MC04g1030 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g1030
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 18389700 .. 18389849 (+)
RNA-Seq ExpressionMC04g1030
SyntenyMC04g1030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGCCACCGCCGCTGCCACCTCAGCTCCTCGCTGGATTCCAAAACGCGGCCAAGTCCTCCGCCGCGTTCTTAAAAAGCTTTTCTTCTTCTGTCACTCTTCCGCCGCCCGGCGATCTCCTCCGCGAACCTCCTCCTCTCGCGTTTTTCCT

mRNA sequence

GCCGCCACCGCCGCTGCCACCTCAGCTCCTCGCTGGATTCCAAAACGCGGCCAAGTCCTCCGCCGCGTTCTTAAAAAGCTTTTCTTCTTCTGTCACTCTTCCGCCGCCCGGCGATCTCCTCCGCGAACCTCCTCCTCTCGCGTTTTTCCT

Coding sequence (CDS)

GCCGCCACCGCCGCTGCCACCTCAGCTCCTCGCTGGATTCCAAAACGCGGCCAAGTCCTCCGCCGCGTTCTTAAAAAGCTTTTCTTCTTCTGTCACTCTTCCGCCGCCCGGCGATCTCCTCCGCGAACCTCCTCCTCTCGCGTTTTTCCT

Protein sequence

AATAAATSAPRWIPKRGQVLRRVLKKLFFFCHSSAARRSPPRTSSSRVFP
Homology
BLAST of MC04g1030 vs. NCBI nr
Match: KGN49746.1 (hypothetical protein Csa_017810 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.64e-11
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 9  APRWIPKRGQVLRRVLKKLFFFCHSSAARRSPPRTSSSRVF 49
          APRWIPKRG+VLRRVLK LFFFC  S     PP  SSSRVF
Sbjct: 6  APRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRVF 46

BLAST of MC04g1030 vs. NCBI nr
Match: KAG6579170.1 (hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 3.93e-09
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 2  ATAAATSAPRWIPKRGQVLRRVLKKLFFFCHSSAAR-RSPPRT---------SSSRVFP 50
          ATA A + PR IPKRG VLRRVL+KLFFFC  SAA  ++PP           SSSRVFP
Sbjct: 8  ATAVAVTTPRLIPKRGAVLRRVLEKLFFFCICSAANPKAPPPPPPPPPPQFFSSSRVFP 66

BLAST of MC04g1030 vs. NCBI nr
Match: KAG6594821.1 (hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 8.12e-08
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 4  AAATSAPRWIPKRGQVLRRVLKKLFFFCHSSAARRSPPRTSSS 46
          AA  +APRWIPKRGQVLRR+LKKLFF C  S    SPP  S++
Sbjct: 51 AATGAAPRWIPKRGQVLRRILKKLFFLCFCS----SPPPPSAA 89

BLAST of MC04g1030 vs. NCBI nr
Match: KAG5531904.1 (hypothetical protein RHGRI_026493 [Rhododendron griersonianum])

HSP 1 Score: 44.3 bits (103), Expect = 3.88e-04
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 1  AATAAATSAPRWIPKRGQVLRRVLKKLFFFCHSSAARRSPPRTSSSRVFP 50
          AA   A +APRWIPKRGQVLR VLK + F C  S   +   R++ S V P
Sbjct: 14 AAGGGAVTAPRWIPKRGQVLRNVLK-MCFPCLCSQGGKKRRRSNKSVVLP 62

BLAST of MC04g1030 vs. ExPASy TrEMBL
Match: A0A0A0KPU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.93e-12
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 9  APRWIPKRGQVLRRVLKKLFFFCHSSAARRSPPRTSSSRVF 49
          APRWIPKRG+VLRRVLK LFFFC  S     PP  SSSRVF
Sbjct: 6  APRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRVF 46

BLAST of MC04g1030 vs. ExPASy TrEMBL
Match: A0A396GMI2 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0375401 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 8.71e-04
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 0

Query: 4  AAATSAPRWIPKRGQVLRRVLKKL--FFFCHSSAARRSPPRTSSSRVFP 50
          A  TS+PR IP+RGQVL+RV K +  F  C SS+A  +  +T     FP
Sbjct: 2  ATTTSSPRLIPERGQVLKRVFKMVLSFLLCSSSSASSTSTKTKRVHSFP 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN49746.11.64e-1173.17hypothetical protein Csa_017810 [Cucumis sativus][more]
KAG6579170.13.93e-0959.32hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594821.18.12e-0865.12hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG5531904.13.88e-0452.00hypothetical protein RHGRI_026493 [Rhododendron griersonianum][more]
Match NameE-valueIdentityDescription
A0A0A0KPU07.93e-1273.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1[more]
A0A396GMI28.71e-0446.94Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0375401 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g1030.1MC04g1030.1mRNA