MC04g1400 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g1400
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionBED-type domain-containing protein
LocationMC04: 21935538 .. 21935756 (+)
RNA-Seq ExpressionMC04g1400
SyntenyMC04g1400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTTGATCCTGTTTGTTTGGAAGCCATTGATGTGATGATGGAAGATTGGTTGGCGGATGTTGAGGTAATGGAAGATGAGCACAAGAGGTGGATGAATGTGAAGGTCACTAGTCAGGAAACCTCGGTGGAACATAAATTTTCCAATGTGAATAGTTGTATTGACAACACAGATGAGAGAGCCAGCGAGGACACAATAGATACAGATGGTAATGATTTG

mRNA sequence

GCACTTGATCCTGTTTGTTTGGAAGCCATTGATGTGATGATGGAAGATTGGTTGGCGGATGTTGAGGTAATGGAAGATGAGCACAAGAGGTGGATGAATGTGAAGGTCACTAGTCAGGAAACCTCGGTGGAACATAAATTTTCCAATGTGAATAGTTGTATTGACAACACAGATGAGAGAGCCAGCGAGGACACAATAGATACAGATGGTAATGATTTG

Coding sequence (CDS)

GCACTTGATCCTGTTTGTTTGGAAGCCATTGATGTGATGATGGAAGATTGGTTGGCGGATGTTGAGGTAATGGAAGATGAGCACAAGAGGTGGATGAATGTGAAGGTCACTAGTCAGGAAACCTCGGTGGAACATAAATTTTCCAATGTGAATAGTTGTATTGACAACACAGATGAGAGAGCCAGCGAGGACACAATAGATACAGATGGTAATGATTTG

Protein sequence

ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDERASEDTIDTDGNDL
Homology
[Close]
BLAST of MC04g1400 vs. NCBI nr
Match: XP_022133726.1 (uncharacterized protein LOC111006240 isoform X2 [Momordica charantia])

HSP 1 Score: 145 bits (367), Expect = 1.31e-38
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER
Sbjct: 669 ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 728

Query: 61  ASEDTIDTDGNDL 73
           ASEDTIDTDGNDL
Sbjct: 729 ASEDTIDTDGNDL 741

[Close]
BLAST of MC04g1400 vs. NCBI nr
Match: XP_022133724.1 (uncharacterized protein LOC111006240 isoform X1 [Momordica charantia])

HSP 1 Score: 138 bits (347), Expect = 7.32e-36
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER
Sbjct: 669 ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 728

Query: 61  ASEDTIDTD 69
           ASEDTIDTD
Sbjct: 729 ASEDTIDTD 737

[Close]
BLAST of MC04g1400 vs. NCBI nr
Match: XP_031743736.1 (uncharacterized protein LOC101215032 [Cucumis sativus] >KAE8646650.1 hypothetical protein Csa_005143 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.39e-16
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           A+DPV  EAID  MEDW+      +DEHKRW++VKVT+QET VEHK SN +SCI +TDER
Sbjct: 654 AVDPVFSEAIDANMEDWV------KDEHKRWVDVKVTNQETLVEHKLSNRDSCIGSTDER 713

Query: 61  ASEDTIDTD 69
           ++E+T DTD
Sbjct: 714 STEETRDTD 716

[Close]
BLAST of MC04g1400 vs. NCBI nr
Match: XP_038884685.1 (uncharacterized protein LOC120075395 isoform X4 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 3.14e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTD 58
           A+DPV LEAIDV M+DW+      EDEHK W++VKVT+QET VEHK SN++SCID TD
Sbjct: 662 AVDPVFLEAIDVNMDDWV------EDEHKTWVDVKVTNQETFVEHKLSNMDSCIDCTD 713

