MC04g1026 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g1026
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 18332465 .. 18332656 (+)
RNA-Seq ExpressionMC04g1026
SyntenyMC04g1026
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAGCCAACCTTGACAAAAGACCAAACTCCTTTGGGATCTCACCCGTAAGTTCATTACTCGTGAGAGAAACCCATTCAAGATTGCTGCAATTGAACAATTCCGTCGGAATTTCGCCGCTTATACGATTGTTATTAAGTATAAGATCCTTCAAGCTCCTGCACTTCCCCAATTCTGGAGGGACCTTCCCT

mRNA sequence

AAAACAGCCAACCTTGACAAAAGACCAAACTCCTTTGGGATCTCACCCGTAAGTTCATTACTCGTGAGAGAAACCCATTCAAGATTGCTGCAATTGAACAATTCCGTCGGAATTTCGCCGCTTATACGATTGTTATTAAGTATAAGATCCTTCAAGCTCCTGCACTTCCCCAATTCTGGAGGGACCTTCCCT

Coding sequence (CDS)

AAAACAGCCAACCTTGACAAAAGACCAAACTCCTTTGGGATCTCACCCGTAAGTTCATTACTCGTGAGAGAAACCCATTCAAGATTGCTGCAATTGAACAATTCCGTCGGAATTTCGCCGCTTATACGATTGTTATTAAGTATAAGATCCTTCAAGCTCCTGCACTTCCCCAATTCTGGAGGGACCTTCCCT

Protein sequence

KTANLDKRPNSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNSGGTFP
Homology
BLAST of MC04g1026 vs. NCBI nr
Match: KAF2912398.1 (hypothetical protein DAI22_10g006800 [Oryza sativa Japonica Group])

HSP 1 Score: 55.1 bits (131), Expect = 1.97e-07
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 2   TANLDKRPNSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNSGG 61
           TA  D RPNS  + PV  LLV +THSR +QL +S G+SP ++LL  I   +  H P S G
Sbjct: 53  TARRDSRPNSGRMVPVIWLLVSDTHSRPVQLKSSTGMSPPMKLLFRISVRRFRHCPRSAG 112

Query: 62  TFP 64
             P
Sbjct: 113 IRP 115

BLAST of MC04g1026 vs. NCBI nr
Match: OAD21754.1 (hypothetical protein THIOM_002471 [Candidatus Thiomargarita nelsonii])

HSP 1 Score: 50.1 bits (118), Expect = 8.99e-06
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 10  NSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNSGG 61
           NS GISPVS L  R   S+LL+L NSVGISP+  LL S R   L  FPNS G
Sbjct: 51  NSVGISPVSWLKDRLIVSKLLRLLNSVGISPVSWLLFSQRVSNLFRFPNSLG 102

BLAST of MC04g1026 vs. NCBI nr
Match: KAF1893295.1 (hypothetical protein Lal_00001751 [Lupinus albus])

HSP 1 Score: 47.8 bits (112), Expect = 3.42e-04
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 6  DKRPNSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNSGGTFP 64
          D R  S GI PVS+L+ R  H++LLQ  +S GI P+  LLLS +  +L +FP   G  P
Sbjct: 17 DPRLLSGGIGPVSALVFRSNHTKLLQSPSSGGIRPVNELLLSFKIARLDNFPIQDGISP 75

BLAST of MC04g1026 vs. ExPASy TrEMBL
Match: A0A176S1B5 (Uncharacterized protein OS=Candidatus Thiomargarita nelsonii OX=1003181 GN=THIOM_002471 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.35e-06
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 10  NSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNSGG 61
           NS GISPVS L  R   S+LL+L NSVGISP+  LL S R   L  FPNS G
Sbjct: 51  NSVGISPVSWLKDRLIVSKLLRLLNSVGISPVSWLLFSQRVSNLFRFPNSLG 102

BLAST of MC04g1026 vs. ExPASy TrEMBL
Match: A0A6A5P739 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001751 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.65e-04
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 6  DKRPNSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNSGGTFP 64
          D R  S GI PVS+L+ R  H++LLQ  +S GI P+  LLLS +  +L +FP   G  P
Sbjct: 17 DPRLLSGGIGPVSALVFRSNHTKLLQSPSSGGIRPVNELLLSFKIARLDNFPIQDGISP 75

BLAST of MC04g1026 vs. ExPASy TrEMBL
Match: A0A5J5UB77 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G238900v1 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.01e-04
Identity = 28/58 (48.28%), Postives = 32/58 (55.17%), Query Frame = 0

Query: 2   TANLDKRPNSFGISPVSSLLVRETHSRLLQLNNSVGISPLIRLLLSIRSFKLLHFPNS 59
           T   DKRPN  GISPVS L V  T+  L Q +   GISPL  LL+   +  LL  P S
Sbjct: 52  TFRFDKRPNEDGISPVSWLFVISTNISLEQADKLEGISPLTELLVRSNASSLLKPPIS 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF2912398.11.97e-0747.62hypothetical protein DAI22_10g006800 [Oryza sativa Japonica Group][more]
OAD21754.18.99e-0659.62hypothetical protein THIOM_002471 [Candidatus Thiomargarita nelsonii][more]
KAF1893295.13.42e-0445.76hypothetical protein Lal_00001751 [Lupinus albus][more]
Match NameE-valueIdentityDescription
A0A176S1B54.35e-0659.62Uncharacterized protein OS=Candidatus Thiomargarita nelsonii OX=1003181 GN=THIOM... [more]
A0A6A5P7391.65e-0445.76Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001751 PE=4 SV=1[more]
A0A5J5UB778.01e-0448.28Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G238900v1 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g1026.1MC04g1026.1mRNA