MC04g1825 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1825
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S26
Location	MC04: 25514001 .. 25514744 (+)
RNA-Seq Expression	MC04g1825
Synteny	MC04g1825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGTACCTAGGGTTCTTTTGTCATCTCTCGCCGTTTCATCTATGCTTATCATATGCCAAAATTGGATATATCTTTCTGTCGTTGTTGATAATTAGGGTTTGTAGGTTTATCTTTGTAGTGCCCTTTCTGATCTGTAGCAGCTAAACAGTGTATAATCATCTTTTAATTTTTGCGCGACGCTTGTTCATAATAATAGCGATTGATTTCGTTTTATCGTAGAACTAAAGATTCGGCTAATTTGAAATCGATGTGTTTTTTCCTATTATCTGAGTGATTTGGTTCAGTGTTTGAAATATAATATCTAATGTTGAGGTTTCTTATATGCGCGATTAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCGTAGGATCCCTTTCTTGAACGCTTTCTTTCTTTGTCTTCCACTATTGCAACTTCAGTGATAATTTCAATGATTGTTTTTGGTACAGAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

mRNA sequence

TATCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

Coding sequence (CDS)

TATCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

Protein sequence

YLLVQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR

Homology

[Close]

BLAST of MC04g1825 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-46
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 110
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MC04g1825 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-46
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 110
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

[Close]

BLAST of MC04g1825 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-46
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 110
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MC04g1825 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-45
Identity = 85/103 (82.52%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D 
Sbjct: 2   TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRR 109
           Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRR 104

[Close]

BLAST of MC04g1825 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-36
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y Q
Sbjct: 2   TFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRR 109
           Y LPKLY K+ YC++CAIHS VVR RSR  RR R+PP RF +R
Sbjct: 62  YALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

[Close]

BLAST of MC04g1825 vs. NCBI nr
Match: KAG7016042.1 (40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218 bits (554), Expect = 2.34e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MC04g1825 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 218 bits (554), Expect = 4.95e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MC04g1825 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (554), Expect = 5.29e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MC04g1825 vs. NCBI nr
Match: KOM40682.1 (hypothetical protein LR48_Vigan04g088000, partial [Vigna angularis])

HSP 1 Score: 217 bits (553), Expect = 7.52e-71
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 4   VQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 63
           +QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY
Sbjct: 1   LQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 60

Query: 64  DQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           +QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  EQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106

[Close]

BLAST of MC04g1825 vs. NCBI nr
Match: KYP69479.1 (40S ribosomal protein S26-1, partial [Cajanus cajan])

HSP 1 Score: 217 bits (553), Expect = 8.29e-71
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 4   VQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 63
           +QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY
Sbjct: 4   LQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 63

Query: 64  DQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           +QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 64  EQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109

[Close]

BLAST of MC04g1825 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.40e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MC04g1825 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.56e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MC04g1825 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.56e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MC04g1825 vs. ExPASy TrEMBL
Match: A0A0L9UDQ7 (40S ribosomal protein S26 (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g088000 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 3.64e-71
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 4   VQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 63
           +QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY
Sbjct: 1   LQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 60

Query: 64  DQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           +QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  EQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106

[Close]

BLAST of MC04g1825 vs. ExPASy TrEMBL
Match: A0A151TR17 (40S ribosomal protein S26 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008670 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 4.02e-71
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 4   VQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 63
           +QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY
Sbjct: 4   LQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 63

Query: 64  DQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109
           +QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 64  EQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109

[Close]

BLAST of MC04g1825 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-47
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 110
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MC04g1825 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 184.1 bits (466), Expect = 6.0e-47
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 110
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MC04g1825 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 184.1 bits (466), Expect = 6.0e-47
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 6   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 65
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 66  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 110
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

The following BLAST results are available for this feature:

BLAST of MC04g1825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	2.2e-46	86.54	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	8.4e-46	85.58	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	8.4e-46	85.58	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	3.2e-45	82.52	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	1.6e-36	70.87	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of MC04g1825 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016042.1	2.34e-71	100.00	40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022134511.1	4.95e-71	100.00	40S ribosomal protein S26-1-like [Momordica charantia]	[more]
XP_022939944.1	5.29e-71	100.00	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso...	[more]
KOM40682.1	7.52e-71	97.17	hypothetical protein LR48_Vigan04g088000, partial [Vigna angularis]	[more]
KYP69479.1	8.29e-71	97.17	40S ribosomal protein S26-1, partial [Cajanus cajan]	[more]

BLAST of MC04g1825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXZ8	2.40e-71	100.00	40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV...	[more]
A0A6J1K0V7	2.56e-71	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1	[more]
A0A6J1FIL8	2.56e-71	100.00	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=...	[more]
A0A0L9UDQ7	3.64e-71	97.17	40S ribosomal protein S26 (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Viga...	[more]
A0A151TR17	4.02e-71	97.17	40S ribosomal protein S26 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008670 PE=3...	[more]

BLAST of MC04g1825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	1.6e-47	86.54	Ribosomal protein S26e family protein	[more]
AT2G40510.1	6.0e-47	85.58	Ribosomal protein S26e family protein	[more]
AT2G40590.1	6.0e-47	85.58	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 6..108 e-value: 3.7E-53 score: 178.5
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 6..109
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 77..84
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 5..109 e-value: 1.7E-55 score: 188.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..109
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 6..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1825.1	MC04g1825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome