MC04g1067 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1067
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC04: 18730790 .. 18731084 (+)
RNA-Seq Expression	MC04g1067
Synteny	MC04g1067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCCATTTGCATCAAAATGCTGAAGCCTGCACCAGCCAAGAGTCCCCAGAATCCTGGGAAGATAATTCTGAGTCTTACTTTTCAGGCTACCACGTCATCATCTCCTCCGCTTTTGACAGATCTTTTTGGGGCTGCTATGTTGATCAGCTTCGCAGTCTCGTTTGCTGGATTTTTCGTTTGAAATGCATTTCCCACGAACCGCACTTTTGTTTGAAAAGATTGTTCTTTTTGCTGCAATTGCCGTCTGCATCGTAGCAAGCTCTCTCCTAACCCATCAGAACTTCGCTTGGATC

mRNA sequence

CTGCCCATTTGCATCAAAATGCTGAAGCCTGCACCAGCCAAGAGTCCCCAGAATCCTGGGAAGATAATTCTGAGTCTTACTTTTCAGGCTACCACGTCATCATCTCCTCCGCTTTTGACAGATCTTTTTGGGGCTGCTATGTTGATCAGCTTCGCAGTCTCGTTTGCTGGATTTTTCGAAATGCATTTCCCACGAACCGCACTTTTGTTTGAAAAGATTGTTCTTTTTGCTGCAATTGCCGTCTGCATCGTAGCAAGCTCTCTCCTAACCCATCAGAACTTCGCTTGGATC

Coding sequence (CDS)

CTGCCCATTTGCATCAAAATGCTGAAGCCTGCACCAGCCAAGAGTCCCCAGAATCCTGGGAAGATAATTCTGAGTCTTACTTTTCAGGCTACCACGTCATCATCTCCTCCGCTTTTGACAGATCTTTTTGGGGCTGCTATGTTGATCAGCTTCGCAGTCTCGTTTGCTGGATTTTTCGAAATGCATTTCCCACGAACCGCACTTTTGTTTGAAAAGATTGTTCTTTTTGCTGCAATTGCCGTCTGCATCGTAGCAAGCTCTCTCCTAACCCATCAGAACTTCGCTTGGATC

Protein sequence

LPICIKMLKPAPAKSPQNPGKIILSLTFQATTSSSPPLLTDLFGAAMLISFAVSFAGFFEMHFPRTALLFEKIVLFAAIAVCIVASSLLTHQNFAWI

Homology

[Close]

BLAST of MC04g1067 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 1.29e-27
Identity = 71/109 (65.14%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   LPICIKMLKPAPA---KSPQNPGKIILSLTFQA-------TTSSSPPLLTDLFGAAMLIS 60
           LPICI M +P+PA   K+  N GK IL LTFQA       + +SSPPLLT LF AA+LIS
Sbjct: 21  LPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAVLIS 80

Query: 61  FAVSFAGFFEMH-FPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           FAVSFAG F  + FPR ALLFEKI  L AAI VCIVAS LL HQNFAWI
Sbjct: 81  FAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-LLIHQNFAWI 128

[Close]

BLAST of MC04g1067 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 100 bits (249), Expect = 1.85e-24
Identity = 68/109 (62.39%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 1   LPICIKMLKPAPA---KSPQNPGKIILSLTFQA-------TTSSSPPLLTDLFGAAMLIS 60
           LPICI M   +PA   K+  N G  IL LTFQA       +++SSPPLLT LFGAA+LIS
Sbjct: 32  LPICIIMQTASPANSSKTENNVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLIS 91

Query: 61  FAVSFAG-FFEMHFPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           FAVSF G F +  FPR ALLFEKI  L AAI VCI+AS LL HQNFAWI
Sbjct: 92  FAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILAS-LLIHQNFAWI 139

[Close]

BLAST of MC04g1067 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.62e-20
Identity = 60/109 (55.05%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   LPICIKMLKP--APAKSPQNPGKIILSLTFQATTS--------SSPPLLTDLFGAAMLIS 60
           LP+ I+M +   A A S Q  GKIILSL+FQA  +        S PPLL   F AA+ IS
Sbjct: 39  LPVFIRMQQSPQATADSSQKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFIS 98

Query: 61  FAVSFAGFF-EMHFPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           FAVSFA  F    FPRTA LFEK+  LF+A  VC +AS LL HQNFAWI
Sbjct: 99  FAVSFAALFLHNSFPRTAHLFEKVGALFSAFGVCFIASFLLVHQNFAWI 147

[Close]

BLAST of MC04g1067 vs. NCBI nr
Match: KAG6579132.1 (hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 6.24e-18
Identity = 53/95 (55.79%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 12  PAKSPQNPGKIILSLTFQA-------TTSSSPPLLTDLFGAAMLISFAVSFAGFFEMH-F 71
           P K   N GK I+ LT QA       + SSSPPLL  LFGA M ISF +SFAG F  + F
Sbjct: 22  PDKGHSNVGKAIIGLTSQALLAMFISSPSSSPPLLRVLFGATMFISFLLSFAGIFLRNAF 81

Query: 72  PRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           P+ A LFEK+  LFAAI V I+AS LL H+N+AWI
Sbjct: 82  PKAARLFEKLGALFAAIGVSIIASFLLMHENYAWI 116

[Close]

BLAST of MC04g1067 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.82e-17
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1   LPICIKMLKPAPAKSPQNPGKIILSLTFQATTS------SSPPLL-TDLFGAAMLISFAV 60
           LPICI+M +P PAKS Q+ GK IL LTFQA  +      SSPP L T LFGAA+LISFAV
Sbjct: 45  LPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAV 104

Query: 61  SFAGFF-EMHFPRTALLFEK 72
           SFAG F +  +PR ALLFEK
Sbjct: 105 SFAGLFLQTAYPRMALLFEK 124

[Close]

BLAST of MC04g1067 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 6.23e-28
Identity = 71/109 (65.14%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   LPICIKMLKPAPA---KSPQNPGKIILSLTFQA-------TTSSSPPLLTDLFGAAMLIS 60
           LPICI M +P+PA   K+  N GK IL LTFQA       + +SSPPLLT LF AA+LIS
Sbjct: 21  LPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAVLIS 80

Query: 61  FAVSFAGFFEMH-FPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           FAVSFAG F  + FPR ALLFEKI  L AAI VCIVAS LL HQNFAWI
Sbjct: 81  FAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-LLIHQNFAWI 128

[Close]

BLAST of MC04g1067 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 8.96e-25
Identity = 68/109 (62.39%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 1   LPICIKMLKPAPA---KSPQNPGKIILSLTFQA-------TTSSSPPLLTDLFGAAMLIS 60
           LPICI M   +PA   K+  N G  IL LTFQA       +++SSPPLLT LFGAA+LIS
Sbjct: 32  LPICIIMQTASPANSSKTENNVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLIS 91

Query: 61  FAVSFAG-FFEMHFPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           FAVSF G F +  FPR ALLFEKI  L AAI VCI+AS LL HQNFAWI
Sbjct: 92  FAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILAS-LLIHQNFAWI 139

[Close]

BLAST of MC04g1067 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.27e-20
Identity = 60/109 (55.05%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   LPICIKMLKP--APAKSPQNPGKIILSLTFQATTS--------SSPPLLTDLFGAAMLIS 60
           LP+ I+M +   A A S Q  GKIILSL+FQA  +        S PPLL   F AA+ IS
Sbjct: 39  LPVFIRMQQSPQATADSSQKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFIS 98

Query: 61  FAVSFAGFF-EMHFPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
           FAVSFA  F    FPRTA LFEK+  LF+A  VC +AS LL HQNFAWI
Sbjct: 99  FAVSFAALFLHNSFPRTAHLFEKVGALFSAFGVCFIASFLLVHQNFAWI 147

[Close]

BLAST of MC04g1067 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.79e-18
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1   LPICIKMLKPAPAKSPQNPGKIILSLTFQATTS------SSPPLL-TDLFGAAMLISFAV 60
           LPICI+M +P PAKS Q+ GK IL LTFQA  +      SSPP L T LFGAA+LISFAV
Sbjct: 45  LPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAV 104

Query: 61  SFAGFF-EMHFPRTALLFEK 72
           SFAG F +  +PR ALLFEK
Sbjct: 105 SFAGLFLQTAYPRMALLFEK 124

[Close]

BLAST of MC04g1067 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.82e-13
Identity = 52/107 (48.60%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 1   LPICIKMLKPAPAKSPQNPGKIILSLTFQATT--------SSSPPLLTDLFGAAMLISFA 60
           LPI IKM +P+P  SPQ  G   LSLTFQA          SSS PL + LF A ML SF 
Sbjct: 43  LPIYIKMQRPSPVNSPQF-GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFI 102

Query: 61  VSFAG-FFEMHFPRTALLFEKI-VLFAAIAVCIVASSLLTHQNFAWI 97
            S+ G   +  FP+TA L +    LFAAI  CI+ S LL + NF WI
Sbjct: 103 FSYDGVILQKPFPKTAQLLQTFGALFAAIGTCIIGS-LLLYPNFTWI 147

The following BLAST results are available for this feature:

BLAST of MC04g1067 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1067 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050246.1	1.29e-27	65.14	putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981...	[more]
KGN49803.1	1.85e-24	62.39	hypothetical protein Csa_004681 [Cucumis sativus]	[more]
KGN49808.1	2.62e-20	55.05	hypothetical protein Csa_004650 [Cucumis sativus]	[more]
KAG6579132.1	6.24e-18	55.79	hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022146444.1	1.82e-17	63.75	uncharacterized protein LOC111015658 [Momordica charantia]	[more]

BLAST of MC04g1067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7U1	6.23e-28	65.14	Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0KJN8	8.96e-25	62.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1	[more]
A0A0A0KJP2	1.27e-20	55.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1	[more]
A0A6J1CY58	8.79e-18	63.75	uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A0A0KQ03	2.82e-13	48.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1	[more]

BLAST of MC04g1067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g1067.1	MC04g1067.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane