 L-DSAVPNSIS 128

[Close]

BLAST of MC04g1942 vs. ExPASy TrEMBL
Match: A0A6J1BZW5 (uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006225 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 5.63e-88
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 125 LPDSAVPNSTSEHT 138
           LPDSAVPNSTSEHT
Sbjct: 121 LPDSAVPNSTSEHT 134

[Close]

BLAST of MC04g1942 vs. ExPASy TrEMBL
Match: A0A6J1FF13 (uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC111445121 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 4.98e-66
Identity = 112/140 (80.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   SVRNMEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMV 60
           SVRNMEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+
Sbjct: 139 SVRNMEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMI 198

Query: 61  GEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKIL 120
           GEYEETIGTCLTFAEEEVS+VEEE  A PSET  R+ +AV PN+APR++LKP+ASVHKIL
Sbjct: 199 GEYEETIGTCLTFAEEEVSMVEEE--AVPSETNRRSEKAVEPNQAPRRDLKPVASVHKIL 258

Query: 121 KFKLLP-----DSAVPNSTS 135
           KFKLL      DSAVP+STS
Sbjct: 259 KFKLLDSVDSVDSAVPDSTS 276

[Close]

BLAST of MC04g1942 vs. ExPASy TrEMBL
Match: A0A6J1JTZ1 (uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 1.08e-64
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEVS+VEEE  A PS+T  R+ +AV P++APRK+LKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSMVEEE--AVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKL 120

Query: 125 LP--DSAVPNSTS 135
           L   DSAVP+STS
Sbjct: 121 LDSVDSAVPDSTS 131

[Close]

BLAST of MC04g1942 vs. ExPASy TrEMBL
Match: A0A0A0LML8 (TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 8.55e-59
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEK TID ASD EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEV VVEEE  A PSET+  + E V P +A +KELK +A VHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVPVVEEE--AQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKL 120

Query: 125 LPDSAVPNSTS 135
           L DS VP+S S
Sbjct: 121 L-DSDVPSSIS 128

[Close]

BLAST of MC04g1942 vs. ExPASy TrEMBL
Match: A0A1S4DTV8 (general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LOC103485483 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 5.75e-57
Identity = 102/131 (77.86%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 5   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 64
           MEK TID AS+ EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 65  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 124
           ETIGTCLTFAEEEV VVEEE  A PSET   + EA  P +A RKELK  A VHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVPVVEEE--AQPSETNGCSREAAEPKQATRKELKATACVHKILKFKL 120

Query: 125 LPDSAVPNSTS 135
           L DS VP+  S
Sbjct: 121 L-DSDVPSPIS 128

[Close]

BLAST of MC04g1942 vs. TAIR 10
Match: AT3G15420.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-20
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 17  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAE 76
           EE++V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK+VGEY ETIGTCL F+ 
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFS- 61

Query: 77  EEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIASVHKILKFKLLPDSAVPNST 136
                  E+EE   SE           N+ P K+ ++P+A +HKILKF+L   +A+ N  
Sbjct: 62  -------EKEEVSASE-----------NQMPHKKIIEPVAKLHKILKFRL---AALDNDD 101

[Close]

BLAST of MC04g1942 vs. TAIR 10
Match: AT1G80745.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 17  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAE 76
           E+++V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K+VGEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 77  EEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIASVHKILKFKLLP 127
           +                          N+ P+K+ ++P+A +HKILKF+L P
Sbjct: 62  K------------------------GDNQTPQKKTVEPVAKLHKILKFRLAP 89

The following BLAST results are available for this feature:

BLAST of MC04g1942 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1942 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133708.1	1.16e-87	100.00	uncharacterized protein LOC111006225 [Momordica charantia]	[more]
XP_022939121.1	1.03e-65	80.00	uncharacterized protein LOC111445121, partial [Cucurbita moschata]	[more]
XP_023550663.1	1.48e-65	80.88	uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022993830.1	2.23e-64	80.45	uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharac...	[more]
XP_038885696.1	8.22e-64	82.44	uncharacterized protein LOC120075999 [Benincasa hispida]	[more]

BLAST of MC04g1942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZW5	5.63e-88	100.00	uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1FF13	4.98e-66	80.00	uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1JTZ1	1.08e-64	80.45	uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725...	[more]
A0A0A0LML8	8.55e-59	78.63	TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680...	[more]
A0A1S4DTV8	5.75e-57	77.86	general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of MC04g1942 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15420.1	4.6e-20	48.36	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	1.1e-18	45.54	Transcription factor TFIIIC, tau55-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019481	Transcription factor TFIIIC, triple barrel domain	PFAM	PF10419	TFIIIC_sub6	coord: 17..122 e-value: 2.5E-12 score: 46.5
None	No IPR available	GENE3D	2.60.40.4370		coord: 6..123 e-value: 1.2E-10 score: 43.1
IPR042771	TFIIIC subunit GTF3C6-like	PANTHER	PTHR21860	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED	coord: 11..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1942.1	MC04g1942.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000127	transcription factor TFIIIC complex