MC04g1247 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1247
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	MC04: 20539171 .. 20539290 (+)
RNA-Seq Expression	MC04g1247
Synteny	MC04g1247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGATTGGCCCTTCAGTGCAAAAGCAAAAAAGAGCTTGAGTGCAAGACCCTCCTCTCAAGCAAGGAAAAAAGTCAACCTTAGTGATCCGACGATACCGAGTGGAAAGGGTCTCCAACAA

mRNA sequence

GGAGATTGGCCCTTCAGTGCAAAAGCAAAAAAGAGCTTGAGTGCAAGACCCTCCTCTCAAGCAAGGAAAAAAGTCAACCTTAGTGATCCGACGATACCGAGTGGAAAGGGTCTCCAACAA

Coding sequence (CDS)

GGAGATTGGCCCTTCAGTGCAAAAGCAAAAAAGAGCTTGAGTGCAAGACCCTCCTCTCAAGCAAGGAAAAAAGTCAACCTTAGTGATCCGACGATACCGAGTGGAAAGGGTCTCCAACAA

Protein sequence

GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ

Homology

[Close]

BLAST of MC04g1247 vs. NCBI nr
Match: RZC44126.1 (hypothetical protein C5167_037083 [Papaver somniferum])

HSP 1 Score: 52.8 bits (125), Expect = 1.53e-07
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
          GDWP SAKA+ SL+ARP+ +A  KV LSDPT+PSG+ + Q
Sbjct: 29 GDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQ 68

[Close]

BLAST of MC04g1247 vs. NCBI nr
Match: KAD7116982.1 (hypothetical protein E3N88_04250 [Mikania micrantha])

HSP 1 Score: 53.1 bits (126), Expect = 2.03e-07
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1  GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
          GDWP SAKA+ SL+ARP+ +A  KV+LSDPT+PSG+ + Q
Sbjct: 57 GDWPSSAKAEGSLTARPTRRAGTKVSLSDPTVPSGRAVAQ 96

[Close]

BLAST of MC04g1247 vs. NCBI nr
Match: PHT97073.1 (hypothetical protein BC332_33994 [Capsicum chinense])

HSP 1 Score: 52.8 bits (125), Expect = 3.20e-07
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 2   DWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
           DWP SAKA+ SL+ARP+ QA  KV+LSDPT+PSG+ + Q
Sbjct: 63  DWPSSAKAEGSLTARPTRQAGTKVDLSDPTVPSGRAIAQ 101

[Close]

BLAST of MC04g1247 vs. NCBI nr
Match: QCE15173.1 (hypothetical protein DEO72_LG11g2182 [Vigna unguiculata])

HSP 1 Score: 52.8 bits (125), Expect = 6.90e-07
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1   GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
           GDWP SAKA+ SL+ARP+ +A  KV LSDPT+PSG+ + Q
Sbjct: 104 GDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQ 143

[Close]

BLAST of MC04g1247 vs. NCBI nr
Match: VDD65484.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 52.8 bits (125), Expect = 9.58e-07
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1   GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
           GDWP SAKA+ SL+ARP+ +A  KV LSDPT+PSG+ + Q
Sbjct: 127 GDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQ 166

[Close]

BLAST of MC04g1247 vs. ExPASy TrEMBL
Match: A0A4Y7I7X0 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_037083 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.43e-08
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
          GDWP SAKA+ SL+ARP+ +A  KV LSDPT+PSG+ + Q
Sbjct: 29 GDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQ 68

[Close]

BLAST of MC04g1247 vs. ExPASy TrEMBL
Match: A0A5N6PUG6 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_04250 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.84e-08
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1  GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
          GDWP SAKA+ SL+ARP+ +A  KV+LSDPT+PSG+ + Q
Sbjct: 57 GDWPSSAKAEGSLTARPTRRAGTKVSLSDPTVPSGRAVAQ 96

[Close]

BLAST of MC04g1247 vs. ExPASy TrEMBL
Match: A0A2G3ASA3 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_33994 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.55e-07
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 2   DWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
           DWP SAKA+ SL+ARP+ QA  KV+LSDPT+PSG+ + Q
Sbjct: 63  DWPSSAKAEGSLTARPTRQAGTKVDLSDPTVPSGRAIAQ 101

[Close]

BLAST of MC04g1247 vs. ExPASy TrEMBL
Match: A0A4D6NMW7 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.34e-07
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1   GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
           GDWP SAKA+ SL+ARP+ +A  KV LSDPT+PSG+ + Q
Sbjct: 104 GDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQ 143

[Close]

BLAST of MC04g1247 vs. ExPASy TrEMBL
Match: A0A3P6H5R4 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC35T60712H PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.64e-07
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1   GDWPFSAKAKKSLSARPSSQARKKVNLSDPTIPSGKGLQQ 40
           GDWP SAKA+ SL+ARP+ +A  KV LSDPT+PSG+ + Q
Sbjct: 127 GDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQ 166

The following BLAST results are available for this feature:

BLAST of MC04g1247 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1247 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC44126.1	1.53e-07	62.50	hypothetical protein C5167_037083 [Papaver somniferum]	[more]
KAD7116982.1	2.03e-07	62.50	hypothetical protein E3N88_04250 [Mikania micrantha]	[more]
PHT97073.1	3.20e-07	64.10	hypothetical protein BC332_33994 [Capsicum chinense]	[more]
QCE15173.1	6.90e-07	62.50	hypothetical protein DEO72_LG11g2182 [Vigna unguiculata]	[more]
VDD65484.1	9.58e-07	62.50	unnamed protein product [Brassica oleracea]	[more]

BLAST of MC04g1247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7I7X0	7.43e-08	62.50	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_037083 PE=4 SV=1	[more]
A0A5N6PUG6	9.84e-08	62.50	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_04250 PE=4 SV=1	[more]
A0A2G3ASA3	1.55e-07	64.10	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_33994 PE=4 SV=1	[more]
A0A4D6NMW7	3.34e-07	62.50	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=...	[more]
A0A3P6H5R4	4.64e-07	62.50	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC35T60712H PE=4 SV=1	[more]

BLAST of MC04g1247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1247.1	MC04g1247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity