MC04g1112 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1112
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein SENSITIVITY TO RED LIGHT REDUCED 1
Location	MC04: 19182152 .. 19182979 (-)
RNA-Seq Expression	MC04g1112
Synteny	MC04g1112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGTCGGCAGAAACTATCACCATTCCGGATCAGTCAAATAATAGCGACTGGACTGTTGTTTTGCCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTCAGAAATCAAGAGGAGCAGCGGGCGTGGTCTCCCACTGATCAGGCCAGCGATACAGTCAGAGAATCGAAATTGTTGCAGAAGATGCAAATCTGTATTGAGAAGGTTCAGAGCTCCCAATTTTATCAAACCCTTGTTGATGATCTCGGAACGATGCCAGCATTGGAATTCTTGAATAGGGTTTTGGCCTCGGAGCCAAATATGGGGATGGTTATCTACGGCATAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCAATATTGATGAAAAGGAAATTTGGTTGGATTGGAAGTTTAGAGGTGTTCGATCCAATTCTTTCTGCGACCGAGTGTCGGGTAATGGAGTCCTTTGGTTGTTCCGTTCTATCAGAAAATGAGCAAGGGCGGCGATGTGCGCAGAAGCCAACACTGTTTTTCATGCCCCACTGCGAGGTAAATTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGACCTATGAGGAGTTCGTATCAGAATTCAAAGGCTCACAACTTGTTGATTCGGCGAAGTACGTCTTGGCCACTAGAAAATTCACAAGCGAGATCAAGATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATAGTTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCAACAGAGCTGCAATTCACAGAA

mRNA sequence

ATGGCTGCGTCGGCAGAAACTATCACCATTCCGGATCAGTCAAATAATAGCGACTGGACTGTTGTTTTGCCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTCAGAAATCAAGAGGAGCAGCGGGCGTGGTCTCCCACTGATCAGGCCAGCGATACAGTCAGAGAATCGAAATTGTTGCAGAAGATGCAAATCTGTATTGAGAAGGTTCAGAGCTCCCAATTTTATCAAACCCTTGTTGATGATCTCGGAACGATGCCAGCATTGGAATTCTTGAATAGGGTTTTGGCCTCGGAGCCAAATATGGGGATGGTTATCTACGGCATAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCAATATTGATGAAAAGGAAATTTGGTTGGATTGGAAGTTTAGAGGTGTTCGATCCAATTCTTTCTGCGACCGAGTGTCGGGTAATGGAGTCCTTTGGTTGTTCCGTTCTATCAGAAAATGAGCAAGGGCGGCGATGTGCGCAGAAGCCAACACTGTTTTTCATGCCCCACTGCGAGGTAAATTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGACCTATGAGGAGTTCGTATCAGAATTCAAAGGCTCACAACTTGTTGATTCGGCGAAGTACGTCTTGGCCACTAGAAAATTCACAAGCGAGATCAAGATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATAGTTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCAACAGAGCTGCAATTCACAGAA

Coding sequence (CDS)

ATGGCTGCGTCGGCAGAAACTATCACCATTCCGGATCAGTCAAATAATAGCGACTGGACTGTTGTTTTGCCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTCAGAAATCAAGAGGAGCAGCGGGCGTGGTCTCCCACTGATCAGGCCAGCGATACAGTCAGAGAATCGAAATTGTTGCAGAAGATGCAAATCTGTATTGAGAAGGTTCAGAGCTCCCAATTTTATCAAACCCTTGTTGATGATCTCGGAACGATGCCAGCATTGGAATTCTTGAATAGGGTTTTGGCCTCGGAGCCAAATATGGGGATGGTTATCTACGGCATAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCAATATTGATGAAAAGGAAATTTGGTTGGATTGGAAGTTTAGAGGTGTTCGATCCAATTCTTTCTGCGACCGAGTGTCGGGTAATGGAGTCCTTTGGTTGTTCCGTTCTATCAGAAAATGAGCAAGGGCGGCGATGTGCGCAGAAGCCAACACTGTTTTTCATGCCCCACTGCGAGGTAAATTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGACCTATGAGGAGTTCGTATCAGAATTCAAAGGCTCACAACTTGTTGATTCGGCGAAGTACGTCTTGGCCACTAGAAAATTCACAAGCGAGATCAAGATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATAGTTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCAACAGAGCTGCAATTCACAGAA

Protein sequence

MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE

Homology

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BLAST of MC04g1112 vs. ExPASy Swiss-Prot
Match: Q8GWZ6 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SRR1 PE=2 SV=2)

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-72
Identity = 139/268 (51.87%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 9   TIPDQSNNSDWTVVLP---RRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ 68
           T+ + S++ +W VVLP   R+GR+RK  PK + +EE++ W   D   D  R+++L QKM+
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSL 128
           I ++K++SS FY   ++ L +      +  VL SE  + MV+YGIGSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILMKRKFGWIG-SLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCE 188
           AILMKR+F W+G ++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPTLFFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 VNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIK 248
            NLY+NLLQ NW ++ L+ + LFGNSF+ YEE VS    ++++ + K ++A ++ TSE  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTLSDDYFGAFHSSSWQFFSPVSPTEL 273
           I+T SDDYF AFH SSW FFS    +EL
Sbjct: 244 IETESDDYFAAFHDSSWHFFSSGIDSEL 269

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BLAST of MC04g1112 vs. ExPASy Swiss-Prot
Match: Q8K2M3 (SRR1-like protein OS=Mus musculus OX=10090 GN=Srrd PE=2 SV=4)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 77/218 (35.32%), Postives = 112/218 (51.38%), Query Frame = 0


Query: 19  WTVVLPRRGRQRKNLPKLRNQEEQRAWSPTD---------QASDTVRE----SKLLQKMQ 78
           W+ V PRR R+R    + R  E  RA    D         +A + +R     S  L+ + 
Sbjct: 9   WSAVAPRR-RKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  ICIEKVQSSQFYQTLVDDLGTMPALEFL-----NRVLASEPNMGMVIYGIGSIENYENPR 138
            C+ K Q  Q  Q L + LG +     L       + +S  ++  V YG+G+  +    R
Sbjct: 69  ECLRK-QLEQL-QPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTAR 128

Query: 139 LQLSLAILMKRKFGWIGS-LEVFDPILSATECRVMESFGCSVLSENEQGRRCAQ-KPTLF 198
           +QL+  +L   K     S   V+DP+ S TE  V+ S G +VLSENE+G+R  Q +PT+F
Sbjct: 129 IQLAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVF 188

Query: 199 FMPHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEE 217
           +MPHC   LYNNLL  NW+ + L+ V++ GNSF   EE
Sbjct: 189 YMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

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BLAST of MC04g1112 vs. ExPASy Swiss-Prot
Match: Q9UH36 (SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.4e-18
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 0


Query: 106 VIYGIGSIENYENPRLQLSLAILMKRKFGWIGS-LEVFDPILSATECRVMESFGCSVLSE 165
           V YGIG+       R QL+  +L+  K     S   V+DP+ S  E  V+ + G +VLSE
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSE 201

Query: 166 NEQGRRCAQ-KPTLFFMPHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKG 225
           NE+G+R  + +PT+F+M HC   LYNNLL  NW+V+ L+ +V+ GNSF+  EE       
Sbjct: 202 NEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEE---RLLA 261

Query: 226 SQLVDSAKYVLATRKFTSEIKIKTLSDDYFGAFHSSSWQFFSPVSPTE 272
             L  +  Y+    K   E++    S  Y   F+ +S  +F PV   E
Sbjct: 262 RILQKNYPYIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF-PVQKLE 304

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BLAST of MC04g1112 vs. ExPASy Swiss-Prot
Match: Q9VEB5 (SRR1-like protein OS=Drosophila melanogaster OX=7227 GN=CG7988 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-09
Identity = 54/202 (26.73%), Postives = 91/202 (45.05%), Query Frame = 0


Query: 14  SNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ-ICIEKVQ 73
           ++  D+ VV  ++   RK    LR ++  ++ S        V   K   +++ +C E  Q
Sbjct: 3   NSGEDFQVVTRKKWMARK---CLRRRDRHKSESDYLIDCPDVNVEKFQPRLENLCTEMCQ 62

Query: 74  SSQFYQTLVDDLGTMPALEFLNRVLAS--EPNMGMVIYGIGSIENYENPRLQLSLAILMK 133
           S  F          + A+E L + L    +P   +V  G+G      +   Q +  I + 
Sbjct: 63  SDYF----------LVAMEALQQQLEGIRKPLERIVCLGLGPFSRTYHALHQAAFVIGLH 122

Query: 134 RKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCEVNLYNN 193
           R    I     FDP+   +E  ++  F   ++S++  G+  A  PTL+++PHC   L +N
Sbjct: 123 RHHK-IREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEATVPTLYYLPHCPYALMHN 182

Query: 194 LLQENWTVELLNHVVLFGNSFE 213
           +L  NW  E L +V L  NSFE
Sbjct: 183 ILWSNWKRETLPNVFLISNSFE 190

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BLAST of MC04g1112 vs. NCBI nr
Match: XP_022141416.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1 [Momordica charantia])

HSP 1 Score: 552 bits (1422), Expect = 3.97e-198
Identity = 275/276 (99.64%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASAETITIPDQSNNSDWTVVLPRRG+QRKNLPKLRNQEEQRAWSPTDQASDTVRESKL
Sbjct: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR
Sbjct: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM
Sbjct: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT
Sbjct: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
           SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE
Sbjct: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276

[Close]

BLAST of MC04g1112 vs. NCBI nr
Match: KAG6579107.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 480 bits (1235), Expect = 1.26e-169
Identity = 232/276 (84.06%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRGRQRK  PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LNRVLASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVM SFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMASFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of MC04g1112 vs. NCBI nr
Match: XP_023550156.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550157.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550158.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550159.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 479 bits (1233), Expect = 2.55e-169
Identity = 231/276 (83.70%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRGRQRK  PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQF++TL+D+LGT P LE LNR LASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFFRTLIDELGTTPVLESLNRALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of MC04g1112 vs. NCBI nr
Match: XP_022939448.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939449.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939450.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939451.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939452.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata])

HSP 1 Score: 478 bits (1231), Expect = 5.14e-169
Identity = 231/276 (83.70%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRGRQRK  PKLRN+E+QR WSPTDQA+D +RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LNRVLASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LY+NLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of MC04g1112 vs. NCBI nr
Match: XP_023553043.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023553053.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471 bits (1212), Expect = 4.03e-166
Identity = 228/276 (82.61%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           M ASA+T+ IPDQSNN DWTVVLPRRGRQRKNLPKLR QE+QR WSP+DQA+DT+RESKL
Sbjct: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           L KM+ICIEKV+SSQFY+TLVD+L TMP LE LNRVLASE  MGMVIYG+GSIENYENPR
Sbjct: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIG LEVFDPILSA ECRV+ESFGCS+LS NEQGRRCAQKPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWT ELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKF+
Sbjct: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKTLSD+YFGAFH SSW FFS V PTELQFT+
Sbjct: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTD 276

[Close]

BLAST of MC04g1112 vs. ExPASy TrEMBL
Match: A0A6J1CJ43 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Momordica charantia OX=3673 GN=LOC111011826 PE=3 SV=1)

HSP 1 Score: 552 bits (1422), Expect = 1.92e-198
Identity = 275/276 (99.64%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASAETITIPDQSNNSDWTVVLPRRG+QRKNLPKLRNQEEQRAWSPTDQASDTVRESKL
Sbjct: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR
Sbjct: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM
Sbjct: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT
Sbjct: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
           SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE
Sbjct: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276

[Close]

BLAST of MC04g1112 vs. ExPASy TrEMBL
Match: A0A6J1FGU7 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC111445349 PE=3 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 2.49e-169
Identity = 231/276 (83.70%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRGRQRK  PKLRN+E+QR WSPTDQA+D +RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LNRVLASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LY+NLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of MC04g1112 vs. ExPASy TrEMBL
Match: A0A6J1JWJ0 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111488981 PE=3 SV=1)

HSP 1 Score: 471 bits (1211), Expect = 2.77e-166
Identity = 227/276 (82.25%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+ + + DQSNN DWTVVLPRRGRQRK  PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKNLAVLDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LN+ LASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNKALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCS+LS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSILSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWTVELLNHVVLFGNSFE Y +FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAGLYNNLLQENWTVELLNHVVLFGNSFEIYGQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of MC04g1112 vs. ExPASy TrEMBL
Match: A0A5A7VEC7 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00470 PE=3 SV=1)

HSP 1 Score: 456 bits (1172), Expect = 2.42e-160
Identity = 216/276 (78.26%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ IPDQSNN DWTVVLPRRG+QRKN PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM++CI+K++SSQFY+TLV++L T+P LE LNRVL SE  MG+VIYG+GSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WI SLEVFDPILSATECR+MESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENW V+LLNH++LFGNSFE YE+FVSEFK S +VDS+ ++LA+RKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKT+SDDYFGAFH SSW FFSPVSP EL+F +
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFID 276

[Close]

BLAST of MC04g1112 vs. ExPASy TrEMBL
Match: A0A1S3CQQ4 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo OX=3656 GN=LOC103503243 PE=3 SV=1)

HSP 1 Score: 456 bits (1172), Expect = 2.42e-160
Identity = 216/276 (78.26%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ IPDQSNN DWTVVLPRRG+QRKN PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM++CI+K++SSQFY+TLV++L T+P LE LNRVL SE  MG+VIYG+GSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WI SLEVFDPILSATECR+MESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENW V+LLNH++LFGNSFE YE+FVSEFK S +VDS+ ++LA+RKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 276
            EIKIKT+SDDYFGAFH SSW FFSPVSP EL+F +
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFID 276

[Close]

BLAST of MC04g1112 vs. TAIR 10
Match: AT5G59560.1 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-73
Identity = 139/268 (51.87%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 9   TIPDQSNNSDWTVVLP---RRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ 68
           T+ + S++ +W VVLP   R+GR+RK  PK + +EE++ W   D   D  R+++L QKM+
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSL 128
           I ++K++SS FY   ++ L +      +  VL SE  + MV+YGIGSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILMKRKFGWIG-SLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCE 188
           AILMKR+F W+G ++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPTLFFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 VNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIK 248
            NLY+NLLQ NW ++ L+ + LFGNSF+ YEE VS    ++++ + K ++A ++ TSE  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTLSDDYFGAFHSSSWQFFSPVSPTEL 273
           I+T SDDYF AFH SSW FFS    +EL
Sbjct: 244 IETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of MC04g1112 vs. TAIR 10
Match: AT5G59560.2 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-73
Identity = 139/268 (51.87%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 9   TIPDQSNNSDWTVVLP---RRGRQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ 68
           T+ + S++ +W VVLP   R+GR+RK  PK + +EE++ W   D   D  R+++L QKM+
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSL 128
           I ++K++SS FY   ++ L +      +  VL SE  + MV+YGIGSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILMKRKFGWIG-SLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCE 188
           AILMKR+F W+G ++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPTLFFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 VNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIK 248
            NLY+NLLQ NW ++ L+ + LFGNSF+ YEE VS    ++++ + K ++A ++ TSE  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTLSDDYFGAFHSSSWQFFSPVSPTEL 273
           I+T SDDYF AFH SSW FFS    +EL
Sbjct: 244 IETESDDYFAAFHDSSWHFFSSGIDSEL 269

The following BLAST results are available for this feature:

BLAST of MC04g1112 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWZ6	2.0e-72	51.87	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q8K2M3	1.1e-20	35.32	SRR1-like protein OS=Mus musculus OX=10090 GN=Srrd PE=2 SV=4	[more]
Q9UH36	8.4e-18	36.31	SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=2 SV=1	[more]
Q9VEB5	7.1e-09	26.73	SRR1-like protein OS=Drosophila melanogaster OX=7227 GN=CG7988 PE=1 SV=1	[more]

BLAST of MC04g1112 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141416.1	3.97e-198	99.64	protein SENSITIVITY TO RED LIGHT REDUCED 1 [Momordica charantia]	[more]
KAG6579107.1	1.26e-169	84.06	Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subs...	[more]
XP_023550156.1	2.55e-169	83.70	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022939448.1	5.14e-169	83.70	protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939449.1 ...	[more]
XP_023553043.1	4.03e-166	82.61	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of MC04g1112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJ43	1.92e-198	99.64	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1FGU7	2.49e-169	83.70	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JWJ0	2.77e-166	82.25	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7VEC7	2.42e-160	78.26	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CQQ4	2.42e-160	78.26	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo OX=3656 GN=LOC1035032...	[more]

BLAST of MC04g1112 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59560.1	1.4e-73	51.87	sensitivity to red light reduced protein (SRR1)	[more]
AT5G59560.2	1.4e-73	51.87	sensitivity to red light reduced protein (SRR1)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	SRR1-like domain	PFAM	PF07985	SRR1	coord: 105..157 e-value: 9.3E-11 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 14..266
IPR040044	SRR1-like protein	PANTHER	PTHR28626	SRR1-LIKE PROTEIN	coord: 14..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1112.1	MC04g1112.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus