MC04g1533 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g1533
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description50S ribosomal protein L23, chloroplastic
LocationMC04: 23106131 .. 23107090 (-)
RNA-Seq ExpressionMC04g1533
SyntenyMC04g1533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGCATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGTAATTTGAATGACGCATTGCATTCCTATAATTTCTACTTAGAATATTTAGTTGGCTGTTTTCAGATACCATCTCGTTCTTAACTGTTATGTGGGGCTTCAATAATCTTGTGAAAATTTATTGTCTAATCCAGCTCAAATTCTAACAGTGCGGATTATTATTCATCTCATATAGTGTTAATTCATATAATGATTTCATGCTTTGTACAACAATTGCAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATTTAAGTTATTAGAATTTGTTGCTTTTTTTTTTTTGAGAGAATTGATTATCTTTCGCGATGACATTTTTGATTTATGGAATGACCTCTATTTTCTCTAGCAAATAGTAAGTTGTTTTTCGTTAAGCTGCTGGAATGCTTGTTGAAATGGTTGAAGTGCTTGAATGTTTTAGTAGTTTTCATCTTATTGGCTTAAACTATTTACTCCTTGGATATTACAATTTAGGGTTTGTTATGTTGGTGATTGAAAAATATAAATCTGTAAATAAAGTTGTCAAAGGTATGTTTTG

mRNA sequence

CTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGCATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATTTAAGTTATTAGAATTTGTTGCTTTTTTTTTTTTGAGAGAATTGATTATCTTTCGCGATGACATTTTTGATTTATGGAATGACCTCTATTTTCTCTAGCAAATAGTAAGTTGTTTTTCGTTAAGCTGCTGGAATGCTTGTTGAAATGGTTGAAGTGCTTGAATGTTTTAGTAGTTTTCATCTTATTGGCTTAAACTATTTACTCCTTGGATATTACAATTTAGGGTTTGTTATGTTGGTGATTGAAAAATATAAATCTGTAAATAAAGTTGTCAAAGGTATGTTTTG

Coding sequence (CDS)

CTTCCCTCAGCTGACAGCACCAAAAAGGCCGACCCTAAGGCTCAAGCCTTGAAAACTGCGAAGGCAGTAAAATCAGGTCCAACGTTTAAGAAGAAGGCGAAGAAGATCAGGACATCAGTCACATTTCACCGCCCCAAGACATTGAAGAAGGAAAGGAATCCCAAGTATCCACGCATCAGTGCTACTCCAAGGAACAAGTTGGACCATTATCAGATTCTCAAGTATCCTTTGACCACTGAGTCTGCAATGAAGAAGATCGAGGACAACAATACTTTGGTTTTCATCGTCGACATCCGAGCCGATAAGAAGAAGATTAAGGCCGCCGTGAAAAAGATGTACGACATCCAGACAAAGAAAGTAAACACCTTGATAAGGCCTGATGGGACTAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTCGCAAACAAGATTGGAATCATTTAA

Protein sequence

LPSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-67
Identity = 138/152 (90.79%), Postives = 141/152 (92.76%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 61
           P A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKK+RNPKYPRIS
Sbjct: 3   PPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 62

Query: 62  ATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV 121
           A PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV
Sbjct: 63  APPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKV 122

Query: 122 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 123 NTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-67
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 135/148 (91.22%), Postives = 139/148 (93.92%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL K+RNPKYPRISATPR
Sbjct: 7   DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-65
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0 

Query: 4   ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATP 63
           AD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKK+RNPKYPRISA  
Sbjct: 6   ADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPG 65

Query: 64  RNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTL 123
           RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIK AVKKMYDIQTKKVNTL
Sbjct: 66  RNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTL 125

Query: 124 IRPDGTKKAYVRLTPDYDALDVANKIGII 153
           IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. NCBI nr
Match: XP_022134285.1 (60S ribosomal protein L23A [Momordica charantia])

HSP 1 Score: 285 bits (728), Expect = 1.96e-96
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (710), Expect = 1.09e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 277 bits (708), Expect = 2.19e-93
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRISA
Sbjct: 3   PKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277 bits (708), Expect = 2.19e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016253.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (708), Expect = 2.19e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A6J1BXW6 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006585 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 9.47e-97
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 5.26e-94
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 5.26e-94
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P ADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 
Sbjct: 3   PKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISV 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.06e-93
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRISA
Sbjct: 3   PKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. ExPASy TrEMBL
Match: A0A6J1K1Q8 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489334 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.06e-93
Identity = 147/151 (97.35%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 2   PSADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 61
           P AD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA
Sbjct: 3   PKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISA 62

Query: 62  TPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVN 121
           TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVN
Sbjct: 63  TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVN 122

Query: 122 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           TLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 123 TLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MC04g1533 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-68
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-68
Identity = 135/148 (91.22%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+ISATPR
Sbjct: 7   DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 250.8 bits (639), Expect = 7.2e-67
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 250.8 bits (639), Expect = 7.2e-67
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MC04g1533 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-63
Identity = 130/148 (87.84%), Postives = 132/148 (89.19%), Query Frame = 0 

Query: 5   DSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPR 64
           D TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+ISATPR
Sbjct: 7   DVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPKISATPR 66

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 124
           NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLI
Sbjct: 67  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126

Query: 125 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of MC04g1533 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O226445.4e-6790.7960S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q8LD469.2e-6791.2260S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Q9AT354.6e-6691.2260S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q9M3C31.0e-6590.5460S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
Q077615.1e-6588.5960S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
BLAST of MC04g1533 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134285.11.96e-9699.3460S ribosomal protein L23A [Momordica charantia][more]
XP_008463516.11.09e-9397.35PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p... [more]
XP_022154290.12.19e-9396.6960S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p... [more]
XP_022993268.12.19e-9397.3560S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal... [more]
XP_022939581.12.19e-9397.3560S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal prot... [more]
BLAST of MC04g1533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BXW69.47e-9799.3450S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5D3C5W35.26e-9497.3550S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CJE65.26e-9497.3550S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656... [more]
A0A6J1DJ761.06e-9396.6950S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1K1Q81.06e-9397.3550S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
BLAST of MC04g1533 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.16.5e-6891.22ribosomal protein L23AA [more]
AT2G39460.26.5e-6891.22ribosomal protein L23AA [more]
AT3G55280.17.2e-6790.54ribosomal protein L23AB [more]
AT3G55280.27.2e-6790.54ribosomal protein L23AB [more]
AT3G55280.31.7e-6387.84ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 76..152
e-value: 8.4E-29
score: 97.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..152
e-value: 3.5E-53
score: 180.8
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 72..134
e-value: 3.3E-14
score: 53.0
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 5..152
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 72..152
score: 22.185936
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 13..61
e-value: 2.1E-18
score: 66.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availablePANTHERPTHR11620:SF7860S RIBOSOMAL PROTEIN L23A-2coord: 5..152
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 130..145
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 69..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g1533.1MC04g1533.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome