MC04g1334 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g1334
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 21395602 .. 21395931 (+)
RNA-Seq ExpressionMC04g1334
SyntenyMC04g1334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCCGGCGGCATGCGCATGCCTGGTGTTGGCCATTTTGGTCGCATCCTTCTCTCCAAGTTCGCCGTCCAGAGTCGCCGGCGGAAAATATGGTAATTCTTCTCCGGCTCCTCCGGCGGCGCCACCAAAGAAGCTCCACCGTTCACTCATATTCCATCACCAGAGCTCTCCCCCGCCGTCGCCGCCGGTGAAACCCCTCCGCCGTCTAAATGCCGACGGTAAAGACAAGTGTTCCGAAGAACCCGAGTATGGACATGAAGATGCAAAGCCGAATCGGAGTGAGGAGCCTTGGCCGAAGTGCCACGTGTCAAAATCGCCACCACCTCCTTTC

mRNA sequence

GCTCCGGCGGCATGCGCATGCCTGGTGTTGGCCATTTTGGTCGCATCCTTCTCTCCAAGTTCGCCGTCCAGAGTCGCCGGCGGAAAATATGGTAATTCTTCTCCGGCTCCTCCGGCGGCGCCACCAAAGAAGCTCCACCGTTCACTCATATTCCATCACCAGAGCTCTCCCCCGCCGTCGCCGCCGGTGAAACCCCTCCGCCGTCTAAATGCCGACGGTAAAGACAAGTGTTCCGAAGAACCCGAGTATGGACATGAAGATGCAAAGCCGAATCGGAGTGAGGAGCCTTGGCCGAAGTGCCACGTGTCAAAATCGCCACCACCTCCTTTC

Coding sequence (CDS)

GCTCCGGCGGCATGCGCATGCCTGGTGTTGGCCATTTTGGTCGCATCCTTCTCTCCAAGTTCGCCGTCCAGAGTCGCCGGCGGAAAATATGGTAATTCTTCTCCGGCTCCTCCGGCGGCGCCACCAAAGAAGCTCCACCGTTCACTCATATTCCATCACCAGAGCTCTCCCCCGCCGTCGCCGCCGGTGAAACCCCTCCGCCGTCTAAATGCCGACGGTAAAGACAAGTGTTCCGAAGAACCCGAGTATGGACATGAAGATGCAAAGCCGAATCGGAGTGAGGAGCCTTGGCCGAAGTGCCACGTGTCAAAATCGCCACCACCTCCTTTC

Protein sequence

APAACACLVLAILVASFSPSSPSRVAGGKYGNSSPAPPAAPPKKLHRSLIFHHQSSPPPSPPVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF
Homology
BLAST of MC04g1334 vs. NCBI nr
Match: KAE8646677.1 (hypothetical protein Csa_023590, partial [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 3.67e-18
Identity = 54/102 (52.94%), Postives = 62/102 (60.78%), Query Frame = 0

Query: 15  ASFSPSSPSRVAGGKYGNSSPAPPAAPPKKLHRSLIFHHQ-SSPPPSP-----PVKPLRR 74
           ASFSPSS S  A        P PP  P     R L+FH+  SS PPSP     P K  RR
Sbjct: 1   ASFSPSSLSIAATAAPSYGIPYPPPLP-----RPLLFHNDHSSLPPSPAAEEYPAKSPRR 60

Query: 75  LNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
           +N + KDKCSE P  G++DAKPN+  +PWPKC V KSPPPPF
Sbjct: 61  VNGERKDKCSEAPRNGNKDAKPNK--DPWPKCPVPKSPPPPF 95

BLAST of MC04g1334 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 5.64e-18
Identity = 58/111 (52.25%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 8   LVLAILVA--SFSPSSPSRVAGGKYGNSSPAPPAAPPKKLHRSLIFHHQ-SSPPPSP--- 67
           L LAI +A  SFSPSS S  A     +  P PP  P     RSL+FH+  SS P SP   
Sbjct: 8   LFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLP-----RSLLFHNDHSSLPQSPAAE 67

Query: 68  --PVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
             P KPL+R+N + KDKC+E P  G++DAK   S++PWPKC VSKSPPPPF
Sbjct: 68  EYPAKPLQRVNGERKDKCTEAPRNGNKDAK--SSKDPWPKCPVSKSPPPPF 111

BLAST of MC04g1334 vs. NCBI nr
Match: KAA0054910.1 (hypothetical protein E6C27_scaffold43052G00380 [Cucumis melo var. makuwa] >TYK22698.1 hypothetical protein E5676_scaffold1163G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 4.75e-05
Identity = 48/116 (41.38%), Postives = 60/116 (51.72%), Query Frame = 0

Query: 8   LVLAIL-VASFSPSSPSRV-AGGKYG---NSSPAPPAAPPKKLHRSLIF---HHQSSPPP 67
           LV AIL VA  S SSP R  A  +Y    + SP PP      LH+ +I    HH SS P 
Sbjct: 5   LVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPP------LHQRIILFFSHHVSSSPR 64

Query: 68  S-----PPVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
           S        K LR + A+ K  C +EPE  ++D  P  S+EPWP+C +    PPPF
Sbjct: 65  SWSNNWSSRKLLRHIKAERKYNCLKEPEKQYKD--PANSQEPWPRCPMPAFSPPPF 112

BLAST of MC04g1334 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.19e-19
Identity = 60/111 (54.05%), Postives = 68/111 (61.26%), Query Frame = 0

Query: 8   LVLAIL--VASFSPSSPSRVAGGKYGNSSPAPPAAPPKKLHRSLIFHHQ-SSPPPSP--- 67
           L LAIL  VASFSPSS S  A        P PP  P     R L+FH+  SS PPSP   
Sbjct: 8   LFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLP-----RPLLFHNDHSSLPPSPAAE 67

Query: 68  --PVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
             P K  RR+N + KDKCSE P  G++DAKPN+  +PWPKC V KSPPPPF
Sbjct: 68  EYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNK--DPWPKCPVPKSPPPPF 111

BLAST of MC04g1334 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.73e-18
Identity = 58/111 (52.25%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 8   LVLAILVA--SFSPSSPSRVAGGKYGNSSPAPPAAPPKKLHRSLIFHHQ-SSPPPSP--- 67
           L LAI +A  SFSPSS S  A     +  P PP  P     RSL+FH+  SS P SP   
Sbjct: 8   LFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLP-----RSLLFHNDHSSLPQSPAAE 67

Query: 68  --PVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
             P KPL+R+N + KDKC+E P  G++DAK   S++PWPKC VSKSPPPPF
Sbjct: 68  EYPAKPLQRVNGERKDKCTEAPRNGNKDAK--SSKDPWPKCPVSKSPPPPF 111

BLAST of MC04g1334 vs. ExPASy TrEMBL
Match: A0A5A7UHY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00150 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.30e-05
Identity = 48/116 (41.38%), Postives = 60/116 (51.72%), Query Frame = 0

Query: 8   LVLAIL-VASFSPSSPSRV-AGGKYG---NSSPAPPAAPPKKLHRSLIF---HHQSSPPP 67
           LV AIL VA  S SSP R  A  +Y    + SP PP      LH+ +I    HH SS P 
Sbjct: 5   LVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPP------LHQRIILFFSHHVSSSPR 64

Query: 68  S-----PPVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
           S        K LR + A+ K  C +EPE  ++D  P  S+EPWP+C +    PPPF
Sbjct: 65  SWSNNWSSRKLLRHIKAERKYNCLKEPEKQYKD--PANSQEPWPRCPMPAFSPPPF 112

BLAST of MC04g1334 vs. ExPASy TrEMBL
Match: A0A0A0KCN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058710 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.24e-04
Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 9   VLAILV-ASFSPSSPSRV-AGGKYGNSSPAPPAAPPKKLHRSLI--FHHQSSPPP----- 68
           V AILV A  SP+SP R  A  +Y     + P  P   LH  +I  F H  SP P     
Sbjct: 6   VFAILVVAVISPTSPWRASADERYDYLLSSSPLLP---LHHPIILFFSHHVSPSPWSWSN 65

Query: 69  SPPVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 110
               K LR +N + K  C +EPE   +D  P  S++PWP+C +   PPPPF
Sbjct: 66  RSSRKLLRHINPERKYNCLKEPEKQFKD--PVSSQKPWPRCPMPAFPPPPF 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646677.13.67e-1852.94hypothetical protein Csa_023590, partial [Cucumis sativus][more]
KAA0054906.15.64e-1852.25hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22... [more]
KAA0054910.14.75e-0541.38hypothetical protein E6C27_scaffold43052G00380 [Cucumis melo var. makuwa] >TYK22... [more]
Match NameE-valueIdentityDescription
A0A0A0KEF91.19e-1954.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1[more]
A0A5D3DGG92.73e-1852.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UHY52.30e-0541.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCN71.24e-0439.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g1334.1MC04g1334.1mRNA