MC04g1573 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1573
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Heat shock a protein 1/8
Location	MC04: 23412901 .. 23413059 (-)
RNA-Seq Expression	MC04g1573
Synteny	MC04g1573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAGAAATTCGGGGGTGGGAGAAGCCCCGTTGGAACTCCATCACTGGGTTGGTCCTTTGTAGTCGTCATCACTTCCCTTCTCGCCGGCGCCTCCATCGTCCACAACATCTACAAACCAAATCTTGTACTCTCTCTCTCTCTCTCAATGTTGTTA

mRNA sequence

ATGGCTCAGAAATTCGGGGGTGGGAGAAGCCCCGTTGGAACTCCATCACTGGGTTGGTCCTTTGTAGTCGTCATCACTTCCCTTCTCGCCGGCGCCTCCATCGTCCACAACATCTACAAACCAAATCTTGTACTCTCTCTCTCTCTCTCAATGTTGTTA

Coding sequence (CDS)

ATGGCTCAGAAATTCGGGGGTGGGAGAAGCCCCGTTGGAACTCCATCACTGGGTTGGTCCTTTGTAGTCGTCATCACTTCCCTTCTCGCCGGCGCCTCCATCGTCCACAACATCTACAAACCAAATCTTGTACTCTCTCTCTCTCTCTCAATGTTGTTA

Protein sequence

MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVLSLSLSMLL

Homology

[Close]

BLAST of MC04g1573 vs. NCBI nr
Match: KGN51309.1 (hypothetical protein Csa_009362 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.08e-17
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M QKFGGG  P GTPS+GWSFVVVI+SLLAGASIVHNI+KPNL L
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTL 45

[Close]

BLAST of MC04g1573 vs. NCBI nr
Match: KAA0037665.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 2.13e-17
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M QKFGGG  P GTPS+GWSFVVV++SLLAGASIVH+IYKPNL L
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTL 45

[Close]

BLAST of MC04g1573 vs. NCBI nr
Match: KAE9604592.1 (hypothetical protein Lalb_Chr11g0073451 [Lupinus albus])

HSP 1 Score: 77.4 bits (189), Expect = 3.19e-17
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M +KFGGGR P GTPSLGWS VVV+ SLLAGAS+VHNIYKPNL L
Sbjct: 1  MNKKFGGGRKPTGTPSLGWSCVVVVCSLLAGASVVHNIYKPNLAL 45

[Close]

BLAST of MC04g1573 vs. NCBI nr
Match: KAG7016236.1 (hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 3.58e-17
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          MA+KFGGG  P GTPS+GWSFVVV++SLLAGASIVHNIYKPNL L
Sbjct: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLTL 45

[Close]

BLAST of MC04g1573 vs. NCBI nr
Match: KAF7822299.1 (putative transmembrane protein [Senna tora])

HSP 1 Score: 75.9 bits (185), Expect = 1.37e-16
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNL 43
          M +KFGGGR P GTPSLGWS VVV+ SLLAGAS+VHNIYKPNL
Sbjct: 3  MNKKFGGGRPPTGTPSLGWSCVVVVFSLLAGASVVHNIYKPNL 45

[Close]

BLAST of MC04g1573 vs. ExPASy TrEMBL
Match: A0A0A0KQX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.24e-18
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M QKFGGG  P GTPS+GWSFVVVI+SLLAGASIVHNI+KPNL L
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTL 45

[Close]

BLAST of MC04g1573 vs. ExPASy TrEMBL
Match: A0A5A7T878 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00480 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.03e-17
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M QKFGGG  P GTPS+GWSFVVV++SLLAGASIVH+IYKPNL L
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTL 45

[Close]

BLAST of MC04g1573 vs. ExPASy TrEMBL
Match: A0A6A4PT41 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0073451 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.54e-17
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M +KFGGGR P GTPSLGWS VVV+ SLLAGAS+VHNIYKPNL L
Sbjct: 1  MNKKFGGGRKPTGTPSLGWSCVVVVCSLLAGASVVHNIYKPNLAL 45

[Close]

BLAST of MC04g1573 vs. ExPASy TrEMBL
Match: A0A2G9GIB6 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22435 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.94e-17
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M QKFGGG+ P GTPSL WS VVV+TSLLAGASIVHN+YKP+L L
Sbjct: 1  MNQKFGGGKPPTGTPSLAWSCVVVVTSLLAGASIVHNVYKPDLTL 45

[Close]

BLAST of MC04g1573 vs. ExPASy TrEMBL
Match: A0A2I0IS49 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032905 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.94e-17
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 45
          M +KFGGGR P GTPSL WS VVV+ SLLAGASIVHNIYKPNL L
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSSVVVVVSLLAGASIVHNIYKPNLTL 45

[Close]

BLAST of MC04g1573 vs. TAIR 10
Match: AT4G26055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-11
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 1  MAQKFGGGRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 46
          M  KF GG+ P GTPSL WS VVV+ SLLAGAS+VHNIYKP+L L
Sbjct: 1  MNNKF-GGKKPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDLTL 44

[Close]

BLAST of MC04g1573 vs. TAIR 10
Match: AT5G57080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-08
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 8  GRSPVGTPSLGWSFVVVITSLLAGASIVHNIYKPNLVL 46
          G+ P GTPSL  S +VV+ SLLAGAS+VHNIYKP+L L
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDLSL 44

The following BLAST results are available for this feature:

BLAST of MC04g1573 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1573 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51309.1	1.08e-17	82.22	hypothetical protein Csa_009362 [Cucumis sativus]	[more]
KAA0037665.1	2.13e-17	80.00	putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative t...	[more]
KAE9604592.1	3.19e-17	80.00	hypothetical protein Lalb_Chr11g0073451 [Lupinus albus]	[more]
KAG7016236.1	3.58e-17	82.22	hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF7822299.1	1.37e-16	81.40	putative transmembrane protein [Senna tora]	[more]

BLAST of MC04g1573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQX5	5.24e-18	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1	[more]
A0A5A7T878	1.03e-17	80.00	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6A4PT41	1.54e-17	80.00	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0073451 PE=4 SV=1	[more]
A0A2G9GIB6	8.94e-17	77.78	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22435 P...	[more]
A0A2I0IS49	8.94e-17	80.00	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032905 PE=4 SV=1	[more]

BLAST of MC04g1573 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26055.1	2.0e-11	71.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G57080.1	3.5e-08	68.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027858	Protein BRAWNIN	PFAM	PF14990	DUF4516	coord: 11..44 e-value: 2.0E-12 score: 46.6
IPR027858	Protein BRAWNIN	PANTHER	PTHR28492	HYPOTHETICAL PROTEIN LOC691921	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1573.1	MC04g1573.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034551	mitochondrial respiratory chain complex III assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion