MC04g1399 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1399
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Epidermal patterning factor-like protein
Location	MC04: 21926932 .. 21927120 (-)
RNA-Seq Expression	MC04g1399
Synteny	MC04g1399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGCTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGCTCCCATGCATGCGGTCCATGTTTTCCATGCAAAAGGGTGATGGTGAGCTTCAAGTGCTCTGTTGCAGAGTCCTGTCCAACTGTTTACAGATGCATGTGTAAAGGGAAATATTACCATGTACCCTCCAAT

mRNA sequence

AGGGCTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGCTCCCATGCATGCGGTCCATGTTTTCCATGCAAAAGGGTGATGGTGAGCTTCAAGTGCTCTGTTGCAGAGTCCTGTCCAACTGTTTACAGATGCATGTGTAAAGGGAAATATTACCATGTACCCTCCAAT

Coding sequence (CDS)

AGGGCTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGCTCCCATGCATGCGGTCCATGTTTTCCATGCAAAAGGGTGATGGTGAGCTTCAAGTGCTCTGTTGCAGAGTCCTGTCCAACTGTTTACAGATGCATGTGTAAAGGGAAATATTACCATGTACCCTCCAAT

Protein sequence

RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN

Homology

[Close]

BLAST of MC04g1399 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.4e-23
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 8   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 63
           ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  +YRC C+G+YYHVPS
Sbjct: 64  MEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTCRGRYYHVPS 118

[Close]

BLAST of MC04g1399 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.3e-18
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 13  TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 63
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP VY+C+CKGKYYHVPS
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYHVPS 170

[Close]

BLAST of MC04g1399 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-12
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 14  GSSLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTVYRCMCKGKYYHVP 62
           GS LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y VP
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of MC04g1399 vs. NCBI nr
Match: XP_022134337.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Momordica charantia])

HSP 1 Score: 143 bits (360), Expect = 2.00e-42
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 56  RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 115

Query: 61  PSN 63
           PSN
Sbjct: 116 PSN 118

[Close]

BLAST of MC04g1399 vs. NCBI nr
Match: XP_022990492.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita maxima])

HSP 1 Score: 142 bits (357), Expect = 5.73e-42
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           +AKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 56  KAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 115

Query: 61  PSN 63
           PSN
Sbjct: 116 PSN 118

[Close]

BLAST of MC04g1399 vs. NCBI nr
Match: XP_022957958.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita moschata] >XP_023518828.1 protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (357), Expect = 5.73e-42
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           +AKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 56  KAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 115

Query: 61  PSN 63
           PSN
Sbjct: 116 PSN 118

[Close]

BLAST of MC04g1399 vs. NCBI nr
Match: KAA0031689.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo var. makuwa] >TYK04421.1 protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 1.20e-41
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
          + KEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 34 KTKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 93

Query: 61 PSN 63
          PSN
Sbjct: 94 PSN 96

[Close]

BLAST of MC04g1399 vs. NCBI nr
Match: XP_008456675.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo])

HSP 1 Score: 140 bits (353), Expect = 2.26e-41
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           + KEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 55  KTKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 114

Query: 61  PSN 63
           PSN
Sbjct: 115 PSN 117

[Close]

BLAST of MC04g1399 vs. ExPASy TrEMBL
Match: A0A6J1BZC6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111006622 PE=3 SV=1)

HSP 1 Score: 143 bits (360), Expect = 9.68e-43
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 56  RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 115

Query: 61  PSN 63
           PSN
Sbjct: 116 PSN 118

[Close]

BLAST of MC04g1399 vs. ExPASy TrEMBL
Match: A0A6J1JIW8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487339 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 2.78e-42
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           +AKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 56  KAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 115

Query: 61  PSN 63
           PSN
Sbjct: 116 PSN 118

[Close]

BLAST of MC04g1399 vs. ExPASy TrEMBL
Match: A0A6J1H1R6 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111459333 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 2.78e-42
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           +AKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 56  KAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 115

Query: 61  PSN 63
           PSN
Sbjct: 116 PSN 118

[Close]

BLAST of MC04g1399 vs. ExPASy TrEMBL
Match: A0A5D3BXL8 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00170 PE=3 SV=1)

HSP 1 Score: 140 bits (353), Expect = 5.79e-42
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
          + KEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 34 KTKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 93

Query: 61 PSN 63
          PSN
Sbjct: 94 PSN 96

[Close]

BLAST of MC04g1399 vs. ExPASy TrEMBL
Match: A0A1S3C3W6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103496551 PE=3 SV=1)

HSP 1 Score: 140 bits (353), Expect = 1.10e-41
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1   RAKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 60
           + KEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV
Sbjct: 55  KTKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHV 114

Query: 61  PSN 63
           PSN
Sbjct: 115 PSN 117

[Close]

BLAST of MC04g1399 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein )

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-24
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 8   MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 63
           ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  +YRC C+G+YYHVPS
Sbjct: 64  MEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTCRGRYYHVPS 118

[Close]

BLAST of MC04g1399 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). )

HSP 1 Score: 90.5 bits (223), Expect = 5.2e-19
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 13  TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 63
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP VY+C+CKGKYYHVPS
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYHVPS 170

[Close]

BLAST of MC04g1399 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 )

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-13
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 14  GSSLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTVYRCMCKGKYYHVP 62
           GS LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y VP
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

The following BLAST results are available for this feature:

BLAST of MC04g1399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LC53	4.4e-23	78.18	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE...	[more]
C4B8C5	7.3e-18	70.00	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q8S8I4	2.1e-12	62.75	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE...	[more]

BLAST of MC04g1399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134337.1	2.00e-42	100.00	protein EPIDERMAL PATTERNING FACTOR 2-like [Momordica charantia]	[more]
XP_022990492.1	5.73e-42	98.41	protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita maxima]	[more]
XP_022957958.1	5.73e-42	98.41	protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita moschata] >XP_023518828.1 ...	[more]
KAA0031689.1	1.20e-41	96.83	protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo var. makuwa] >TYK04421.1 pro...	[more]
XP_008456675.1	2.26e-41	96.83	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo]	[more]

BLAST of MC04g1399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZC6	9.68e-43	100.00	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JIW8	2.78e-42	98.41	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1H1R6	2.78e-42	98.41	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3BXL8	5.79e-42	96.83	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C3W6	1.10e-41	96.83	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103496551...	[more]

BLAST of MC04g1399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34245.1	3.1e-24	78.18	Putative membrane lipoprotein	[more]
AT1G71866.1	5.2e-19	70.00	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Put...	[more]
AT2G20875.1	1.5e-13	62.75	epidermal patterning factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 13..60 e-value: 2.0E-15 score: 56.5
None	No IPR available	PANTHER	PTHR33109:SF6	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 7	coord: 3..62
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 3..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1399.1	MC04g1399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane