MC04g0905 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0905
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	MC04: 16484366 .. 16484536 (+)
RNA-Seq Expression	MC04g0905
Synteny	MC04g0905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTCCATACTTTGGGGCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTAATCGAACCCATATTTGCCCAATGGATTCAATCTGCTCAT

mRNA sequence

ATGTTAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTCCATACTTTGGGGCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTAATCGAACCCATATTTGCCCAATGGATTCAATCTGCTCAT

Coding sequence (CDS)

ATGTTAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTCCATACTTTGGGGCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTAATCGAACCCATATTTGCCCAATGGATTCAATCTGCTCAT

Protein sequence

MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH

Homology

[Close]

BLAST of MC04g0905 vs. ExPASy Swiss-Prot
Match: Q3V535 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus OX=4465 GN=psaB PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 58
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 411 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 467

[Close]

BLAST of MC04g0905 vs. ExPASy Swiss-Prot
Match: A4QJB4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=434059 GN=psaB PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 58
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 411 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 467

[Close]

BLAST of MC04g0905 vs. ExPASy Swiss-Prot
Match: A4QJJ8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=72657 GN=psaB PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 58
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 411 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 467

[Close]

BLAST of MC04g0905 vs. ExPASy Swiss-Prot
Match: A1EA07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 GN=psaB PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 58
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 411 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 467

[Close]

BLAST of MC04g0905 vs. ExPASy Swiss-Prot
Match: Q33332 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=psaB PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 58
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 411 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 467

[Close]

BLAST of MC04g0905 vs. NCBI nr
Match: KJB10022.1 (hypothetical protein B456_001G180600, partial [Gossypium raimondii])

HSP 1 Score: 122 bits (305), Expect = 1.83e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 29 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 85

[Close]

BLAST of MC04g0905 vs. NCBI nr
Match: OMP13198.1 (Photosystem I PsaA/PsaB [Corchorus olitorius])

HSP 1 Score: 122 bits (305), Expect = 3.41e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 29 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 85

[Close]

BLAST of MC04g0905 vs. NCBI nr
Match: VDD65349.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 6.16e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 60  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 116

[Close]

BLAST of MC04g0905 vs. NCBI nr
Match: VDD24445.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 122 bits (305), Expect = 7.13e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57

[Close]

BLAST of MC04g0905 vs. NCBI nr
Match: VDD65627.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 1.27e-33
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 22 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 78

[Close]

BLAST of MC04g0905 vs. ExPASy TrEMBL
Match: A0A1J3JDJ4 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR8487_c0_g1_i1_g.26888 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 6.44e-35
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 11 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 67

[Close]

BLAST of MC04g0905 vs. ExPASy TrEMBL
Match: A0A0D2M066 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G180600 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 8.87e-35
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 29 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 85

[Close]

BLAST of MC04g0905 vs. ExPASy TrEMBL
Match: A0A1R3L1N9 (Photosystem I PsaA/PsaB OS=Corchorus olitorius OX=93759 GN=COLO4_02099 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.65e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 29 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 85

[Close]

BLAST of MC04g0905 vs. ExPASy TrEMBL
Match: A0A453SG27 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 2.79e-34
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
          MLDHKEAIISHLSWASLFLGFHTLG+YVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 14 MLDHKEAIISHLSWASLFLGFHTLGIYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 70

[Close]

BLAST of MC04g0905 vs. ExPASy TrEMBL
Match: A0A3P6HHE4 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60577H PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.98e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 57
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 60  MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 116

[Close]

BLAST of MC04g0905 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-28
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 58
           MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH
Sbjct: 411 MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAH 467

[Close]

BLAST of MC04g0905 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1   MLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQS 58
           +L H++AIISHL+W  +FLGFH+ GLY+HND M A G P+       I ++P+FAQWIQ+
Sbjct: 427 VLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQN 486

The following BLAST results are available for this feature:

BLAST of MC04g0905 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V535	1.6e-27	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus OX=4465 GN=psaB...	[more]
A4QJB4	1.6e-27	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=4340...	[more]
A4QJJ8	1.6e-27	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=726...	[more]
A1EA07	1.6e-27	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 ...	[more]
Q33332	1.6e-27	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=p...	[more]

BLAST of MC04g0905 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB10022.1	1.83e-34	100.00	hypothetical protein B456_001G180600, partial [Gossypium raimondii]	[more]
OMP13198.1	3.41e-34	100.00	Photosystem I PsaA/PsaB [Corchorus olitorius]	[more]
VDD65349.1	6.16e-34	100.00	unnamed protein product [Brassica oleracea]	[more]
VDD24445.1	7.13e-34	100.00	unnamed protein product [Brassica rapa]	[more]
VDD65627.1	1.27e-33	100.00	unnamed protein product [Brassica oleracea]	[more]

BLAST of MC04g0905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J3JDJ4	6.44e-35	100.00	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR848...	[more]
A0A0D2M066	8.87e-35	100.00	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G1...	[more]
A0A1R3L1N9	1.65e-34	100.00	Photosystem I PsaA/PsaB OS=Corchorus olitorius OX=93759 GN=COLO4_02099 PE=4 SV=1	[more]
A0A453SG27	2.79e-34	98.25	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A3P6HHE4	2.98e-34	100.00	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60577H PE=4 SV=1	[more]

BLAST of MC04g0905 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	1.1e-28	100.00	Photosystem I, PsaA/PsaB protein	[more]
ATCG00350.1	1.1e-15	53.23	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..57 e-value: 4.6E-33 score: 116.2
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 1..57
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..57 e-value: 5.9E-27 score: 94.2
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..57
None	No IPR available	PANTHER	PTHR30128:SF63	PHOTOSYSTEM I CHLOROPHYLL A APOPROTEIN A2	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0905.1	MC04g0905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity