MC04g1776 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1776
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	S-adenosylmethionine decarboxylase uORF
Location	MC04: 25139587 .. 25139700 (-)
RNA-Seq Expression	MC04g1776
Synteny	MC04g1776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAGTAGTAGTATAAGTAAATTCATCCATTTCGAAGCTCCCCTTGGTTACATCACCGAAGACGTTCGACCTCGTGGCAATATGAAGAAGTTAAAATCTGCTGCTTACTCCAAC

mRNA sequence

TCTAGTAGTAGTATAAGTAAATTCATCCATTTCGAAGCTCCCCTTGGTTACATCACCGAAGACGTTCGACCTCGTGGCAATATGAAGAAGTTAAAATCTGCTGCTTACTCCAAC

Coding sequence (CDS)

TCTAGTAGTAGTATAAGTAAATTCATCCATTTCGAAGCTCCCCTTGGTTACATCACCGAAGACGTTCGACCTCGTGGCAATATGAAGAAGTTAAAATCTGCTGCTTACTCCAAC

Protein sequence

SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN

Homology

[Close]

BLAST of MC04g1776 vs. NCBI nr
Match: RZC24715.1 (hypothetical protein D0Y65_003757 [Glycine soja])

HSP 1 Score: 55.8 bits (133), Expect = 4.73e-09
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK I +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSIFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. NCBI nr
Match: AAR84407.1 (S-adenosylmethionine decarboxylase uORF [Daucus carota])

HSP 1 Score: 55.1 bits (131), Expect = 9.56e-09
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK + +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. NCBI nr
Match: KRH75225.1 (hypothetical protein GLYMA_01G071400v4 [Glycine max])

HSP 1 Score: 55.1 bits (131), Expect = 9.56e-09
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK + +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. NCBI nr
Match: RRT75540.1 (hypothetical protein B296_00019217 [Ensete ventricosum])

HSP 1 Score: 55.1 bits (131), Expect = 9.56e-09
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS S  +H+EAPLGY  EDVRP G +KK ++AAYSN
Sbjct: 10 SSSSSSSSLHYEAPLGYSIEDVRPHGGIKKFQTAAYSN 47

[Close]

BLAST of MC04g1776 vs. NCBI nr
Match: XP_016902719.1 (PREDICTED: uncharacterized protein LOC107990274 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 9.56e-09
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK + +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. ExPASy TrEMBL
Match: I1JEP5 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G128100 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.29e-09
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK I +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSIFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. ExPASy TrEMBL
Match: A0A445LNG0 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_003757 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.29e-09
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK I +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSIFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. ExPASy TrEMBL
Match: I1J697 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G071400 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.63e-09
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK + +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. ExPASy TrEMBL
Match: Q6RUQ6 (S-adenosylmethionine decarboxylase uORF OS=Daucus carota OX=4039 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.63e-09
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS SK + +EAPLGY  EDVRP G +KK +SAAYSN
Sbjct: 10 SSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 47

[Close]

BLAST of MC04g1776 vs. ExPASy TrEMBL
Match: A0A427AH54 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00019217 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.63e-09
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 38
          SSSS S  +H+EAPLGY  EDVRP G +KK ++AAYSN
Sbjct: 10 SSSSSSSSLHYEAPLGYSIEDVRPHGGIKKFQTAAYSN 47

[Close]

BLAST of MC04g1776 vs. TAIR 10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9 )

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-06
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 3  SSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 39
          SS S  + +EAPLGY  EDVRP G +KK KS+ YSN
Sbjct: 11 SSSSSSLFYEAPLGYSIEDVRPNGGIKKFKSSVYSN 46

[Close]

BLAST of MC04g1776 vs. TAIR 10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11 )

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-06
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 1  SSSSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 39
          S+SS    + FEAPL Y  EDVRP G +KK +SAAYSN
Sbjct: 11 SNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSN 48

[Close]

BLAST of MC04g1776 vs. TAIR 10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10 )

HSP 1 Score: 45.8 bits (107), Expect = 8.8e-06
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 3  SSISKFIHFEAPLGYITEDVRPRGNMKKLKSAAYSN 39
          SS +  + +EAPLGY  EDVRP G +KK KS+ YSN
Sbjct: 10 SSSNSSLCYEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

The following BLAST results are available for this feature:

BLAST of MC04g1776 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1776 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC24715.1	4.73e-09	71.05	hypothetical protein D0Y65_003757 [Glycine soja]	[more]
AAR84407.1	9.56e-09	68.42	S-adenosylmethionine decarboxylase uORF [Daucus carota]	[more]
KRH75225.1	9.56e-09	68.42	hypothetical protein GLYMA_01G071400v4 [Glycine max]	[more]
RRT75540.1	9.56e-09	65.79	hypothetical protein B296_00019217 [Ensete ventricosum]	[more]
XP_016902719.1	9.56e-09	68.42	PREDICTED: uncharacterized protein LOC107990274 [Cucumis melo]	[more]

BLAST of MC04g1776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
I1JEP5	2.29e-09	71.05	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G128100 PE=4 SV=1	[more]
A0A445LNG0	2.29e-09	71.05	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_003757 PE=4 SV=1	[more]
I1J697	4.63e-09	68.42	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G071400 PE=4 SV=1	[more]
Q6RUQ6	4.63e-09	68.42	S-adenosylmethionine decarboxylase uORF OS=Daucus carota OX=4039 PE=4 SV=1	[more]
A0A427AH54	4.63e-09	65.79	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00019217 PE=4 SV=1	[more]

BLAST of MC04g1776 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02468.1	1.0e-06	61.11	conserved peptide upstream open reading frame 9	[more]
AT3G25572.1	1.8e-06	60.53	conserved peptide upstream open reading frame 11	[more]
AT5G15948.1	8.8e-06	58.33	conserved peptide upstream open reading frame 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 2..38 e-value: 9.3E-14 score: 51.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1776.1	MC04g1776.1	mRNA