MC04g1533 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1533
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	MC04: 23106131 .. 23107090 (-)
RNA-Seq Expression	MC04g1533
Synteny	MC04g1533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGCATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGTAATTTGAATGACGCATTGCATTCCTATAATTTCTACTTAGAATATTTAGTTGGCTGTTTTCAGATACCATCTCGTTCTTAACTGTTATGTGGGGCTTCAATAATCTTGTGAAAATTTATTGTCTAATCCAGCTCAAATTCTAACAGTGCGGATTATTATTCATCTCATATAGTGTTAATTCATATAATGATTTCATGCTTTGTACAACAATTGCAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATTTAAGTTATTAGAATTTGTTGCTTTTTTTTTTTTGAGAGAATTGATTATCTTTCGCGATGACATTTTTGATTTATGGAATGACCTCTATTTTCTCTAGCAAATAGTAAGTTGTTTTTCGTTAAGCTGCTGGAATGCTTGTTGAAATGGTTGAAGTGCTTGAATGTTTTAGTAGTTTTCATCTTATTGGCTTAAACTATTTACTCCTTGGATATTACAATTTAGGGTTTGTTATGTTGGTGATTGAAAAATATAAATCTGTAAATAAAGTTGTCAAAGGTATGTTTTG

mRNA sequence

CTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGCATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATTTAAGTTATTAGAATTTGTTGCTTTTTTTTTTTTGAGAGAATTGATTATCTTTCGCGATGACATTTTTGATTTATGGAATGACCTCTATTTTCTCTAGCAAATAGTAAGTTGTTTTTCGTTAAGCTGCTGGAATGCTTGTTGAAATGGTTGAAGTGCTTGAATGTTTTAGTAGTTTTCATCTTATTGGCTTAAACTATTTACTCCTTGGATATTACAATTTAGGGTTTGTTATGTTGGTGATTGAAAAATATAAATCTGTAAATAAAGTTGTCAAAGGTATGTTTTG

Coding sequence (CDS)

CTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGCATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATTTAA

Protein sequence

LPSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-67
Identity = 138/152 (90.79%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 61
           P A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKK+RNPKYPRIS
Sbjct: 3   PPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 62

Query: 62  ATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV 121
           A PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV
Sbjct: 63  APPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV 122

Query: 122 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 123 NTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-67
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 135/148 (91.22%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL K+RNPKYPRISATPR
Sbjct: 7   DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-65
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 4   ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATP 63
           AD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKK+RNPKYPRISA  
Sbjct: 6   ADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPG 65

Query: 64  RNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTL 123
           RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIK AVKKMYDIQTKKVNTL
Sbjct: 66  RNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTL 125

Query: 124 IRPDGTKKAYVRLTPDYDALDVANKIGII 153
           IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. NCBI nr
Match: XP_022134285.1 (60S ribosomal protein L23A [Momordica charantia])

HSP 1 Score: 285 bits (728), Expect = 1.96e-96
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (710), Expect = 1.09e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 277 bits (708), Expect = 2.19e-93
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRISA
Sbjct: 3   PKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277 bits (708), Expect = 2.19e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016253.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (708), Expect = 2.19e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A6J1BXW6 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006585 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 9.47e-97
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 5.26e-94
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 5.26e-94
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.06e-93
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRISA
Sbjct: 3   PKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A6J1K1Q8 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489334 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.06e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MC04g1533 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-68
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-68
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 250.8 bits (639), Expect = 7.2e-67
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 250.8 bits (639), Expect = 7.2e-67
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MC04g1533 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-63
Identity = 130/148 (87.84%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of MC04g1533 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22644	5.4e-67	90.79	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	9.2e-67	91.22	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9AT35	4.6e-66	91.22	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q9M3C3	1.0e-65	90.54	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]
Q07761	5.1e-65	88.59	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]

BLAST of MC04g1533 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134285.1	1.96e-96	99.34	60S ribosomal protein L23A [Momordica charantia]	[more]
XP_008463516.1	1.09e-93	97.35	PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p...	[more]
XP_022154290.1	2.19e-93	96.69	60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p...	[more]
XP_022993268.1	2.19e-93	97.35	60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal...	[more]
XP_022939581.1	2.19e-93	97.35	60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal prot...	[more]

BLAST of MC04g1533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXW6	9.47e-97	99.34	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3C5W3	5.26e-94	97.35	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CJE6	5.26e-94	97.35	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656...	[more]
A0A6J1DJ76	1.06e-93	96.69	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1K1Q8	1.06e-93	97.35	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of MC04g1533 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	6.5e-68	91.22	ribosomal protein L23AA	[more]
AT2G39460.2	6.5e-68	91.22	ribosomal protein L23AA	[more]
AT3G55280.1	7.2e-67	90.54	ribosomal protein L23AB	[more]
AT3G55280.2	7.2e-67	90.54	ribosomal protein L23AB	[more]
AT3G55280.3	1.7e-63	87.84	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 76..152 e-value: 8.4E-29 score: 97.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..152 e-value: 3.5E-53 score: 180.8
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 72..134 e-value: 3.3E-14 score: 53.0
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 5..152
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 72..152 score: 22.185936
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 13..61 e-value: 2.1E-18 score: 66.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 5..152
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 130..145
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 69..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1533.1	MC04g1533.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome