MC04g1412 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1412
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Location	MC04: 22079756 .. 22079998 (+)
RNA-Seq Expression	MC04g1412
Synteny	MC04g1412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCCGCGGCCATGGATTGCTCTTCAATGACGCCGATCCCTCTGTCGAATTCAACCTTCCCGGCGGTGTCTTCGAAGGCCGATTCATTCCGGCGGGGAAGACCATCTCCGACAACGCGCGTGCTGTCATCGACGATCCTCAGAATCTCTACTTTGCCCTCGTCTCTCAACGCTGTATCCCTGTCCAATCCTTCGATTTCATCTACAATTTCTTGTTTAGAAACTCTATTACTTCGCTCCGG

mRNA sequence

TTCTTCCGCGGCCATGGATTGCTCTTCAATGACGCCGATCCCTCTGTCGAATTCAACCTTCCCGGCGGTGTCTTCGAAGGCCGATTCATTCCGGCGGGGAAGACCATCTCCGACAACGCGCGTGCTGTCATCGACGATCCTCAGAATCTCTACTTTGCCCTCGTCTCTCAACGCTGTATCCCTGTCCAATCCTTCGATTTCATCTACAATTTCTTGTTTAGAAACTCTATTACTTCGCTCCGG

Coding sequence (CDS)

TTCTTCCGCGGCCATGGATTGCTCTTCAATGACGCCGATCCCTCTGTCGAATTCAACCTTCCCGGCGGTGTCTTCGAAGGCCGATTCATTCCGGCGGGGAAGACCATCTCCGACAACGCGCGTGCTGTCATCGACGATCCTCAGAATCTCTACTTTGCCCTCGTCTCTCAACGCTGTATCCCTGTCCAATCCTTCGATTTCATCTACAATTTCTTGTTTAGAAACTCTATTACTTCGCTCCGG

Protein sequence

FFRGHGLLFNDADPSVEFNLPGGVFEGRFIPAGKTISDNARAVIDDPQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR

Homology

[Close]

BLAST of MC04g1412 vs. NCBI nr
Match: XP_022990393.1 (uncharacterized protein LOC111487264 [Cucurbita maxima] >XP_022990394.1 uncharacterized protein LOC111487264 [Cucurbita maxima] >XP_022990395.1 uncharacterized protein LOC111487264 [Cucurbita maxima])

HSP 1 Score: 119 bits (298), Expect = 3.64e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 97  FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 156

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 157 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 191

[Close]

BLAST of MC04g1412 vs. NCBI nr
Match: XP_022961358.1 (uncharacterized protein LOC111461937 [Cucurbita moschata] >XP_022961360.1 uncharacterized protein LOC111461937 [Cucurbita moschata] >XP_022961367.1 uncharacterized protein LOC111461937 [Cucurbita moschata])

HSP 1 Score: 119 bits (298), Expect = 3.89e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 101 FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 160

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 161 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 195

[Close]

BLAST of MC04g1412 vs. NCBI nr
Match: XP_023523379.1 (uncharacterized protein LOC111787593 [Cucurbita pepo subsp. pepo] >XP_023523386.1 uncharacterized protein LOC111787593 [Cucurbita pepo subsp. pepo] >XP_023523393.1 uncharacterized protein LOC111787593 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119 bits (298), Expect = 3.89e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 101 FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 160

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 161 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 195

[Close]

BLAST of MC04g1412 vs. NCBI nr
Match: KAG6602243.1 (Glycosyltransferase BC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (298), Expect = 3.89e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 101 FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 160

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 161 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 195

[Close]

BLAST of MC04g1412 vs. NCBI nr
Match: KAG7032923.1 (hypothetical protein SDJN02_06974, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (298), Expect = 8.30e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 101 FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 160

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 161 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 195

[Close]

BLAST of MC04g1412 vs. ExPASy TrEMBL
Match: A0A6J1JT55 (uncharacterized protein LOC111487264 OS=Cucurbita maxima OX=3661 GN=LOC111487264 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 1.76e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 97  FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 156

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 157 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 191

[Close]

BLAST of MC04g1412 vs. ExPASy TrEMBL
Match: A0A6J1HBZ3 (uncharacterized protein LOC111461937 OS=Cucurbita moschata OX=3662 GN=LOC111461937 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 1.89e-30
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGL +N    ADPSVE N PGGVF+GRFIPA +T   +           A AVIDD
Sbjct: 101 FFRGHGLRYNIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDD 160

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQRCIP+ SFDF+YNFLF+NS+TSLR
Sbjct: 161 PLNLYFALVSQRCIPIHSFDFMYNFLFKNSVTSLR 195

[Close]

BLAST of MC04g1412 vs. ExPASy TrEMBL
Match: A0A6J1BWZ7 (uncharacterized protein LOC111006101 OS=Momordica charantia OX=3673 GN=LOC111006101 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 5.08e-27
Identity = 59/85 (69.41%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FFRGHGLLFN    ADPSVE N PGGVFEGRFI AGKT   +           ARAVIDD
Sbjct: 99  FFRGHGLLFNIYIHADPSVEINPPGGVFEGRFIRAGKTARASPTLISAARRLLARAVIDD 158

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNF 71
           P NLYFALVSQRCIP+QSFDFI+N+
Sbjct: 159 PLNLYFALVSQRCIPIQSFDFIFNY 183

[Close]

BLAST of MC04g1412 vs. ExPASy TrEMBL
Match: A0A0A0K8K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046330 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 7.78e-27
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FF GH L +N    ADP+V+   PGGVF+GRF+PA KT+  +           ARAVIDD
Sbjct: 95  FFLGHELRYNIYIHADPTVQLTPPGGVFDGRFVPARKTLRASPTLISAARRLLARAVIDD 154

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQ CIP+ SFDF+Y+FLF+NSITSLR
Sbjct: 155 PLNLYFALVSQHCIPIHSFDFMYSFLFKNSITSLR 189

[Close]

BLAST of MC04g1412 vs. ExPASy TrEMBL
Match: A0A1S3C397 (uncharacterized protein LOC103496524 OS=Cucumis melo OX=3656 GN=LOC103496524 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.07e-26
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADPSVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVIDD 60
           FF GH L +N    ADP+V+   PGGVF+GRF+PA KT   +           ARAVIDD
Sbjct: 94  FFHGHELRYNIYIHADPTVQLTPPGGVFDGRFVPARKTYRASPTLISAARRLLARAVIDD 153

Query: 61  PQNLYFALVSQRCIPVQSFDFIYNFLFRNSITSLR 81
           P NLYFALVSQ CIP+ SFDF+Y+FLF+NSITSLR
Sbjct: 154 PLNLYFALVSQHCIPIHSFDFMYSFLFKNSITSLR 188

[Close]

BLAST of MC04g1412 vs. TAIR 10
Match: AT3G52060.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADP--SVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVI 60
           FF+GH  L+N    ADP  SV   L       +FIPA +T   +           A A++
Sbjct: 95  FFQGHQDLYNVYIHADPTSSVSPLLDSSSINAKFIPARRTARASPTLISAERRLLANAIL 154

Query: 61  DDPQNLYFALVSQRCIPVQSFDFIYNFLF 74
           DDP NLYFAL+SQ CIP+ SF +I+N LF
Sbjct: 155 DDPNNLYFALISQHCIPLHSFSYIHNHLF 183

[Close]

BLAST of MC04g1412 vs. TAIR 10
Match: AT3G52060.2 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 1   FFRGHGLLFN---DADP--SVEFNLPGGVFEGRFIPAGKTISDN-----------ARAVI 60
           FF+GH  L+N    ADP  SV   L       +FIPA +T   +           A A++
Sbjct: 95  FFQGHQDLYNVYIHADPTSSVSPLLDSSSINAKFIPARRTARASPTLISAERRLLANAIL 154

Query: 61  DDPQNLYFALVSQRCIPVQSFDFIYNFLF 74
           DDP NLYFAL+SQ CIP+ SF +I+N LF
Sbjct: 155 DDPNNLYFALISQHCIPLHSFSYIHNHLF 183

[Close]

BLAST of MC04g1412 vs. TAIR 10
Match: AT5G22070.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-10
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 1   FFRGHG-LLFN---DADPSVEFNLP--GGVFEGRFIPAGKTISDN------------ARA 60
           FF GH   L+N    ADP V    P  G VFE  FI   K  +              A A
Sbjct: 91  FFSGHSKSLYNVYVHADPFVNVTRPGNGSVFENAFIANAKRTARASPTLISATRRLLATA 150

Query: 61  VIDDPQNLYFALVSQRCIPVQSFDFIYNFLFRNSI 78
            +DDP N YFA++SQ CIP+ SF+++Y+ LF +SI
Sbjct: 151 FLDDPANTYFAVLSQYCIPLHSFNYVYSSLFESSI 185

[Close]

BLAST of MC04g1412 vs. TAIR 10
Match: AT4G32290.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 12  ADPSVEFNLP-GGVFEGRFIPAGKTISDN-----------ARAVIDDPQNLYFALVSQRC 71
           ADP+ E++ P  GVF  R I +  ++              A A++DDP N  FA++S  C
Sbjct: 128 ADPTREYDPPFSGVFLNRVIHSKPSLRHTPTLTAAARRLLAHALLDDPLNYMFAVISPSC 187

Query: 72  IPVQSFDFIYNFL 73
           +P++SFDF Y  L
Sbjct: 188 VPIRSFDFTYKTL 200

[Close]

BLAST of MC04g1412 vs. TAIR 10
Match: AT5G25330.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 5   HGLLFN---DADPSVEFNLPG--GVFEGRFIPAGK-------TISDNAR-----AVIDDP 64
           H  L+N     DP+ + + PG  G F+ R IP+ K       T+   AR     A+++DP
Sbjct: 108 HKSLYNVYVHVDPT-QKHKPGSHGTFQNRIIPSSKPAYRHTPTLISAARRLLAHALLEDP 167

Query: 65  QNLYFALVSQRCIPVQSFDFIYNFL 73
            N  F L+S  CIP+ SF+F Y  L
Sbjct: 168 SNYMFILLSPSCIPLHSFNFTYKTL 191

The following BLAST results are available for this feature:

BLAST of MC04g1412 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1412 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990393.1	3.64e-30	65.26	uncharacterized protein LOC111487264 [Cucurbita maxima] >XP_022990394.1 uncharac...	[more]
XP_022961358.1	3.89e-30	65.26	uncharacterized protein LOC111461937 [Cucurbita moschata] >XP_022961360.1 unchar...	[more]
XP_023523379.1	3.89e-30	65.26	uncharacterized protein LOC111787593 [Cucurbita pepo subsp. pepo] >XP_023523386....	[more]
KAG6602243.1	3.89e-30	65.26	Glycosyltransferase BC10, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032923.1	8.30e-30	65.26	hypothetical protein SDJN02_06974, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC04g1412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JT55	1.76e-30	65.26	uncharacterized protein LOC111487264 OS=Cucurbita maxima OX=3661 GN=LOC111487264...	[more]
A0A6J1HBZ3	1.89e-30	65.26	uncharacterized protein LOC111461937 OS=Cucurbita moschata OX=3662 GN=LOC1114619...	[more]
A0A6J1BWZ7	5.08e-27	69.41	uncharacterized protein LOC111006101 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0K8K2	7.78e-27	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046330 PE=4 SV=1	[more]
A0A1S3C397	1.07e-26	60.00	uncharacterized protein LOC103496524 OS=Cucumis melo OX=3656 GN=LOC103496524 PE=...	[more]

BLAST of MC04g1412 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52060.1	1.0e-11	43.82	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT3G52060.2	1.0e-11	43.82	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT5G22070.1	4.3e-10	41.05	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT4G32290.1	1.3e-06	36.99	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT5G25330.1	4.2e-05	36.47	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003406	Glycosyl transferase, family 14	PFAM	PF02485	Branch	coord: 42..74 e-value: 1.2E-5 score: 25.0
None	No IPR available	PANTHER	PTHR31042:SF108	EXPRESSED PROTEIN	coord: 1..76
IPR044174	Glycosyltransferase BC10-like	PANTHER	PTHR31042	CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1412.1	MC04g1412.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016757	glycosyltransferase activity