[Close]
BLAST of MC04g1400 vs. NCBI nr
Match: XP_038884682.1 (uncharacterized protein LOC120075395 isoform X3 [Benincasa hispida] >XP_038884683.1 uncharacterized protein LOC120075395 isoform X3 [Benincasa hispida] >XP_038884684.1 uncharacterized protein LOC120075395 isoform X3 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 3.14e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTD 58
           A+DPV LEAIDV M+DW+      EDEHK W++VKVT+QET VEHK SN++SCID TD
Sbjct: 654 AVDPVFLEAIDVNMDDWV------EDEHKTWVDVKVTNQETFVEHKLSNMDSCIDCTD 705

[Close]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match: A0A6J1BVZ0 (uncharacterized protein LOC111006240 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006240 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 6.34e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER
Sbjct: 669 ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 728

Query: 61  ASEDTIDTDGNDL 73
           ASEDTIDTDGNDL
Sbjct: 729 ASEDTIDTDGNDL 741

[Close]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match: A0A6J1BWT8 (uncharacterized protein LOC111006240 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006240 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 3.54e-36
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER
Sbjct: 669 ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 728

Query: 61  ASEDTIDTD 69
           ASEDTIDTD
Sbjct: 729 ASEDTIDTD 737

[Close]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match: A0A0A0K9F6 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G052040 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.90e-16
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           A+DPV  EAID  MEDW+      +DEHKRW++VKVT+QET VEHK SN +SCI +TDER
Sbjct: 249 AVDPVFSEAIDANMEDWV------KDEHKRWVDVKVTNQETLVEHKLSNRDSCIGSTDER 308

Query: 61  ASEDTIDTD 69
           ++E+T DTD
Sbjct: 309 STEETRDTD 311

[Close]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match: A0A5D3BZ70 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00160 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.08e-13
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           A+DPV LEAID  MEDW+ DV+V   E        VT+QET VEHK SN +SCI +TDER
Sbjct: 655 AVDPVLLEAIDANMEDWV-DVKVTNQE------TLVTTQETLVEHKLSNRDSCIGSTDER 714

Query: 61  ASEDTIDTDGNDL 73
           ++E+T DTDGNDL
Sbjct: 715 STEETRDTDGNDL 720

[Close]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match: A0A1S3C533 (uncharacterized protein LOC103496546 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496546 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.64e-11
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 1   ALDPVCLEAIDVMMEDWLADVEVMEDEHKRWMNVKVTSQETSVEHKFSNVNSCIDNTDER 60
           A+DPV LEAID  MEDW+ DV+V   E        VT+QET VEHK SN +SCI +TDER
Sbjct: 655 AVDPVLLEAIDANMEDWV-DVKVTNQE------TLVTTQETLVEHKLSNRDSCIGSTDER 714

Query: 61  ASEDTIDTDG 70
           ++E+T DTDG
Sbjct: 715 STEETRDTDG 717

The following BLAST results are available for this feature:
BLAST of MC04g1400 vs.
Match NameE-valueIdentityDescription
BLAST of MC04g1400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133726.11.31e-38100.00uncharacterized protein LOC111006240 isoform X2 [Momordica charantia][more]
XP_022133724.17.32e-36100.00uncharacterized protein LOC111006240 isoform X1 [Momordica charantia][more]
XP_031743736.18.39e-1662.32uncharacterized protein LOC101215032 [Cucumis sativus] >KAE8646650.1 hypothetica... [more]
XP_038884685.13.14e-1365.52uncharacterized protein LOC120075395 isoform X4 [Benincasa hispida][more]
XP_038884682.13.14e-1365.52uncharacterized protein LOC120075395 isoform X3 [Benincasa hispida] >XP_03888468... [more]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BVZ06.34e-39100.00uncharacterized protein LOC111006240 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1BWT83.54e-36100.00uncharacterized protein LOC111006240 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A0A0K9F61.90e-1662.32Dimer_Tnp_hAT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0520... [more]
A0A5D3BZ702.08e-1360.27BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C5331.64e-1158.57uncharacterized protein LOC103496546 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MC04g1400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g1400.1MC04g1400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046983 protein dimerization activity