MC04g1398 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1398
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	SHSP domain-containing protein
Location	MC04: 21925013 .. 21925273 (-)
RNA-Seq Expression	MC04g1398
Synteny	MC04g1398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTTACATCGAAATTCGGATTACCGACTGATTCTACTGGAATCATCCCCGCCGTTTCCCCTAGAGCAGCAAGGGCTTCCATTCTCGTGATTGTGATTATCCCCGTGGGCATCATCTTCCTGATCGCTGTCGTCCTCGTCAAACGGCTTCTGCTTGTGGAATATGCAGCACTTCTTCGAGCTCTTCTTCTGCATGAACTCGTTGTCGACGGTCCCTTCCTTCCAAGAAACCTTCTTCTTCTTCCGATTGAGACGGAGCAC

mRNA sequence

AGCTTTACATCGAAATTCGGATTACCGACTGATTCTACTGGAATCATCCCCGCCGTTTCCCCTAGAGCAGCAAGGGCTTCCATTCTCGTGATTGTGATTATCCCCGTGGGCATCATCTTCCTGATCGCTGTCGTCCTCGTCAAACGGCTTCTGCTTGTGGAATATGCAGCACTTCTTCGAGCTCTTCTTCTGCATGAACTCGTTGTCGACGGTCCCTTCCTTCCAAGAAACCTTCTTCTTCTTCCGATTGAGACGGAGCAC

Coding sequence (CDS)

AGCTTTACATCGAAATTCGGATTACCGACTGATTCTACTGGAATCATCCCCGCCGTTTCCCCTAGAGCAGCAAGGGCTTCCATTCTCGTGATTGTGATTATCCCCGTGGGCATCATCTTCCTGATCGCTGTCGTCCTCGTCAAACGGCTTCTGCTTGTGGAATATGCAGCACTTCTTCGAGCTCTTCTTCTGCATGAACTCGTTGTCGACGGTCCCTTCCTTCCAAGAAACCTTCTTCTTCTTCCGATTGAGACGGAGCAC

Protein sequence

SFTSKFGLPTDSTGIIPAVSPRAARASILVIVIIPVGIIFLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH

Homology

[Close]

BLAST of MC04g1398 vs. NCBI nr
Match: RXH77145.1 (hypothetical protein DVH24_023419 [Malus domestica])

HSP 1 Score: 59.7 bits (143), Expect = 4.22e-08
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 28 ILVIVIIPVGIIFLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH 87
          ++VIV++ V +  ++AVVLV+ LLLVE AAL  ALLLHELVV  PFLPR+LLLLPI+ +H
Sbjct: 3  VIVIVVVAVMVFVIVAVVLVEGLLLVEDAALFGALLLHELVVHRPFLPRHLLLLPIQPQH 62

[Close]

BLAST of MC04g1398 vs. NCBI nr
Match: PON72541.1 (hypothetical protein PanWU01x14_065760, partial [Parasponia andersonii])

HSP 1 Score: 47.4 bits (111), Expect = 4.16e-04
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 39  IFLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH 87
           IF IAVVLVK LL VE AAL   LLLH+LVV  P  PR LLLLP++   
Sbjct: 93  IFFIAVVLVKGLLFVEDAALFGTLLLHKLVVHSPLFPRYLLLLPVKPHR 141

[Close]

BLAST of MC04g1398 vs. NCBI nr
Match: POO00180.1 (hypothetical protein TorRG33x02_039580, partial [Trema orientale])

HSP 1 Score: 46.6 bits (109), Expect = 4.40e-04
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 40  FLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH 87
           F IAVVLVK LLLV+ AAL   LLLH+LVV  P  PR LLLLP++   
Sbjct: 58  FFIAVVLVKGLLLVKDAALFGTLLLHKLVVHSPLFPRYLLLLPVKPHR 105

[Close]

BLAST of MC04g1398 vs. ExPASy TrEMBL
Match: A0A0A0K8M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052060 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.39e-18
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1   SFTSKFGLPTDSTGIIPAVSPRAARASI--LVIVIIPVGIIFLIAVVLVKRLLLVEYAAL 60
           SFTS+ GL  D+TG IPAVSPR  R  I  ++++ + + II LIA VLV+  LLV+Y AL
Sbjct: 43  SFTSESGLSIDTTGTIPAVSPRRTRVPIPMMMMMTMIIIIILLIAAVLVEGFLLVKYTAL 102

Query: 61  LRALLLHELVVDGPFLPRNLLLLPIETEH 87
           L  L LHELVVDG FLP +LLLLPIETEH
Sbjct: 103 LGTLFLHELVVDGTFLPGDLLLLPIETEH 131

[Close]

BLAST of MC04g1398 vs. ExPASy TrEMBL
Match: A0A498I4X7 (SHSP domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_023419 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.04e-08
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 28 ILVIVIIPVGIIFLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH 87
          ++VIV++ V +  ++AVVLV+ LLLVE AAL  ALLLHELVV  PFLPR+LLLLPI+ +H
Sbjct: 3  VIVIVVVAVMVFVIVAVVLVEGLLLVEDAALFGALLLHELVVHRPFLPRHLLLLPIQPQH 62

[Close]

BLAST of MC04g1398 vs. ExPASy TrEMBL
Match: A0A2P5DGW4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_065760 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.01e-04
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 39  IFLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH 87
           IF IAVVLVK LL VE AAL   LLLH+LVV  P  PR LLLLP++   
Sbjct: 93  IFFIAVVLVKGLLFVEDAALFGTLLLHKLVVHSPLFPRYLLLLPVKPHR 141

[Close]

BLAST of MC04g1398 vs. ExPASy TrEMBL
Match: A0A2P5FQU7 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_039580 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.13e-04
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 40  FLIAVVLVKRLLLVEYAALLRALLLHELVVDGPFLPRNLLLLPIETEH 87
           F IAVVLVK LLLV+ AAL   LLLH+LVV  P  PR LLLLP++   
Sbjct: 58  FFIAVVLVKGLLLVKDAALFGTLLLHKLVVHSPLFPRYLLLLPVKPHR 105

The following BLAST results are available for this feature:

BLAST of MC04g1398 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1398 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH77145.1	4.22e-08	63.33	hypothetical protein DVH24_023419 [Malus domestica]	[more]
PON72541.1	4.16e-04	63.27	hypothetical protein PanWU01x14_065760, partial [Parasponia andersonii]	[more]
POO00180.1	4.40e-04	62.50	hypothetical protein TorRG33x02_039580, partial [Trema orientale]	[more]

BLAST of MC04g1398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8M1	1.39e-18	61.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052060 PE=4 SV=1	[more]
A0A498I4X7	2.04e-08	63.33	SHSP domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_023419 PE=4 S...	[more]
A0A2P5DGW4	2.01e-04	63.27	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5FQU7	2.13e-04	62.50	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_039...	[more]

BLAST of MC04g1398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1398.1	MC04g1398.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane