MC04g1462 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1462
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	glycine-rich RNA-binding protein RZ1C-like
Location	MC04: 22519837 .. 22520392 (-)
RNA-Seq Expression	MC04g1462
Synteny	MC04g1462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTGTCGTGGATATGGATTTATTACCTTTGCAACTCGTCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACCAGGGGATTATCAGTGTCTAAGGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGGTCGGGATAGCTTGAGGAGAGCTAGTTCTGGGCTAAAAATGGAGGGAGAAGATATAGGGCCAGAGATTGAGAGAGGTTACTTATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCATGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACAGTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGATGCTACAACTACCATCATAGCGACAGGTAT

mRNA sequence

CGTTGTCGTGGATATGGATTTATTACCTTTGCAACTCGTCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACCAGGGGATTATCAGTGTCGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGAGATTGAGAGAGGTTACTTATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCATGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACAGTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGATGCTACAACTACCATCATAGCGACAGGTAT

Coding sequence (CDS)

CGTTGTCGTGGATATGGATTTATTACCTTTGCAACTCGTCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACCAGGGGATTATCAGTGTCGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGAGATTGAGAGAGGTTACTTATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCATGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACAGTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGATGCTACAACTACCATCATAGCGACAGGTAT

Protein sequence

RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAKQPEIRGEYVEPCFSRGYLSGEIERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY

Homology

[Close]

BLAST of MC04g1462 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.7e-19
Identity = 69/178 (38.76%), Postives = 98/178 (55.06%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RR MD +IREM+G++F   +ISV + +P++  +  E   SR    G  
Sbjct: 46  RSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR----GGR 105

Query: 61  ERGYLSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PSFSSR--S 120
           + GY   G+ SF  GG        D C+ CG +GHWARDCP AG  R      FSSR  +
Sbjct: 106 DSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASA 165

Query: 121 WFERDDSENSFGE-----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 164
           +   D   + + +     DR+RY+D++YDG        R D++ + Y   + + SDRY
Sbjct: 166 YGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFDSR-EAYIPRDRYASDRY 218

[Close]

BLAST of MC04g1462 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-14
Identity = 60/166 (36.14%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITF  RRG D+AI+ M+G+E    +ISV K +P++ GE V+     G      
Sbjct: 51  RPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGG------ 110

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSEN 120
             GY S G+            D C+ C   GHWARDCP  G  R  F  R          
Sbjct: 111 --GYSSRGK---------GTEDECFKCRRPGHWARDCPSTGDDRERF--RVPLAMRSRIG 170

Query: 121 SFGEDRDRYVDEQYDGGRDRVR--DHRLDNKQDKYGCYNYHHSDRY 164
                RDRY D   +  R+R R  D  +D ++D+ G   Y + DR+
Sbjct: 171 DIDGHRDRYGDRDLEREREREREFDRYMDGRRDRDG-GRYSYRDRF 196

[Close]

BLAST of MC04g1462 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 57/165 (34.55%), Postives = 75/165 (45.45%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITF  ++ MD AI  MNG + D   I+V K QP   G   +    RG      
Sbjct: 46  RSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGR----- 105

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSEN 120
           +RGY    RD  R  G     D C+ CG  GH+AR+CP    R         F   D   
Sbjct: 106 DRGY---DRDRSRPSGGRGGGD-CFKCGKPGHFARECPSESSR----DGGGRFSSKDDRY 165

Query: 121 SFGEDRDRYVDEQYDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR 163
           S  +DR    D++Y    DR   +D R  +K D+Y   +  +  R
Sbjct: 166 SSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSR 197

[Close]

BLAST of MC04g1462 vs. ExPASy Swiss-Prot
Match: Q8VYA5 (Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana OX=3702 GN=RS2Z33 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-05
Identity = 31/94 (32.98%), Postives = 39/94 (41.49%), Query Frame = 0


Query: 3   RGYGFITFATRRGMDNAIREMNGQEFDQGIISVAKQPEIRGEYVEPCFSRGYLSGEIERG 62
           R Y F+ F   R  D+A   ++G++FD   I+V                      E  RG
Sbjct: 44  RDYAFVEFGDPRDADDARHYLDGRDFDGSRITV----------------------EFSRG 103

Query: 63  YLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDC 97
              G RD   RG        C+NCG  GHWARDC
Sbjct: 104 APRGSRDFDSRGPPPGA-GRCFNCGVDGHWARDC 114

[Close]

BLAST of MC04g1462 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.3e-05
Identity = 37/110 (33.64%), Postives = 46/110 (41.82%), Query Frame = 0


Query: 4   GYGFITFATRRGMDNAIREMNGQEFDQGIISVAKQPEIRGEYVEPCFSRGYLSGEIERGY 63
           GY F+ F   R   +AIR ++G+                G  VE   +RG   G    G 
Sbjct: 39  GYAFLDFEDPRDARDAIRALDGK---------------NGWRVEQSHNRGERGGGGRGGD 98

Query: 64  LSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPL---AGRRRPSFSSRS 111
             GG     RGGR      CY CG  GH+AR+C      GRRR    SR+
Sbjct: 99  RGGGGGG--RGGRGGSDLKCYECGETGHFARECRNRGGTGRRRSKSRSRT 131

[Close]

BLAST of MC04g1462 vs. NCBI nr
Match: XP_022133674.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia])

HSP 1 Score: 222 bits (566), Expect = 8.60e-68
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 58  EIERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 117
           EIERGYLSGGRDSF RGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS
Sbjct: 9   EIERGYLSGGRDSFGRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 68

Query: 118 ENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 162
           ENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR
Sbjct: 69  ENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 113

[Close]

BLAST of MC04g1462 vs. NCBI nr
Match: XP_038885256.1 (glycine-rich RNA-binding protein RZ1C isoform X2 [Benincasa hispida])

HSP 1 Score: 157 bits (398), Expect = 7.80e-45
Identity = 93/168 (55.36%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+GQEF + IISV K +P++ G+  EP F  G      
Sbjct: 8   RPRGFGFITFADRRGMDDAIREMHGQEFGERIISVNKAEPKMEGDDAEPGFRGG------ 67

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERD 120
             GY SGGR SF RG RS   D C+ CG  GHWARDCP      GR R SFSSRS F+ D
Sbjct: 68  --GYSSGGRASFGRGDRSVGQDECFKCGRPGHWARDCPSVSGGRGRGRSSFSSRSRFDSD 127

Query: 121 DSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 163
              + FG DRDRYVD++Y+GGR   RD R D + DKYG  + +  DRY
Sbjct: 128 GRGDRFGGDRDRYVDDRYNGGRYGDRD-RFDRRDDKYGSRDRYFDDRY 166

[Close]

BLAST of MC04g1462 vs. NCBI nr
Match: XP_038885252.1 (glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885253.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885254.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885255.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida])

HSP 1 Score: 157 bits (398), Expect = 2.20e-44
Identity = 93/168 (55.36%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+GQEF + IISV K +P++ G+  EP F  G      
Sbjct: 46  RPRGFGFITFADRRGMDDAIREMHGQEFGERIISVNKAEPKMEGDDAEPGFRGG------ 105

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERD 120
             GY SGGR SF RG RS   D C+ CG  GHWARDCP      GR R SFSSRS F+ D
Sbjct: 106 --GYSSGGRASFGRGDRSVGQDECFKCGRPGHWARDCPSVSGGRGRGRSSFSSRSRFDSD 165

Query: 121 DSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 163
              + FG DRDRYVD++Y+GGR   RD R D + DKYG  + +  DRY
Sbjct: 166 GRGDRFGGDRDRYVDDRYNGGRYGDRD-RFDRRDDKYGSRDRYFDDRY 204

[Close]

BLAST of MC04g1462 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 154 bits (390), Expect = 4.19e-43
Identity = 96/172 (55.81%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+G EF + IISV K +P++ G+  EP F  G      
Sbjct: 46  RPRGFGFITFADRRGMDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGG------ 105

Query: 61  ERGYLSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLAG----RRRPSFSSRSWFER 120
             GY SGGR SF RGG RS   D C+ CG  GHWARDCP AG    R R SFSSRS F+ 
Sbjct: 106 --GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG 165

Query: 121 DDSENSFGEDRDRYVDEQYDGGRD--RVRDH-RLDNKQDKYGCYNYHHSDRY 163
           D   + FG DRDRYVD++YDGGRD  R  D  R D + DKYG  + +  DRY
Sbjct: 166 DSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MC04g1462 vs. NCBI nr
Match: KAG6602289.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (390), Expect = 4.19e-43
Identity = 96/172 (55.81%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+G EF + IISV K +P++ G+  EP F  G      
Sbjct: 46  RPRGFGFITFADRRGMDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGG------ 105

Query: 61  ERGYLSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLAG----RRRPSFSSRSWFER 120
             GY SGGR SF RGG RS   D C+ CG  GHWARDCP AG    R R SFSSRS F+ 
Sbjct: 106 --GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG 165

Query: 121 DDSENSFGEDRDRYVDEQYDGGRD--RVRDH-RLDNKQDKYGCYNYHHSDRY 163
           D   + FG DRDRYVD++YDGGRD  R  D  R D + DKYG  + +  DRY
Sbjct: 166 DSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MC04g1462 vs. ExPASy TrEMBL
Match: A0A6J1BWP1 (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Momordica charantia OX=3673 GN=LOC111006199 PE=4 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.16e-68
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 58  EIERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 117
           EIERGYLSGGRDSF RGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS
Sbjct: 9   EIERGYLSGGRDSFGRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 68

Query: 118 ENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 162
           ENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR
Sbjct: 69  ENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 113

[Close]

BLAST of MC04g1462 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 2.03e-43
Identity = 96/172 (55.81%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+G EF + IISV K +P++ G+  EP F  G      
Sbjct: 46  RPRGFGFITFADRRGMDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGG------ 105

Query: 61  ERGYLSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLAG----RRRPSFSSRSWFER 120
             GY SGGR SF RGG RS   D C+ CG  GHWARDCP AG    R R SFSSRS F+ 
Sbjct: 106 --GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG 165

Query: 121 DDSENSFGEDRDRYVDEQYDGGRD--RVRDH-RLDNKQDKYGCYNYHHSDRY 163
           D   + FG DRDRYVD++YDGGRD  R  D  R D + DKYG  + +  DRY
Sbjct: 166 DSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MC04g1462 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 2.03e-43
Identity = 96/172 (55.81%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+G EF + IISV K +P++ G+  EP F  G      
Sbjct: 46  RPRGFGFITFADRRGMDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGG------ 105

Query: 61  ERGYLSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLAG----RRRPSFSSRSWFER 120
             GY SGGR SF RGG RS   D C+ CG  GHWARDCP AG    R R SFSSRS F+ 
Sbjct: 106 --GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG 165

Query: 121 DDSENSFGEDRDRYVDEQYDGGRD--RVRDH-RLDNKQDKYGCYNYHHSDRY 163
           D   + FG DRDRYVD++YDGGRD  R  D  R D + DKYG  + +  DRY
Sbjct: 166 DSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MC04g1462 vs. ExPASy TrEMBL
Match: A0A6J1BW59 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 5.14e-43
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+G+E  +  ISV K +P++ G+  EP F  G      
Sbjct: 8   RPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGG------ 67

Query: 61  ERGYLSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLAG----RRRPSFSSRSWFER 120
             GY SGGR SF RGG RS   D C+ CG  GHWARDCP  G    R R SFSSRS F+ 
Sbjct: 68  --GYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDS 127

Query: 121 DDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 163
           D   + FG DRDRYVD++YDGGR   RDH  D + DKYG  + +  DRY
Sbjct: 128 DSRGDRFGGDRDRYVDDRYDGGRYGDRDH-FDRRDDKYGSRDRYFDDRY 167

[Close]

BLAST of MC04g1462 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 1.42e-42
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RRGMD+AIREM+G+E  +  ISV K +P++ G+  EP F  G      
Sbjct: 46  RPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGG------ 105

Query: 61  ERGYLSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLAG----RRRPSFSSRSWFER 120
             GY SGGR SF RGG RS   D C+ CG  GHWARDCP  G    R R SFSSRS F+ 
Sbjct: 106 --GYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDS 165

Query: 121 DDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 163
           D   + FG DRDRYVD++YDGGR   RDH  D + DKYG  + +  DRY
Sbjct: 166 DSRGDRFGGDRDRYVDDRYDGGRYGDRDH-FDRRDDKYGSRDRYFDDRY 205

[Close]

BLAST of MC04g1462 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-20
Identity = 69/178 (38.76%), Postives = 98/178 (55.06%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITFA RR MD +IREM+G++F   +ISV + +P++  +  E   SR    G  
Sbjct: 46  RSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR----GGR 105

Query: 61  ERGYLSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PSFSSR--S 120
           + GY   G+ SF  GG        D C+ CG +GHWARDCP AG  R      FSSR  +
Sbjct: 106 DSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASA 165

Query: 121 WFERDDSENSFGE-----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 164
           +   D   + + +     DR+RY+D++YDG        R D++ + Y   + + SDRY
Sbjct: 166 YGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFDSR-EAYIPRDRYASDRY 218

[Close]

BLAST of MC04g1462 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 60/166 (36.14%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITF  RRG D+AI+ M+G+E    +ISV K +P++ GE V+     G      
Sbjct: 51  RPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGG------ 110

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSEN 120
             GY S G+            D C+ C   GHWARDCP  G  R  F  R          
Sbjct: 111 --GYSSRGK---------GTEDECFKCRRPGHWARDCPSTGDDRERF--RVPLAMRSRIG 170

Query: 121 SFGEDRDRYVDEQYDGGRDRVR--DHRLDNKQDKYGCYNYHHSDRY 164
                RDRY D   +  R+R R  D  +D ++D+ G   Y + DR+
Sbjct: 171 DIDGHRDRYGDRDLEREREREREFDRYMDGRRDRDG-GRYSYRDRF 196

[Close]

BLAST of MC04g1462 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 60/166 (36.14%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITF  RRG D+AI+ M+G+E    +ISV K +P++ GE V+     G      
Sbjct: 51  RPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGG------ 110

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSEN 120
             GY S G+            D C+ C   GHWARDCP  G  R  F  R          
Sbjct: 111 --GYSSRGK---------GTEDECFKCRRPGHWARDCPSTGDDRERF--RVPLAMRSRIG 170

Query: 121 SFGEDRDRYVDEQYDGGRDRVR--DHRLDNKQDKYGCYNYHHSDRY 164
                RDRY D   +  R+R R  D  +D ++D+ G   Y + DR+
Sbjct: 171 DIDGHRDRYGDRDLEREREREREFDRYMDGRRDRDG-GRYSYRDRF 196

[Close]

BLAST of MC04g1462 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-12
Identity = 57/165 (34.55%), Postives = 75/165 (45.45%), Query Frame = 0


Query: 1   RCRGYGFITFATRRGMDNAIREMNGQEFDQGIISVAK-QPEIRGEYVEPCFSRGYLSGEI 60
           R RG+GFITF  ++ MD AI  MNG + D   I+V K QP   G   +    RG      
Sbjct: 46  RSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGR----- 105

Query: 61  ERGYLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSEN 120
           +RGY    RD  R  G     D C+ CG  GH+AR+CP    R         F   D   
Sbjct: 106 DRGY---DRDRSRPSGGRGGGD-CFKCGKPGHFARECPSESSR----DGGGRFSSKDDRY 165

Query: 121 SFGEDRDRYVDEQYDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR 163
           S  +DR    D++Y    DR   +D R  +K D+Y   +  +  R
Sbjct: 166 SSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSR 197

[Close]

BLAST of MC04g1462 vs. TAIR 10
Match: AT2G37340.3 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 31/94 (32.98%), Postives = 39/94 (41.49%), Query Frame = 0


Query: 3  RGYGFITFATRRGMDNAIREMNGQEFDQGIISVAKQPEIRGEYVEPCFSRGYLSGEIERG 62
          R Y F+ F   R  D+A   ++G++FD   I+V                      E  RG
Sbjct: 3  RDYAFVEFGDPRDADDARHYLDGRDFDGSRITV----------------------EFSRG 62

Query: 63 YLSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDC 97
             G RD   RG        C+NCG  GHWARDC
Sbjct: 63 APRGSRDFDSRGPPPGA-GRCFNCGVDGHWARDC 73

The following BLAST results are available for this feature:

BLAST of MC04g1462 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	7.7e-19	38.76	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	4.4e-14	36.14	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	1.3e-10	34.55	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
Q8VYA5	4.8e-05	32.98	Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
O81126	6.3e-05	33.64	Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]

BLAST of MC04g1462 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133674.1	8.60e-68	99.05	zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charanti...	[more]
XP_038885256.1	7.80e-45	55.36	glycine-rich RNA-binding protein RZ1C isoform X2 [Benincasa hispida]	[more]
XP_038885252.1	2.20e-44	55.36	glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_0388852...	[more]
XP_022990423.1	4.19e-43	55.81	glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine...	[more]
KAG6602289.1	4.19e-43	55.81	Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of MC04g1462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWP1	4.16e-68	99.05	zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Momordica charan...	[more]
A0A6J1JS04	2.03e-43	55.81	glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728...	[more]
A0A6J1HB93	2.03e-43	55.81	glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1BW59	5.14e-43	54.44	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=...	[more]
A0A6J1BW89	1.42e-42	54.44	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]

BLAST of MC04g1462 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	5.4e-20	38.76	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	3.1e-15	36.14	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	3.1e-15	36.14	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	9.3e-12	34.55	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G37340.3	3.4e-06	32.98	arginine/serine-rich zinc knuckle-containing protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 82..98 e-value: 5.3E-4 score: 29.3
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 82..97 e-value: 1.6E-7 score: 31.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 83..97 score: 10.542789
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..80 e-value: 4.2E-8 score: 35.2
None	No IPR available	GENE3D	4.10.60.10		coord: 81..140 e-value: 8.2E-8 score: 34.4
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 1..163
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..163
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..30 e-value: 3.1E-6 score: 26.9
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 69..104
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1462.1	MC04g1462.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding