MC04g1463 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1463
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	glycine-rich RNA-binding protein RZ1C-like
Location	MC04: 22521007 .. 22521150 (-)
RNA-Seq Expression	MC04g1463
Synteny	MC04g1463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGC

mRNA sequence

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGC

Coding sequence (CDS)

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGC

Protein sequence

MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIFVIFPC

Homology

[Close]

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: Q14103 (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-04
Identity = 15/34 (44.12%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 2   ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID 36
           A++EE+++++GGLSW  ++++L+D FS+FG ++D
Sbjct: 92  AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125

[Close]

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: Q60668 (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus OX=10090 GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-04
Identity = 15/34 (44.12%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 2   ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID 36
           A++EE+++++GGLSW  ++++L+D FS+FG ++D
Sbjct: 92  AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125

[Close]

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: Q9JJ54 (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus OX=10116 GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-04
Identity = 15/34 (44.12%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 2   ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID 36
           A++EE+++++GGLSW  ++++L+D FS+FG ++D
Sbjct: 90  AQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVD 123

[Close]

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.6e-04
Identity = 15/33 (45.45%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 6  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          E+  +VGGL+W   ER L+ AFS+FG ++D+++
Sbjct: 7  EYRCFVGGLAWATDERSLETAFSQFGELVDSKI 39

[Close]

BLAST of MC04g1463 vs. NCBI nr
Match: XP_022133548.1 (glycine-rich RNA-binding protein RZ1C-like [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.02e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
Sbjct: 56 MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 93

[Close]

BLAST of MC04g1463 vs. NCBI nr
Match: XP_023544240.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248.1 glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

[Close]

BLAST of MC04g1463 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

[Close]

BLAST of MC04g1463 vs. NCBI nr
Match: KAG6602289.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

[Close]

BLAST of MC04g1463 vs. NCBI nr
Match: XP_022961758.1 (glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

[Close]

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1BZF5 (glycine-rich RNA-binding protein RZ1C-like OS=Momordica charantia OX=3673 GN=LOC111006107 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.95e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
Sbjct: 56 MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 93

[Close]

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.60e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

[Close]

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.60e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

[Close]

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1CFE7 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010282 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.34e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA +EE+ ++VGGLSW I+ER+L++AFSRFG+IID+++
Sbjct: 1  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQI 38

[Close]

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.83e-08
Identity = 22/38 (57.89%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW ISER+L++AFSR+G+I++T++
Sbjct: 1  MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQI 38

[Close]

BLAST of MC04g1463 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.5e-05
Identity = 14/33 (42.42%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 8  EVYVGGLSWCISERELQDAFSRFGRIIDTRVTF 41
          ++++GGLSW + E+ L+DAFS FG + + R+ +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAY 74

[Close]

BLAST of MC04g1463 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 43.1 bits (100), Expect = 7.2e-05
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          MA KE   ++VGGLS  +++R+L+ AFSRFG I+D ++
Sbjct: 1  MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQI 38

[Close]

BLAST of MC04g1463 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 9.4e-05
Identity = 15/43 (34.88%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIF 44
          M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V    F
Sbjct: 1  MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKF 43

[Close]

BLAST of MC04g1463 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 14/33 (42.42%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 6  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          E  ++VGGLSW ++ER+L+  F R+G+I + ++
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQI 43

[Close]

BLAST of MC04g1463 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 14/33 (42.42%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 6  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          E  ++VGGLSW ++ER+L+  F R+G+I + ++
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQI 43

The following BLAST results are available for this feature:

BLAST of MC04g1463 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14103	1.6e-04	44.12	Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD PE=...	[more]
Q60668	1.6e-04	44.12	Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus OX=10090 GN=Hnrnpd PE...	[more]
Q9JJ54	2.7e-04	44.12	Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]
P49311	4.6e-04	45.45	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of MC04g1463 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133548.1	1.02e-17	100.00	glycine-rich RNA-binding protein RZ1C-like [Momordica charantia]	[more]
XP_023544240.1	3.31e-08	60.53	glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248...	[more]
XP_022990423.1	3.31e-08	60.53	glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine...	[more]
KAG6602289.1	3.31e-08	60.53	Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022961758.1	3.31e-08	60.53	glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 ...	[more]

BLAST of MC04g1463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF5	4.95e-18	100.00	glycine-rich RNA-binding protein RZ1C-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1JS04	1.60e-08	60.53	glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728...	[more]
A0A6J1HB93	1.60e-08	60.53	glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CFE7	4.34e-08	60.53	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1BW89	7.83e-08	57.89	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]

BLAST of MC04g1463 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	5.5e-05	42.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G04280.1	7.2e-05	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	9.4e-05	34.88	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	2.1e-04	42.42	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	2.1e-04	42.42	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..38 e-value: 5.7E-5 score: 22.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..48 score: 9.132199
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..44 e-value: 1.0E-7 score: 33.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1463.1	MC04g1463.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding