MC04g1463 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g1463
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionglycine-rich RNA-binding protein RZ1C-like
LocationMC04: 22521007 .. 22521150 (-)
RNA-Seq ExpressionMC04g1463
SyntenyMC04g1463
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGC

mRNA sequence

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGC

Coding sequence (CDS)

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGC

Protein sequence

MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIFVIFPC
Homology
BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: Q14103 (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-04
Identity = 15/34 (44.12%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 2   ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID 36
           A++EE+++++GGLSW  ++++L+D FS+FG ++D
Sbjct: 92  AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: Q60668 (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus OX=10090 GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-04
Identity = 15/34 (44.12%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 2   ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID 36
           A++EE+++++GGLSW  ++++L+D FS+FG ++D
Sbjct: 92  AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: Q9JJ54 (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus OX=10116 GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-04
Identity = 15/34 (44.12%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 2   ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID 36
           A++EE+++++GGLSW  ++++L+D FS+FG ++D
Sbjct: 90  AQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVD 123

BLAST of MC04g1463 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.6e-04
Identity = 15/33 (45.45%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 6  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          E+  +VGGL+W   ER L+ AFS+FG ++D+++
Sbjct: 7  EYRCFVGGLAWATDERSLETAFSQFGELVDSKI 39

BLAST of MC04g1463 vs. NCBI nr
Match: XP_022133548.1 (glycine-rich RNA-binding protein RZ1C-like [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.02e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
Sbjct: 56 MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 93

BLAST of MC04g1463 vs. NCBI nr
Match: XP_023544240.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248.1 glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

BLAST of MC04g1463 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

BLAST of MC04g1463 vs. NCBI nr
Match: KAG6602289.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

BLAST of MC04g1463 vs. NCBI nr
Match: XP_022961758.1 (glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 3.31e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1BZF5 (glycine-rich RNA-binding protein RZ1C-like OS=Momordica charantia OX=3673 GN=LOC111006107 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.95e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
Sbjct: 56 MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 93

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.60e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.60e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Sbjct: 1  MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQI 38

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1CFE7 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010282 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.34e-08
Identity = 23/38 (60.53%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA +EE+ ++VGGLSW I+ER+L++AFSRFG+IID+++
Sbjct: 1  MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQI 38

BLAST of MC04g1463 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.83e-08
Identity = 22/38 (57.89%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 38
          MA K+E+ ++VGGLSW ISER+L++AFSR+G+I++T++
Sbjct: 1  MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQI 38

BLAST of MC04g1463 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.5e-05
Identity = 14/33 (42.42%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 8  EVYVGGLSWCISERELQDAFSRFGRIIDTRVTF 41
          ++++GGLSW + E+ L+DAFS FG + + R+ +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAY 74

BLAST of MC04g1463 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 43.1 bits (100), Expect = 7.2e-05
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          MA KE   ++VGGLS  +++R+L+ AFSRFG I+D ++
Sbjct: 1  MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQI 38

BLAST of MC04g1463 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 9.4e-05
Identity = 15/43 (34.88%), Postives = 28/43 (65.12%), Query Frame = 0

Query: 1  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIF 44
          M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V    F
Sbjct: 1  MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKF 43

BLAST of MC04g1463 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 14/33 (42.42%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 6  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          E  ++VGGLSW ++ER+L+  F R+G+I + ++
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQI 43

BLAST of MC04g1463 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 14/33 (42.42%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 6  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV 39
          E  ++VGGLSW ++ER+L+  F R+G+I + ++
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQI 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q141031.6e-0444.12Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD PE=... [more]
Q606681.6e-0444.12Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus OX=10090 GN=Hnrnpd PE... [more]
Q9JJ542.7e-0444.12Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus OX=10116 GN=Hnrn... [more]
P493114.6e-0445.45Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_022133548.11.02e-17100.00glycine-rich RNA-binding protein RZ1C-like [Momordica charantia][more]
XP_023544240.13.31e-0860.53glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248... [more]
XP_022990423.13.31e-0860.53glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine... [more]
KAG6602289.13.31e-0860.53Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so... [more]
XP_022961758.13.31e-0860.53glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 ... [more]
Match NameE-valueIdentityDescription
A0A6J1BZF54.95e-18100.00glycine-rich RNA-binding protein RZ1C-like OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1JS041.60e-0860.53glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728... [more]
A0A6J1HB931.60e-0860.53glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1CFE74.34e-0860.53glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=... [more]
A0A6J1BW897.83e-0857.89glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=... [more]
Match NameE-valueIdentityDescription
AT3G08000.15.5e-0542.42RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G04280.17.2e-0550.00RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT3G26420.19.4e-0534.88RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.12.1e-0442.42RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.22.1e-0442.42RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..38
e-value: 5.7E-5
score: 22.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..48
score: 9.132199
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..44
e-value: 1.0E-7
score: 33.9
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g1463.1MC04g1463.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding