MC04g0688 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g0688
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPLATZ transcription factor family protein
LocationMC04: 6638970 .. 6639127 (+)
RNA-Seq ExpressionMC04g0688
SyntenyMC04g0688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCTGAAACCTCTCCTTAAAGAGAGCTTAGTTGTTCAAAGCAAGCTCCATATTGATTCTCACAAGAGCAAATGCAATATATGTATTTTTGGACTGTATGAACAACACTTTCTCTTGACTTTGCCTATCAAAAAGATCATCGCGCCATTCGGGTCAAA

mRNA sequence

TGGCTGAAACCTCTCCTTAAAGAGAGCTTAGTTGTTCAAAGCAAGCTCCATATTGATTCTCACAAGAGCAAATGCAATATATGTATTTTTGGACTGTATACAACACTTTCTCTTGACTTTGCCTATCAAAAAGATCATCGCGCCATTCGGGTCAAA

Coding sequence (CDS)

TGGCTGAAACCTCTCCTTAAAGAGAGCTTAGTTGTTCAAAGCAAGCTCCATATTGATTCTCACAAGAGCAAATGCAATATATGTATTTTTGGACTGTATACAACACTTTCTCTTGACTTTGCCTATCAAAAAGATCATCGCGCCATTCGGGTCAAA

Protein sequence

WLKPLLKESLVVQSKLHIDSHKSKCNICIFGLYTTLSLDFAYQKDHRAIRVK
Homology
[Close]
BLAST of MC04g0688 vs. NCBI nr
Match: ESR41676.1 (hypothetical protein CICLE_v10012712mg [Citrus clementina] >KDO43777.1 hypothetical protein CISIN_1g027730mg [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 9.95e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. NCBI nr
Match: XP_022145463.1 (uncharacterized protein LOC111014906 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 2.28e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLHIDSHKS+CN+    C+ G   +L L  AY KDHRAI+++
Sbjct: 16 WLKPLLRESFFVQCKLHIDSHKSECNMYCLDCMNGALCSLCL--AYHKDHRAIQIR 69

[Close]
BLAST of MC04g0688 vs. NCBI nr
Match: KDO43776.1 (hypothetical protein CISIN_1g027730mg [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 2.64e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. NCBI nr
Match: KDO43775.1 (hypothetical protein CISIN_1g027730mg [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 2.79e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. NCBI nr
Match: XP_006428434.1 (uncharacterized protein LOC18039488 [Citrus clementina] >XP_006491726.1 uncharacterized protein LOC102624094 [Citrus sinensis] >ESR41674.1 hypothetical protein CICLE_v10012712mg [Citrus clementina] >GAY56571.1 hypothetical protein CUMW_172920 [Citrus unshiu])

HSP 1 Score: 65.9 bits (159), Expect = 3.03e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. ExPASy TrEMBL
Match: A0A067DXP6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027730mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.82e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. ExPASy TrEMBL
Match: V4SWY4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10012712mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.82e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. ExPASy TrEMBL
Match: A0A6J1CW01 (uncharacterized protein LOC111014906 OS=Momordica charantia OX=3673 GN=LOC111014906 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.11e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLHIDSHKS+CN+    C+ G   +L L  AY KDHRAI+++
Sbjct: 16 WLKPLLRESFFVQCKLHIDSHKSECNMYCLDCMNGALCSLCL--AYHKDHRAIQIR 69

[Close]
BLAST of MC04g0688 vs. ExPASy TrEMBL
Match: A0A067DYU2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027730mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.28e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. ExPASy TrEMBL
Match: A0A067DQE4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027730mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.35e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 52
          WLKPLL+ES  VQ KLH DSHKS+CN+    C+ G + +L LD  Y KDHRAI+++
Sbjct: 13 WLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66

[Close]
BLAST of MC04g0688 vs. TAIR 10
Match: AT1G32700.1 (PLATZ transcription factor family protein )

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-09
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 53
          WLKPLL+E   VQ KLH DSHKS+CN+    C  G   +L L F   KDH AI+++
Sbjct: 14 WLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSF--HKDHHAIQIR 67

[Close]
BLAST of MC04g0688 vs. TAIR 10
Match: AT1G21000.1 (PLATZ transcription factor family protein )

HSP 1 Score: 40.8 bits (94), Expect = 3.9e-04
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 53
          WL P+L+ S  V   +H+DS+K++CN+    C    + +  L     KDHR ++++
Sbjct: 18 WLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCL--VKHKDHRVVQIR 71

[Close]
BLAST of MC04g0688 vs. TAIR 10
Match: AT1G21000.2 (PLATZ transcription factor family protein )

HSP 1 Score: 40.8 bits (94), Expect = 3.9e-04
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 1  WLKPLLKESLVVQSKLHIDSHKSKCNI----CIFGLYTTLSLDFAYQKDHRAIRVK 53
          WL P+L+ S  V   +H+DS+K++CN+    C    + +  L     KDHR ++++
Sbjct: 15 WLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCL--VKHKDHRVVQIR 68

The following BLAST results are available for this feature:
BLAST of MC04g0688 vs.
Match NameE-valueIdentityDescription
BLAST of MC04g0688 vs. NCBI nr
Match NameE-valueIdentityDescription
ESR41676.19.95e-1257.14hypothetical protein CICLE_v10012712mg [Citrus clementina] >KDO43777.1 hypotheti... [more]
XP_022145463.12.28e-1158.93uncharacterized protein LOC111014906 [Momordica charantia][more]
KDO43776.12.64e-1157.14hypothetical protein CISIN_1g027730mg [Citrus sinensis][more]
KDO43775.12.79e-1157.14hypothetical protein CISIN_1g027730mg [Citrus sinensis][more]
XP_006428434.13.03e-1157.14uncharacterized protein LOC18039488 [Citrus clementina] >XP_006491726.1 uncharac... [more]
BLAST of MC04g0688 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A067DXP64.82e-1257.14Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027730mg PE=4 SV=1[more]
V4SWY44.82e-1257.14Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10012712mg PE=4 ... [more]
A0A6J1CW011.11e-1158.93uncharacterized protein LOC111014906 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A067DYU21.28e-1157.14Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027730mg PE=4 SV=1[more]
A0A067DQE41.35e-1157.14Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027730mg PE=4 SV=1[more]
BLAST of MC04g0688 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G32700.14.0e-0951.79PLATZ transcription factor family protein [more]
AT1G21000.13.9e-0432.14PLATZ transcription factor family protein [more]
AT1G21000.23.9e-0432.14PLATZ transcription factor family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g0688.1MC04g0688.1mRNA