MC04g1649 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1649
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	E3 ubiquitin-protein ligase ATL4-like
Location	MC04: 23896285 .. 23896443 (+)
RNA-Seq Expression	MC04g1649
Synteny	MC04g1649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTGGATTGTGCGGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTTGGTCACTCCTATTTGCCCTATTTGTCGGACCAATACTCTTGAGTCGCTC

mRNA sequence

CCTGTGGATTGTGCGGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTTGGTCACTCCTATTTGCCCTATTTGTCGGACCAATACTCTTGAGTCGCTC

Coding sequence (CDS)

CCTGTGGATTGTGCGGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTTGGTCACTCCTATTTGCCCTATTTGTCGGACCAATACTCTTGAGTCGCTC

Protein sequence

PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL

Homology

[Close]

BLAST of MC04g1649 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-12
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 54
           P DCAVCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR++ L  L
Sbjct: 131 PFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDL 183

[Close]

BLAST of MC04g1649 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-12
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 3   DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES 53
           DCAVCL +FE GD  R LPLC H+FH  C+DEWL   P CP+CRT  L S
Sbjct: 155 DCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

[Close]

BLAST of MC04g1649 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-12
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTL 51
           P DC VCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR+N L
Sbjct: 123 PFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172

[Close]

BLAST of MC04g1649 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-12
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICR 47
           P DCAVCL +F   DK R+LP+C H+FH  C+D WLL    CP+CR
Sbjct: 204 PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249

[Close]

BLAST of MC04g1649 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-11
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 3   DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRT 48
           DCAVCL KFE  D+ R+LPLC H+FHA C+D WL+    CP+CR+
Sbjct: 116 DCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRS 160

[Close]

BLAST of MC04g1649 vs. NCBI nr
Match: XP_022134384.1 (E3 ubiquitin-protein ligase ATL4-like [Momordica charantia])

HSP 1 Score: 124 bits (311), Expect = 7.12e-35
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 53
           PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
Sbjct: 69  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 121

[Close]

BLAST of MC04g1649 vs. NCBI nr
Match: KAG6578641.1 (putative RING-H2 finger protein ATL50, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016181.1 putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113 bits (282), Expect = 1.78e-30
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 53
           PVDCAVCLGKF+MG+KCR+LP+CKHSFHA+CVDEWLL+TP CPICRT+TLESL
Sbjct: 77  PVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTLESL 129

[Close]

BLAST of MC04g1649 vs. NCBI nr
Match: XP_023551528.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111 bits (277), Expect = 1.02e-29
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 53
           PVDCAVCLGKF+MG+KCR+LP+CKHSFHA+CVDEWLL+TP CPICRT+TL SL
Sbjct: 77  PVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTLNSL 129

[Close]

BLAST of MC04g1649 vs. NCBI nr
Match: CAB4305566.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 100 bits (248), Expect = 4.47e-25
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE 51
           PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Sbjct: 75  PVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLQTPICPICRSRTAE 125

[Close]

BLAST of MC04g1649 vs. NCBI nr
Match: CAB4275180.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 100 bits (248), Expect = 6.43e-25
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE 51
           PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Sbjct: 89  PVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLQTPICPICRSRTAE 139

[Close]

BLAST of MC04g1649 vs. ExPASy TrEMBL
Match: A0A6J1BYM3 (E3 ubiquitin-protein ligase ATL4-like OS=Momordica charantia OX=3673 GN=LOC111006656 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 3.45e-35
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 53
           PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
Sbjct: 69  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 121

[Close]

BLAST of MC04g1649 vs. ExPASy TrEMBL
Match: A0A6J5WUV0 (RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS23601 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 2.16e-25
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE 51
           PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Sbjct: 75  PVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLQTPICPICRSRTAE 125

[Close]

BLAST of MC04g1649 vs. ExPASy TrEMBL
Match: A0A6J5UFC3 (RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23977 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 3.11e-25
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE 51
           PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Sbjct: 89  PVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLQTPICPICRSRTAE 139

[Close]

BLAST of MC04g1649 vs. ExPASy TrEMBL
Match: M5WUQ4 (RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G282900 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.30e-25
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE 51
           PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Sbjct: 75  PVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLRTPICPICRSRTAE 125

[Close]

BLAST of MC04g1649 vs. ExPASy TrEMBL
Match: A0A6P5SSW5 (RING-H2 finger protein ATL39-like OS=Prunus avium OX=42229 GN=LOC110761670 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 4.32e-25
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE 51
           PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Sbjct: 89  PVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLQTPICPICRSRTAE 139

[Close]

BLAST of MC04g1649 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 3   DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES 53
           DCAVCL +FE GD  R LPLC H+FH  C+DEWL   P CP+CRT  L S
Sbjct: 155 DCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

[Close]

BLAST of MC04g1649 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 3   DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES 53
           DCAVCL +FE GD  R LPLC H+FH  C+DEWL   P CP+CRT  L S
Sbjct: 155 DCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

[Close]

BLAST of MC04g1649 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL 54
           P DCAVCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR++ L  L
Sbjct: 131 PFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDL 183

[Close]

BLAST of MC04g1649 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-13
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTL 51
           P DC VCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR+N L
Sbjct: 123 PFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172

[Close]

BLAST of MC04g1649 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICR 47
           P DCAVCL +F   DK R+LP+C H+FH  C+D WLL    CP+CR
Sbjct: 204 PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249

The following BLAST results are available for this feature:

BLAST of MC04g1649 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940Q4	1.0e-12	54.72	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q67YI6	1.0e-12	62.00	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q9ZV53	1.7e-12	56.00	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]
Q7X843	6.6e-12	56.52	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q9LY41	1.1e-11	60.00	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]

BLAST of MC04g1649 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134384.1	7.12e-35	100.00	E3 ubiquitin-protein ligase ATL4-like [Momordica charantia]	[more]
KAG6578641.1	1.78e-30	84.91	putative RING-H2 finger protein ATL50, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023551528.1	1.02e-29	83.02	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
CAB4305566.1	4.47e-25	78.43	unnamed protein product [Prunus armeniaca]	[more]
CAB4275180.1	6.43e-25	78.43	unnamed protein product [Prunus armeniaca]	[more]

BLAST of MC04g1649 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYM3	3.45e-35	100.00	E3 ubiquitin-protein ligase ATL4-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J5WUV0	2.16e-25	78.43	RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LO...	[more]
A0A6J5UFC3	3.11e-25	78.43	RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS...	[more]
M5WUQ4	4.30e-25	78.43	RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G282900 ...	[more]
A0A6P5SSW5	4.32e-25	78.43	RING-H2 finger protein ATL39-like OS=Prunus avium OX=42229 GN=LOC110761670 PE=4 ...	[more]

BLAST of MC04g1649 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18930.1	7.2e-14	62.00	RING/U-box superfamily protein	[more]
AT3G18930.2	7.2e-14	62.00	RING/U-box superfamily protein	[more]
AT4G30400.1	7.2e-14	54.72	RING/U-box superfamily protein	[more]
AT2G18650.1	1.2e-13	56.00	RING/U-box superfamily protein	[more]
AT3G48030.1	4.7e-13	56.52	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 4..45 e-value: 2.3E-5 score: 33.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 3..46 e-value: 4.2E-12 score: 46.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 4..46 score: 11.294285
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..52 e-value: 2.6E-17 score: 63.8
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..51
None	No IPR available	PANTHER	PTHR45768:SF61	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..51
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 3..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1649.1	MC04g1649.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane