MC04g1249 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1249
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	cold shock protein 2-like
Location	MC04: 20550885 .. 20554014 (-)
RNA-Seq Expression	MC04g1249
Synteny	MC04g1249

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGTCTCATTTCGGCGCCTTAATTAATTTTCCTTTTAAACGTCTTTTTTTATTGGATTACGTGTTCGTTTGCGGTTAGCTTGGTTATCTCGGTAGATGACGTGGCAATAGCCTAATGGATAAGGGCGAACCTATCTGGAGCTGATAAAGCAGCTCACAGCCGTCCGATCGTATAACTACTGGGCCCTACTTCACCCGATTCTCTCCTTTTCCCTCGAATCTCTCCTCCCGGAGATATCCACCTTCGAAACTGAATCAATTCTCACACTCAACTGTCCGCCATTGATTACTTCCTGTGAATGGCCGGCAGCTTAATCAACTGAAATCTACATTGCGAGAAGCTTCAGGGCTGCTGTTCTTAATTTTGCTTTTCCATGGCTGAGGTGAAGAGATCCAGCGGCACTGTGAGGTGGTTTAGTGCGCAGAAGGGCTTTGGGTTCATAGCTCCAGATGATGCTACCGATGATCTTTTCGTCCACCAGACGTCGATTCGGTCCGAAGGATTTCGGACTCTTTTCGATGGTCAGGCCGTTGAGTATTCAATCGATTATGACGAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGAATATGGAGGGGGGCGTGGGGGTGGGAGAGGTAGAGGTAGAGGAGGCGGTTATGGAAGGTTCGGTGGAGGAGGCTACGGAGGAGGCGGCGGCGGCCGTGGTTTTGGCAGAGGAGGGAGGTACGATGGCCCCAGTGGTGGCTTCGGCGGAGGTGGTCGTGGCGGGGGTGAGTGCTACAATTGTGGCCGTGTGGGTCATTTAGCGAGGGATTGTTATCGGGGAAACGGCGGTGCCGGTGCGCCTCCCGGCCGTGGCGGGACTCGTAGATACGGAGGTGGTCGGAGTTATGGCGGCGGAGGCGGAGGCGGTGGCGCCGGGGGTTGTTTTAATTGTGGAGATGCAGGGCATTTTGCCAGGGAATGTCCAAATGAAAGCGTATAAAGAATGCGGGTCTTCCTTTAAGCGGTATTTATTCTTTTTCTGAAGATTATTTTTGGTTTTGGACTGTTAAATTTTGGTGCAAATTTCTGGGATTATAAGTGCATTGGTGACTGCGAGTCTGAAATTGATGGCACGAGGATCCGGGACAATAAACCATAGGGCTTCAATTGATCATTGTTTCTCCTTTTGGGTGTTCGATAATTTGCTGTTCAGAGTTAGATGATGAAAATTGAAAGCAATTGCTTGTATATGCTATACCTTACTGGCATTTTCTGTTCATTCTTCTTTTGATTGTTGTGATATTTCTTAACATGTTATATATTGATATATGTAATCCGTCAAGAGTATATGTTCATACCATTTTCTTTTGTATTTCTAATGTTTCGTCTTTGTCAATTACTGTAATGTTTTCCTTTTTCTTTCTTTTCACATTATCAGTTACTTCCATTATGGTCTTTGTTTTCTCTGGAAACCGAATGTATTAGCTCTTGTAGACACCCTAAGAGTATTTTTGGAGATTCTTTAATCTCTCTTTGGATAAGATATTAGCCATTTTGGGGTTCCAATGATCTGTTTTATGGCTGGATTTGAATTTTCTCCTTTTTGTCTGTCAAATTCTTCACATTTGACAATTCTAAATAGTAACTTCAGCCGCTGGTGCTGTTCTTTATGTTCTGTAAGTTCTTATAGGACAATACTAGTCATCATTTTTAGTTCCATGATGTATGTGATTACTGCATCATGTTTGAAACTTTCAATTCTCTGCTTTCTGAGGAGTTATGGAATTGTTTAGGCCCTCTTTAATTACCGTTTTCTTTTGCTTTTTGTTTTAAAAATCTATGTTTTTGCTTCCTTACAATTTTTTTTGGTGTGTTTTCAACTTTCTTAAAAACACTCTTATAGAAAAAACTTTCTAAAAAACACACTTGAATGTTGGTCCAAATTTTGAAAACAAAAACAAGTTGTTAAGAACTACTTTGTTTTGTTTTCAAAATTTGACTTCGATTTTAAAAGTAGATAACAAAGCAAATAAATACATAGATTGAAGTAGTATTTATAAATTAAATTTTAAAATAAATAGTGAAATGGTTATCAAACCGGGCCTTTTAACTTTTTGTTTTGTTTTCCCATAGGTTCACATTTGTAAAAGACTGCGATGAGATGCTTGTAGTTTGTTGATTTGCATTATGCTTCTAAATCTTCATCTTCCTTCTCAACACATAGGTTAATGGAACTGTTGCGTTCCGTTATTAGGTGATGGCTGAAAGAACTTAACATCTAACTATGCAGTCCACTGGAAAGCAATTGAAACAGTTTATAATCACACTTTTTCTTGCCTTTACTTAGTATATAAGCCAATGCTTAACTTTAAAGGGAAACTCTATACTGATTATTTATGCTTCAAACTAGATGGGCAATAAACTTCATTGTAAGTTGTCAGGTTTAGCTAGATGATCATGACAAGGTAGCAAGTTTCTCCATTCGTTTATCATTTTTCATAACAATAAAGTTTAACAGAGAGAAGAAAATATGAAACCCATGTGCCAAAGTTGGATGGGATCTATGACAATCTTAGATGAATACGACAGTATCATCAAGGTATTTGGCTTACGAGTTGAGTTTATGAAAATAAACGTCTAATTAGTGACGCGAGTGGAGAAAACACATTGTGCTCCCTCACGAGGATATCTTGGATAAATGTATATTCTTTTGTCTGACTCAATTATATGTCTTTGCTTTGATGTATAGCGGTCTAGTCTAGGCTTACGTATCAAGAATGAATTATTGGAGGAGATCGTTACAATGAGACTGATGATGTTATACTGTTATATTTATGAGAGAAAAATCACAAAAGTATCTATGGTGATTTTTTAATCTACATCTCATGGTCATTAGGGGACGACCACATTACAACAACCTTATTCTATAGTTTTTCCAAATGTCAGGAGAATAGATAAAACTGTATTGTATACTTAGTTAAAACTTGAGAGCAATGGTCACATTGATACATTTTACTAAAGGGTCATTACTCTCTCTTTATTATATTTAGGTTATTTTTTATACTACTTTTCAACTACACATTTCTCATTTATGAAAAGTTCTTAGTCCACGACTACCAAATAAAGAGAATTATCAATCAAAG

mRNA sequence

GTCCGTCTCATTTCGGCGCCTTAATTAATTTTCCTTTTAAACGTCTTTTTTTATTGGATTACGTGTTCGTTTGCGGTTAGCTTGGTTATCTCGGTAGATGACGTGGCAATAGCCTAATGGATAAGGGCGAACCTATCTGGAGCTGATAAAGCAGCTCACAGCCGTCCGATCGTATAACTACTGGGCCCTACTTCACCCGATTCTCTCCTTTTCCCTCGAATCTCTCCTCCCGGAGATATCCACCTTCGAAACTGAATCAATTCTCACACTCAACTGTCCGCCATTGATTACTTCCTGTGAATGGCCGGCAGCTTAATCAACTGAAATCTACATTGCGAGAAGCTTCAGGGCTGCTGTTCTTAATTTTGCTTTTCCATGGCTGAGGTGAAGAGATCCAGCGGCACTGTGAGGTGGTTTAGTGCGCAGAAGGGCTTTGGGTTCATAGCTCCAGATGATGCTACCGATGATCTTTTCGTCCACCAGACGTCGATTCGGTCCGAAGGATTTCGGACTCTTTTCGATGGTCAGGCCGTTGAGTATTCAATCGATTATGACGAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGAATATGGAGGGGGGCGTGGGGGTGGGAGAGGTAGAGGTAGAGGAGGCGGTTATGGAAGGTTCGGTGGAGGAGGCTACGGAGGAGGCGGCGGCGGCCGTGGTTTTGGCAGAGGAGGGAGGTACGATGGCCCCAGTGGTGGCTTCGGCGGAGGTGGTCGTGGCGGGGGTGAGTGCTACAATTGTGGCCGTGTGGGTCATTTAGCGAGGGATTGTTATCGGGGAAACGGCGGTGCCGGTGCGCCTCCCGGCCGTGGCGGGACTCGTAGATACGGAGGTGGTCGGAGTTATGGCGGCGGAGGCGGAGGCGGTGGCGCCGGGGGTTGTTTTAATTGTGGAGATGCAGGGCATTTTGCCAGGGAATGTCCAAATGAAAGCGTATAAAGAATGCGGGTCTTCCTTTAAGCGGTTCACATTTGTAAAAGACTGCGATGAGATGCTTGTAGTTTGTTGATTTGCATTATGCTTCTAAATCTTCATCTTCCTTCTCAACACATAGGTTAATGGAACTGTTGCGTTCCGTTATTAGGTGATGGCTGAAAGAACTTAACATCTAACTATGCAGTCCACTGGAAAGCAATTGAAACAGTTTATAATCACACTTTTTCTTGCCTTTACTTAGTATATAAGCCAATGCTTAACTTTAAAGGGAAACTCTATACTGATTATTTATGCTTCAAACTAGATGGGCAATAAACTTCATTGTAAGTTGTCAGGTTTAGCTAGATGATCATGACAAGGTAGCAAGTTTCTCCATTCGTTTATCATTTTTCATAACAATAAAGTTTAACAGAGAGAAGAAAATATGAAACCCATGTGCCAAAGTTGGATGGGATCTATGACAATCTTAGATGAATACGACAGTATCATCAAGGTATTTGGCTTACGAGTTGAGTTTATGAAAATAAACGTCTAATTAGTGACGCGAGTGGAGAAAACACATTGTGCTCCCTCACGAGGATATCTTGGATAAATGTATATTCTTTTGTCTGACTCAATTATATGTCTTTGCTTTGATGTATAGCGGTCTAGTCTAGGCTTACGTATCAAGAATGAATTATTGGAGGAGATCGTTACAATGAGACTGATGATGTTATACTGTTATATTTATGAGAGAAAAATCACAAAAGTATCTATGGTGATTTTTTAATCTACATCTCATGGTCATTAGGGGACGACCACATTACAACAACCTTATTCTATAGTTTTTCCAAATGTCAGGAGAATAGATAAAACTGTATTGTATACTTAGTTAAAACTTGAGAGCAATGGTCACATTGATACATTTTACTAAAGGGTCATTACTCTCTCTTTATTATATTTAGGTTATTTTTTATACTACTTTTCAACTACACATTTCTCATTTATGAAAAGTTCTTAGTCCACGACTACCAAATAAAGAGAATTATCAATCAAAG

Coding sequence (CDS)

ATGGCTGAGGTGAAGAGATCCAGCGGCACTGTGAGGTGGTTTAGTGCGCAGAAGGGCTTTGGGTTCATAGCTCCAGATGATGCTACCGATGATCTTTTCGTCCACCAGACGTCGATTCGGTCCGAAGGATTTCGGACTCTTTTCGATGGTCAGGCCGTTGAGTATTCAATCGATTATGACGAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGAATATGGAGGGGGGCGTGGGGGTGGGAGAGGTAGAGGTAGAGGAGGCGGTTATGGAAGGTTCGGTGGAGGAGGCTACGGAGGAGGCGGCGGCGGCCGTGGTTTTGGCAGAGGAGGGAGGTACGATGGCCCCAGTGGTGGCTTCGGCGGAGGTGGTCGTGGCGGGGGTGAGTGCTACAATTGTGGCCGTGTGGGTCATTTAGCGAGGGATTGTTATCGGGGAAACGGCGGTGCCGGTGCGCCTCCCGGCCGTGGCGGGACTCGTAGATACGGAGGTGGTCGGAGTTATGGCGGCGGAGGCGGAGGCGGTGGCGCCGGGGGTTGTTTTAATTGTGGAGATGCAGGGCATTTTGCCAGGGAATGTCCAAATGAAAGCGTATAA

Protein sequence

MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGGGAGGCFNCGDAGHFARECPNESV

Homology

[Close]

BLAST of MC04g1249 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.8e-37
Identity = 114/216 (52.78%), Postives = 134/216 (62.04%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQR 64
           +R+ GTV+WFS QKGFGFI PDD  +DLFVHQ+ IRSEGFR+L +G+ VE+ ++   D R
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 65  AKAVDVT----VIGRSSEYGGGRGGGR-GRGRGGGYGRFGGG------GYGGG----GGG 124
            KAVDVT       +    GGG GGGR G G GGG G +GGG      GYGGG    GGG
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 125 RGFGRGGRYDGPSGGFGGGG-------RGGGECYNCGRVGHLARDCYRGNGGAGAPPGRG 184
            G+G G RY G  GG+GGGG        GG  C+ CG  GH ARDC +  GG        
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGG-------- 186

Query: 185 GTRRYGGGRSYGGGGGGGGAGGCFNCGDAGHFAREC 199
                GGG  +GGGGGGGG GGC+ CG+ GHFAREC
Sbjct: 187 -----GGGGRFGGGGGGGGGGGCYKCGEDGHFAREC 209

[Close]

BLAST of MC04g1249 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 110/198 (55.56%), Postives = 129/198 (65.15%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L   +AVE+ ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGG 124
            KA+DV     S   G    G  G G  GG G FGGG  GG G G G+G GG   G  GG
Sbjct: 69  PKAIDV-----SGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGG---GGYGG 128

Query: 125 FGGGGRGGGECYNCGRVGHLARDCYRGNGG-AGAPPGRGGTRRY-GGGRSYGGG--GGGG 184
            GGGGRGG +CY CG  GH+ARDC  G GG  G   G GG   Y GGG  YGGG  GGGG
Sbjct: 129 RGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGG 188

Query: 185 GAGGCFNCGDAGHFAREC 199
           G G C++CG++GHFAR+C
Sbjct: 189 GGGSCYSCGESGHFARDC 198

[Close]

BLAST of MC04g1249 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 105/197 (53.30%), Postives = 126/197 (63.96%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D  DDLFVHQ+SIRSEGFR+L   ++VE+ ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGGF 125
           KA++V+    +   G   GGG   GRGG    FGGG  GG GGGRG   GG Y G  GG 
Sbjct: 74  KAIEVSGPDGAPVQGNSGGGGSSGGRGG----FGGG--GGRGGGRG---GGSYGGGYGGR 133

Query: 126 GGGGRGGG----ECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGGG 185
           G GGRGGG     C+ CG  GH+AR+C +G GG     G GG  RYG G   GGGGGGGG
Sbjct: 134 GSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYS---GGGGGGRYGSG---GGGGGGGG 193

Query: 186 AGGCFNCGDAGHFAREC 199
              C++CG++GHFAR+C
Sbjct: 194 GLSCYSCGESGHFARDC 195

[Close]

BLAST of MC04g1249 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-21
Identity = 95/217 (43.78%), Postives = 113/217 (52.07%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD  ++LFVHQ+SI S+GFR+L  G++VEY I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVTVIGRSS---EYGGGRGGGRGRGRGGGYGRF--------GGGGYGGGGGGRGFGR 125
           KA++VT  G  S   +    RG G      G  G          GG  +GGGGG R  G 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 126 GGRY-------------DGPSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGR 185
           G  Y                 G  GGGG GG  CY+CG VGHLA+DC  G+GG       
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGG------- 189

Query: 186 GGTRRYGGGRSYGGGGGGGGAGGCFNCGDAGHFAREC 199
               RYG     GGGG G G  GC+ CG  GHFAR+C
Sbjct: 190 ---NRYG-----GGGGRGSGGDGCYMCGGVGHFARDC 211

[Close]

BLAST of MC04g1249 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.5e-19
Identity = 90/200 (45.00%), Postives = 108/200 (54.00%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD + +LFVHQ+SI SEG+R+L  G AVE++I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVTVIGRSS--EYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSG 125
           KAV+VT  G  S  +    RG G  RG GGG G +  G  G      G G GG      G
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDCGIGGGG------G 129

Query: 126 GFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGGGAG 185
           G     RGG  CYNCG  GH ARDC      AG    RG T+              GG  
Sbjct: 130 GGERRSRGGEGCYNCGDTGHFARDC----TSAGNGDQRGATK--------------GGND 184

Query: 186 GCFNCGDAGHFARECPNESV 204
           GC+ CGD GH AR+C  +SV
Sbjct: 190 GCYTCGDVGHVARDCTQKSV 184

[Close]

BLAST of MC04g1249 vs. NCBI nr
Match: XP_022141389.1 (glycine-rich protein 2-like [Momordica charantia])

HSP 1 Score: 372 bits (955), Expect = 2.19e-129
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEV RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD
Sbjct: 1   MAEVXRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120
           EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG
Sbjct: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120

Query: 121 PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG 180
           PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG
Sbjct: 121 PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG 180

Query: 181 GAGGCFNCGDAGHFARECPNESV 203
           GAGGCFNCGDAGHFARECPNESV
Sbjct: 181 GAGGCFNCGDAGHFARECPNESV 203

[Close]

BLAST of MC04g1249 vs. NCBI nr
Match: XP_022938383.1 (cold shock protein 2-like [Cucurbita moschata])

HSP 1 Score: 297 bits (761), Expect = 6.66e-100
Identity = 177/206 (85.92%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSI+SEGFRTLFDGQAVE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGG-GGYGGGGGGRGFGRGG-RY 120
           EDQRAKAVDVTV GRSS YGGGRGG RGRG  GGYGRFGG GGYGG    RGFGRGG RY
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRG--GGYGRFGGEGGYGG----RGFGRGGGRY 120

Query: 121 DGPSGGFGGGG--RGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGG 180
           DGPSGGFGGGG  RGGGECYNCGR+GHLARDCYRGNGGA  PP RGG R YGGGR YGGG
Sbjct: 121 DGPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPSRGGGRGYGGGRGYGGG 180

Query: 181 GGGGGAGGCFNCGDAGHFARECPNES 202
           GGGGG G C+NCGD GHFAR+C NES
Sbjct: 181 GGGGGRG-CYNCGDTGHFARDCQNES 197

[Close]

BLAST of MC04g1249 vs. NCBI nr
Match: XP_023549669.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296 bits (758), Expect = 1.91e-99
Identity = 178/206 (86.41%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSI+SEGFRTLFDGQAVE+SIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFSIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGG-GGYGGGGGGRGFGRGG-RY 120
           EDQRAKAVDVTV GRSS YGGGRGG RGRG  GGYGRFGG GGYGGGG  RGFGRGG RY
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRG--GGYGRFGGEGGYGGGG--RGFGRGGGRY 120

Query: 121 DGPSGGFGGGG--RGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGG 180
           DGPSGGFGGGG  RGGGECYNCGR+GHLARDCYRGNGGA  PP RGG R YGGGR YGGG
Sbjct: 121 DGPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPSRGGGRGYGGGRGYGGG 180

Query: 181 GGGGGAGGCFNCGDAGHFARECPNES 202
           GGG G   C+NCGD GHFAR+C NES
Sbjct: 181 GGGRG---CYNCGDTGHFARDCQNES 197

[Close]

BLAST of MC04g1249 vs. NCBI nr
Match: XP_022993723.1 (cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016506.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293 bits (749), Expect = 4.18e-98
Identity = 175/206 (84.95%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSI+SEGFRTLFDGQAVE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGG-GGYGGGGGGRGFGRGG-RY 120
           EDQRAKAVDVTV GRSS YGGGRGG RGRG  GGYGRFGG GGYGG    RGFGRGG RY
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRG--GGYGRFGGEGGYGG----RGFGRGGGRY 120

Query: 121 DGPSGGFGGGG--RGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGG 180
           DGPSGGFGGGG  RGGGECYNCGR+GHLARDCYRGNGGA  PP RGG R YGGGR YGGG
Sbjct: 121 DGPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPSRGGGRGYGGGRGYGGG 180

Query: 181 GGGGGAGGCFNCGDAGHFARECPNES 202
           GGG G   C+NCGD GHFAR+C NES
Sbjct: 181 GGGRG---CYNCGDTGHFARDCQNES 195

[Close]

BLAST of MC04g1249 vs. NCBI nr
Match: XP_038906549.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 281 bits (719), Expect = 1.10e-93
Identity = 165/204 (80.88%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA++DLFVHQTSIRSEGFRTLFDGQAVE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASEDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120
           EDQR+KAVDVTVIGRS+ YGGGRGGGRGRG  G YGRFG       GGGRGFGRGGRY+ 
Sbjct: 61  EDQRSKAVDVTVIGRSTGYGGGRGGGRGRG--GAYGRFG-------GGGRGFGRGGRYED 120

Query: 121 PSGGFGG--GGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGG 180
            SGGFGG  GGRGGGECYNCGR+GHLARDCYRGNGGA  PPGRG    YGGGR YGGG G
Sbjct: 121 SSGGFGGRGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPGRG----YGGGRGYGGGAG 180

Query: 181 GGGAGGCFNCGDAGHFARECPNES 202
           GG    C+NCGD GHFAR+C NES
Sbjct: 181 GG----CYNCGDTGHFARDCQNES 185

[Close]

BLAST of MC04g1249 vs. ExPASy TrEMBL
Match: A0A6J1CIH7 (glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 SV=1)

HSP 1 Score: 372 bits (955), Expect = 1.06e-129
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEV RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD
Sbjct: 1   MAEVXRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120
           EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG
Sbjct: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120

Query: 121 PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG 180
           PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG
Sbjct: 121 PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG 180

Query: 181 GAGGCFNCGDAGHFARECPNESV 203
           GAGGCFNCGDAGHFARECPNESV
Sbjct: 181 GAGGCFNCGDAGHFARECPNESV 203

[Close]

BLAST of MC04g1249 vs. ExPASy TrEMBL
Match: A0A6J1FIQ9 (cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=1)

HSP 1 Score: 297 bits (761), Expect = 3.23e-100
Identity = 177/206 (85.92%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSI+SEGFRTLFDGQAVE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGG-GGYGGGGGGRGFGRGG-RY 120
           EDQRAKAVDVTV GRSS YGGGRGG RGRG  GGYGRFGG GGYGG    RGFGRGG RY
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRG--GGYGRFGGEGGYGG----RGFGRGGGRY 120

Query: 121 DGPSGGFGGGG--RGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGG 180
           DGPSGGFGGGG  RGGGECYNCGR+GHLARDCYRGNGGA  PP RGG R YGGGR YGGG
Sbjct: 121 DGPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPSRGGGRGYGGGRGYGGG 180

Query: 181 GGGGGAGGCFNCGDAGHFARECPNES 202
           GGGGG G C+NCGD GHFAR+C NES
Sbjct: 181 GGGGGRG-CYNCGDTGHFARDCQNES 197

[Close]

BLAST of MC04g1249 vs. ExPASy TrEMBL
Match: A0A6J1K351 (cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1)

HSP 1 Score: 293 bits (749), Expect = 2.02e-98
Identity = 175/206 (84.95%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSI+SEGFRTLFDGQAVE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGG-GGYGGGGGGRGFGRGG-RY 120
           EDQRAKAVDVTV GRSS YGGGRGG RGRG  GGYGRFGG GGYGG    RGFGRGG RY
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRG--GGYGRFGGEGGYGG----RGFGRGGGRY 120

Query: 121 DGPSGGFGGGG--RGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGG 180
           DGPSGGFGGGG  RGGGECYNCGR+GHLARDCYRGNGGA  PP RGG R YGGGR YGGG
Sbjct: 121 DGPSGGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPSRGGGRGYGGGRGYGGG 180

Query: 181 GGGGGAGGCFNCGDAGHFARECPNES 202
           GGG G   C+NCGD GHFAR+C NES
Sbjct: 181 GGGRG---CYNCGDTGHFARDCQNES 195

[Close]

BLAST of MC04g1249 vs. ExPASy TrEMBL
Match: A0A1S3CPN9 (cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1)

HSP 1 Score: 274 bits (701), Expect = 2.54e-91
Identity = 162/202 (80.20%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA+DDLFVHQTSIRSEGFRTLFDGQ VE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120
           +DQRAKAVDVTVI RS+ YGGGRGGGRGRG  G YGRFG       GGGRGFGRG  YDG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRG--GSYGRFG-------GGGRGFGRGRWYDG 120

Query: 121 PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG 180
           PS   GGGGRGGGECYNCGR+GHLARDCYRGNGGA  PPGR    RY GGR YGGGGGG 
Sbjct: 121 PS---GGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPGR----RYEGGRGYGGGGGGR 180

Query: 181 GAGGCFNCGDAGHFARECPNES 202
           G   C+NCGD GHFAR+C NES
Sbjct: 181 G---CYNCGDTGHFARDCQNES 181

[Close]

BLAST of MC04g1249 vs. ExPASy TrEMBL
Match: A0A5A7TX13 (Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00260 PE=4 SV=1)

HSP 1 Score: 274 bits (701), Expect = 2.54e-91
Identity = 162/202 (80.20%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA+DDLFVHQTSIRSEGFRTLFDGQ VE++IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120
           +DQRAKAVDVTVI RS+ YGGGRGGGRGRG  G YGRFG       GGGRGFGRG  YDG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRG--GSYGRFG-------GGGRGFGRGRWYDG 120

Query: 121 PSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGG 180
           PS   GGGGRGGGECYNCGR+GHLARDCYRGNGGA  PPGR    RY GGR YGGGGGG 
Sbjct: 121 PS---GGGGRGGGECYNCGRMGHLARDCYRGNGGA--PPGR----RYEGGRGYGGGGGGR 180

Query: 181 GAGGCFNCGDAGHFARECPNES 202
           G   C+NCGD GHFAR+C NES
Sbjct: 181 G---CYNCGDTGHFARDCQNES 181

[Close]

BLAST of MC04g1249 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-35
Identity = 110/198 (55.56%), Postives = 129/198 (65.15%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L   +AVE+ ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGG 124
            KA+DV     S   G    G  G G  GG G FGGG  GG G G G+G GG   G  GG
Sbjct: 69  PKAIDV-----SGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGG---GGYGG 128

Query: 125 FGGGGRGGGECYNCGRVGHLARDCYRGNGG-AGAPPGRGGTRRY-GGGRSYGGG--GGGG 184
            GGGGRGG +CY CG  GH+ARDC  G GG  G   G GG   Y GGG  YGGG  GGGG
Sbjct: 129 RGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGG 188

Query: 185 GAGGCFNCGDAGHFAREC 199
           G G C++CG++GHFAR+C
Sbjct: 189 GGGSCYSCGESGHFARDC 198

[Close]

BLAST of MC04g1249 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-33
Identity = 105/197 (53.30%), Postives = 126/197 (63.96%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D  DDLFVHQ+SIRSEGFR+L   ++VE+ ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGGF 125
           KA++V+    +   G   GGG   GRGG    FGGG  GG GGGRG   GG Y G  GG 
Sbjct: 74  KAIEVSGPDGAPVQGNSGGGGSSGGRGG----FGGG--GGRGGGRG---GGSYGGGYGGR 133

Query: 126 GGGGRGGG----ECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGGG 185
           G GGRGGG     C+ CG  GH+AR+C +G GG     G GG  RYG G   GGGGGGGG
Sbjct: 134 GSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYS---GGGGGGRYGSG---GGGGGGGG 193

Query: 186 AGGCFNCGDAGHFAREC 199
              C++CG++GHFAR+C
Sbjct: 194 GLSCYSCGESGHFARDC 195

[Close]

BLAST of MC04g1249 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 95/217 (43.78%), Postives = 113/217 (52.07%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD  ++LFVHQ+SI S+GFR+L  G++VEY I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVTVIGRSS---EYGGGRGGGRGRGRGGGYGRF--------GGGGYGGGGGGRGFGR 125
           KA++VT  G  S   +    RG G      G  G          GG  +GGGGG R  G 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 126 GGRY-------------DGPSGGFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGR 185
           G  Y                 G  GGGG GG  CY+CG VGHLA+DC  G+GG       
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGG------- 189

Query: 186 GGTRRYGGGRSYGGGGGGGGAGGCFNCGDAGHFAREC 199
               RYG     GGGG G G  GC+ CG  GHFAR+C
Sbjct: 190 ---NRYG-----GGGGRGSGGDGCYMCGGVGHFARDC 211

[Close]

BLAST of MC04g1249 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-20
Identity = 90/200 (45.00%), Postives = 108/200 (54.00%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD + +LFVHQ+SI SEG+R+L  G AVE++I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVTVIGRSS--EYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSG 125
           KAV+VT  G  S  +    RG G  RG GGG G +  G  G      G G GG      G
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDCGIGGGG------G 129

Query: 126 GFGGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGGGGGAG 185
           G     RGG  CYNCG  GH ARDC      AG    RG T+              GG  
Sbjct: 130 GGERRSRGGEGCYNCGDTGHFARDC----TSAGNGDQRGATK--------------GGND 184

Query: 186 GCFNCGDAGHFARECPNESV 204
           GC+ CGD GH AR+C  +SV
Sbjct: 190 GCYTCGDVGHVARDCTQKSV 184

The following BLAST results are available for this feature:

BLAST of MC04g1249 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	7.8e-37	52.78	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q41188	1.6e-34	55.56	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	7.5e-32	53.30	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q94C69	6.0e-21	43.78	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	9.5e-19	45.00	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of MC04g1249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141389.1	2.19e-129	99.51	glycine-rich protein 2-like [Momordica charantia]	[more]
XP_022938383.1	6.66e-100	85.92	cold shock protein 2-like [Cucurbita moschata]	[more]
XP_023549669.1	1.91e-99	86.41	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993723.1	4.18e-98	84.95	cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1,...	[more]
XP_038906549.1	1.10e-93	80.88	glycine-rich protein 2-like [Benincasa hispida]	[more]

BLAST of MC04g1249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIH7	1.06e-129	99.51	glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 ...	[more]
A0A6J1FIQ9	3.23e-100	85.92	cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=...	[more]
A0A6J1K351	2.02e-98	84.95	cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1	[more]
A0A1S3CPN9	2.54e-91	80.20	cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1	[more]
A0A5A7TX13	2.54e-91	80.20	Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MC04g1249 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38680.1	1.2e-35	55.56	glycine rich protein 2	[more]
AT2G21060.1	5.3e-33	53.30	glycine-rich protein 2B	[more]
AT2G17870.1	4.2e-22	43.78	cold shock domain protein 3	[more]
AT4G36020.1	6.8e-20	45.00	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 45..63 score: 30.63 coord: 9..24 score: 60.88 coord: 30..39 score: 58.54
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 8..72 e-value: 6.5E-22 score: 77.2
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 6..72 score: 28.696865
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 9..72 e-value: 4.29838E-21 score: 80.7006
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 184..200 e-value: 1.1E-5 score: 34.9 coord: 134..150 e-value: 3.4E-4 score: 29.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 134..148 e-value: 8.5E-7 score: 28.8 coord: 184..200 e-value: 3.4E-7 score: 30.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 185..200 score: 11.169136
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 135..148 score: 10.987825
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 8..73 e-value: 1.4E-21 score: 87.7
None	No IPR available	GENE3D	2.40.50.140		coord: 1..71 e-value: 2.4E-23 score: 83.8
None	No IPR available	GENE3D	4.10.60.10		coord: 181..202 e-value: 1.4E-6 score: 29.8 coord: 127..166 e-value: 2.5E-6 score: 29.0
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..201
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 20..39
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..73
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 168..200
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 128..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1249.1	MC04g1249.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding