MC04g1834 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1834
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	HIG1 domain-containing protein
Location	MC04: 25570595 .. 25571146 (+)
RNA-Seq Expression	MC04g1834
Synteny	MC04g1834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAATTCAATCCTGGGTTTCTCAACACAAACTCACCAGCATTGGTAACTTCTCCTCTCTTTTATCTCCTCCGACGCTTTTCAATTTTATGTTCGTATTTCCTTAAAAGAGATGCTTTACCACTAAAGCTGAAAGGGATGAGAGTGTTAATTTGCAAAATTTATTAGGGATGCAGCAATATATTAGAAATTAAAAAAAAAAAAAGTTTGGATAAAATTTGGGTGTTTATCTTTATAGGAGCGCTATGGGCATCTGGGATCGGAGCATCACTGGCGTACACCCGATCGAGGACTCCCCTGAAGCCAAGTCTCCGGCTTATACATGCCAGGTATATTTTTATTAATTATATACCCGACAAATATATACAAAATAAAAATTTAGAGCTAATTTCTTTTTATAAAATGGATCGAGAATTTTCTTTTACTGAAATTAATGGAAGTTTGTTTTTTGCGTCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGGCGACCGACCGGAG

mRNA sequence

ATGGAAGCAATTCAATCCTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCGCTATGGGCATCTGGGATCGGAGCATCACTGGCGTACACCCGATCGAGGACTCCCCTGAAGCCAAGTCTCCGGCTTATACATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGGCGACCGACCGGAG

Coding sequence (CDS)

ATGGAAGCAATTCAATCCTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCGCTATGGGCATCTGGGATCGGAGCATCACTGGCGTACACCCGATCGAGGACTCCCCTGAAGCCAAGTCTCCGGCTTATACATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGGCGACCGACCGGAG

Protein sequence

MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKKAAGDRPE

Homology

[Close]

BLAST of MC04g1834 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (357), Expect = 4.17e-42
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSQHKLTSIGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYYE K+AG R E
Sbjct: 61 AAVYHYYENKSAGVRSE 77

[Close]

BLAST of MC04g1834 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 6.54e-41
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKIGRDRSE 77

[Close]

BLAST of MC04g1834 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 1.32e-40
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKFGNDRSE 77

[Close]

BLAST of MC04g1834 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 136 bits (343), Expect = 5.22e-40
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYYE K AG R E
Sbjct: 61 AAVYHYYEDKLAGGRSE 77

[Close]

BLAST of MC04g1834 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (339), Expect = 2.33e-39
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAG 73
          AAVYHYYEK+  G
Sbjct: 61 AAVYHYYEKEKKG 73

[Close]

BLAST of MC04g1834 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 3.17e-41
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKIGRDRSE 77

[Close]

BLAST of MC04g1834 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 6.39e-41
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKFGNDRSE 77

[Close]

BLAST of MC04g1834 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 2.87e-38
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+QSWVS+HKLTSIG LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYEKK 70
           AAVYHYYEK+
Sbjct: 98  AAVYHYYEKR 107

[Close]

BLAST of MC04g1834 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 8.83e-38
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QSWVS+HKLTSIG LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKA 71
          AA YHYYEK+A
Sbjct: 61 AAAYHYYEKRA 71

[Close]

BLAST of MC04g1834 vs. ExPASy TrEMBL
Match: A0A2R6RWM7 (HIG1 domain family member 1B like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01526 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 1.15e-37
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QSWVSQHKLTSIG +W S IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSQHKLTSIGTIWVSAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 77
          AAVYHYYEK+  G++ E
Sbjct: 61 AAVYHYYEKRT-GEQAE 76

[Close]

BLAST of MC04g1834 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 2  EAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS HKL ++G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYEKK 71
          AV  YY+ K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of MC04g1834 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-16
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 4  IQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ +HKL ++G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYE-KKAAGDR 76
            YY+ K  A DR
Sbjct: 71 VEYYDHKSGATDR 83

The following BLAST results are available for this feature:

BLAST of MC04g1834 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1834 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578469.1	4.17e-42	92.21	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004138401.1	6.54e-41	88.31	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	1.32e-40	87.01	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
XP_038886475.1	5.22e-40	89.61	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
KAG7033273.1	2.33e-39	89.04	hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC04g1834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	3.17e-41	88.31	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	6.39e-41	87.01	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	2.87e-38	90.00	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5J5AU49	8.83e-38	87.32	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]
A0A2R6RWM7	1.15e-37	81.82	HIG1 domain family member 1B like OS=Actinidia chinensis var. chinensis OX=15908...	[more]

BLAST of MC04g1834 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	2.7e-17	57.97	Hypoxia-responsive family protein	[more]
AT5G27760.1	1.0e-16	54.79	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 11..59 e-value: 1.1E-8 score: 35.2
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.792089
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..71 e-value: 1.2E-6 score: 30.2
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..71
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1834.1	MC04g1834.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome