MC04g0880 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0880
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115
Location	MC04: 15207595 .. 15207819 (+)
RNA-Seq Expression	MC04g0880
Synteny	MC04g0880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATCTTGGAGATGAAGGCAATATTTCTGATGCCCGGAGGAGAGAGGCGCTAGAAGGAACTGTTGAACGAATGATTCGTAGCATGGAGGCATTGACAGAACGGATAGGAAGGTTGGAGACTCAAAACCAAGCTCAGGAGAGAGTTCCACCACCTCCACCACCACGTGTTATGGATGAGGAAGAGTATGAAGGTGATGGATCCGATCATTGGGAGGACGAT

mRNA sequence

ATGGCTAATCTTGGAGATGAAGGCAATATTTCTGATGCCCGGAGGAGAGAGGCGCTAGAAGGAACTGTTGAACGAATGATTCGTAGCATGGAGGCATTGACAGAACGGATAGGAAGGTTGGAGACTCAAAACCAAGCTCAGGAGAGAGTTCCACCACCTCCACCACCACGTGTTATGGATGAGGAAGAGTATGAAGGTGATGGATCCGATCATTGGGAGGACGAT

Coding sequence (CDS)

ATGGCTAATCTTGGAGATGAAGGCAATATTTCTGATGCCCGGAGGAGAGAGGCGCTAGAAGGAACTGTTGAACGAATGATTCGTAGCATGGAGGCATTGACAGAACGGATAGGAAGGTTGGAGACTCAAAACCAAGCTCAGGAGAGAGTTCCACCACCTCCACCACCACGTGTTATGGATGAGGAAGAGTATGAAGGTGATGGATCCGATCATTGGGAGGACGAT

Protein sequence

MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMDEEEYEGDGSDHWEDD

Homology

[Close]

BLAST of MC04g0880 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 134 bits (337), Expect = 2.07e-34
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          MANLG EGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQA+ RVPPPP  RVMD
Sbjct: 1  MANLGXEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMD 60

Query: 61 EEEYEGDGSDHWEDD 75
          E+EYEGDGSDHWEDD
Sbjct: 61 EDEYEGDGSDHWEDD 75

[Close]

BLAST of MC04g0880 vs. NCBI nr
Match: XP_023520282.1 (uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 2.49e-13
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          M N  D  NI+DAR REA + T+ER+IR +E LT+RIGRLE QNQA++R+P P P     
Sbjct: 1  MENPDDNTNITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQPTPST--- 60

Query: 61 EEEYEGDGSDHWED 74
           + YEGD SDH ED
Sbjct: 61 -DTYEGDNSDHHED 70

[Close]

BLAST of MC04g0880 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 2.53e-13
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          M N  D  NI+DAR REA + T+ER+IR +E LT+RIGRLE QNQA++R+P P P     
Sbjct: 1  MENPDDNTNITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQPTPST--- 60

Query: 61 EEEYEGDGSDHWED 74
           + YEGD SDH ED
Sbjct: 61 -DTYEGDNSDHHED 70

[Close]

BLAST of MC04g0880 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 7.79e-12
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          M N  D  +I+DAR REA + T++R+IR +E LT+RIGRLE QNQA++R+P P P     
Sbjct: 1  MENPDDNTDITDARLREAQQRTMKRLIRGIEELTDRIGRLEIQNQARQRIPLPAPST--- 60

Query: 61 EEEYEGDGSDHWED 74
           + YEGD SDH ED
Sbjct: 61 -DTYEGDNSDHHED 70

[Close]

BLAST of MC04g0880 vs. NCBI nr
Match: XP_022971169.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 1.07e-11
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          M N  +  +I+DAR REA + T+ER+IR +E LT+RIGRLE QNQA++R+P P P     
Sbjct: 1  MENPDNNTDITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPLPTPST--- 60

Query: 61 EEEYEGDGSDHWED 74
           + YEGD SDH ED
Sbjct: 61 -DTYEGDNSDHHED 70

[Close]

BLAST of MC04g0880 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 1.00e-34
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          MANLG EGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQA+ RVPPPP  RVMD
Sbjct: 1  MANLGXEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMD 60

Query: 61 EEEYEGDGSDHWEDD 75
          E+EYEGDGSDHWEDD
Sbjct: 61 EDEYEGDGSDHWEDD 75

[Close]

BLAST of MC04g0880 vs. ExPASy TrEMBL
Match: A0A6J1I7T3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX=3661 GN=LOC111469948 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.16e-12
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 60
          M N  +  +I+DAR REA + T+ER+IR +E LT+RIGRLE QNQA++R+P P P     
Sbjct: 1  MENPDNNTDITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPLPTPST--- 60

Query: 61 EEEYEGDGSDHWED 74
           + YEGD SDH ED
Sbjct: 61 -DTYEGDNSDHHED 70

[Close]

BLAST of MC04g0880 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.44e-08
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1  MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVM- 60
          M N  DE  +     REA +G + RMI +MEALT+R+ R E +N+A+ER+PPP  P ++ 
Sbjct: 1  MENQNDEVQL-----REAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLI 60

Query: 61 --DEEEYEGDGSDHWEDD 75
            ++ + EGDGSD  +DD
Sbjct: 61 NHNDNQDEGDGSDDLDDD 73

[Close]

BLAST of MC04g0880 vs. ExPASy TrEMBL
Match: A0A5D3CHG3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001250 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.55e-04
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 26 MIRSMEALTERIGRLETQNQAQERVPPPPPPRVM---DEEEYEGDGSDHWEDD 75
          MI +MEALT+R+ R E +N+A+ER+PPP  P ++   ++ + EGDGSD  +DD
Sbjct: 1  MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDD 53

The following BLAST results are available for this feature:

BLAST of MC04g0880 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157414.1	2.07e-34	92.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]	[more]
XP_023520282.1	2.49e-13	56.76	uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]	[more]
XP_023520835.1	2.53e-13	56.76	LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp....	[more]
XP_023553652.1	7.79e-12	54.05	uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]	[more]
XP_022971169.1	1.07e-11	54.05	LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita ma...	[more]

BLAST of MC04g0880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWE9	1.00e-34	92.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia...	[more]
A0A6J1I7T3	5.16e-12	54.05	LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX...	[more]
A0A5A7TK52	9.44e-08	44.87	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CHG3	7.55e-04	49.06	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MC04g0880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0880.1	MC04g0880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding