MC04g0624 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0624
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	rRNA intron-encoded homing endonuclease, putative
Location	MC04: 5660724 .. 5661220 (-)
RNA-Seq Expression	MC04g0624
Synteny	MC04g0624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAAAAGCTCGTAGTTGGACCTTGGGTTGGGTCGGTCGGTCCGCCTATGGTGAGCACCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGGCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATATATTAGCATGGGATAACATCATAGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCGAGGGGA

mRNA sequence

GTTAAAAAGCTCGTAGTTGGACCTTGGGTTGGGTCGGTCGGTCCGCCTATGGTGAGCACCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGGCGGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCGAGGGGA

Coding sequence (CDS)

GTTAAAAAGCTCGTAGTTGGACCTTGGGTTGGGTCGGTCGGTCCGCCTATGGTGAGCACCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGGCGGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCGAGGGGA

Protein sequence

VKKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGRDFDPILLAFGIGVMINRDSRGHSYFIVRDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG

Homology

[Close]

BLAST of MC04g0624 vs. NCBI nr
Match: TKS05958.1 (hypothetical protein D5086_0000127860 [Populus alba] >TKS12471.1 hypothetical protein D5086_0000063000 [Populus alba])

HSP 1 Score: 170 bits (430), Expect = 1.20e-51
Identity = 92/116 (79.31%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   VKKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDS 60
           VKKLVVG WVGS GPP V TGRLVPS GDALL+LTGR    DFDPI+LAFGIGVMINRDS
Sbjct: 34  VKKLVVGLWVGSAGPPQVCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDS 93

Query: 61  RGHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           RGHSYFIVR          DTVLVSTINDADQGLADVA RTPPAPYEKSK LGS G
Sbjct: 94  RGHSYFIVRERKLGARRRSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGG 149

[Close]

BLAST of MC04g0624 vs. NCBI nr
Match: KAG2370538.1 (uncharacterized protein HKW66_Vig0249540 [Vigna angularis])

HSP 1 Score: 168 bits (426), Expect = 4.86e-51
Identity = 91/116 (78.45%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 1   VKKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDS 60
           VKKLVVGPWVGS+GPP+V TG LVPSAGDALL+LTGR    D DPI+LAFGIGVMINRDS
Sbjct: 34  VKKLVVGPWVGSIGPPLVCTGLLVPSAGDALLALTGRVVPPDSDPIVLAFGIGVMINRDS 93

Query: 61  RGHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           RGHSYFIVR          DTVLVSTINDADQG ADVA RTP APYEKSKSLGS G
Sbjct: 94  RGHSYFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 149

[Close]

BLAST of MC04g0624 vs. NCBI nr
Match: TKR79120.1 (hypothetical protein D5086_0000275650 [Populus alba])

HSP 1 Score: 169 bits (427), Expect = 9.44e-51
Identity = 91/115 (79.13%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 2   KKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDSR 61
           KKLVVG WVGS GPP V TGRLVPS GDALL+LTGR    DFDPI+LAFGIGVMINRDSR
Sbjct: 68  KKLVVGLWVGSAGPPQVCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSR 127

Query: 62  GHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           GHSYFIVR          DTVLVSTINDADQGLADVA RTPPAPYEKSK LGS G
Sbjct: 128 GHSYFIVRERKLGARRRSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGG 182

[Close]

BLAST of MC04g0624 vs. NCBI nr
Match: KYP77402.1 (hypothetical protein KK1_049101, partial [Cajanus cajan])

HSP 1 Score: 166 bits (420), Expect = 1.46e-50
Identity = 91/116 (78.45%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   VKKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDS 60
           VKKLVVGPWVGSVGPP+V T RLVPSAGDALL L GR    D DPI+LAFGIGVMINRDS
Sbjct: 2   VKKLVVGPWVGSVGPPLVCTDRLVPSAGDALLDLIGRVVPPDSDPIVLAFGIGVMINRDS 61

Query: 61  RGHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           RGHSYFIVR          DTVLVSTINDADQG ADVA RTP APYEKSKSLGS G
Sbjct: 62  RGHSYFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 117

[Close]

BLAST of MC04g0624 vs. NCBI nr
Match: KAG4975632.1 (hypothetical protein JHK86_035106 [Glycine max])

HSP 1 Score: 169 bits (429), Expect = 1.49e-50
Identity = 92/115 (80.00%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 2   KKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDSR 61
           KKLVVGPWVGS+GPP V TGRLVPSAGDALLSLTGR    D DPI+LAFGIGVMINRDSR
Sbjct: 107 KKLVVGPWVGSIGPPPVCTGRLVPSAGDALLSLTGRVVPPDSDPIVLAFGIGVMINRDSR 166

Query: 62  GHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           GHSYFIVR          DTVLVSTINDADQG ADVA RTP APYEKSKSLGS G
Sbjct: 167 GHSYFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 221

[Close]

BLAST of MC04g0624 vs. ExPASy TrEMBL
Match: A0A4U5QPX7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000063000 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 5.79e-52
Identity = 92/116 (79.31%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   VKKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDS 60
           VKKLVVG WVGS GPP V TGRLVPS GDALL+LTGR    DFDPI+LAFGIGVMINRDS
Sbjct: 34  VKKLVVGLWVGSAGPPQVCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDS 93

Query: 61  RGHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           RGHSYFIVR          DTVLVSTINDADQGLADVA RTPPAPYEKSK LGS G
Sbjct: 94  RGHSYFIVRERKLGARRRSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGG 149

[Close]

BLAST of MC04g0624 vs. ExPASy TrEMBL
Match: A0A4U5N9R9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000275650 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 4.57e-51
Identity = 91/115 (79.13%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 2   KKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDSR 61
           KKLVVG WVGS GPP V TGRLVPS GDALL+LTGR    DFDPI+LAFGIGVMINRDSR
Sbjct: 68  KKLVVGLWVGSAGPPQVCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSR 127

Query: 62  GHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           GHSYFIVR          DTVLVSTINDADQGLADVA RTPPAPYEKSK LGS G
Sbjct: 128 GHSYFIVRERKLGARRRSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGG 182

[Close]

BLAST of MC04g0624 vs. ExPASy TrEMBL
Match: A0A151UDL9 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049101 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 7.05e-51
Identity = 91/116 (78.45%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   VKKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDS 60
           VKKLVVGPWVGSVGPP+V T RLVPSAGDALL L GR    D DPI+LAFGIGVMINRDS
Sbjct: 2   VKKLVVGPWVGSVGPPLVCTDRLVPSAGDALLDLIGRVVPPDSDPIVLAFGIGVMINRDS 61

Query: 61  RGHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           RGHSYFIVR          DTVLVSTINDADQG ADVA RTP APYEKSKSLGS G
Sbjct: 62  RGHSYFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 117

[Close]

BLAST of MC04g0624 vs. ExPASy TrEMBL
Match: I1LXT1 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G013100 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 7.23e-51
Identity = 92/115 (80.00%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 2   KKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDSR 61
           KKLVVGPWVGS+GPP V TGRLVPSAGDALLSLTGR    D DPI+LAFGIGVMINRDSR
Sbjct: 107 KKLVVGPWVGSIGPPPVCTGRLVPSAGDALLSLTGRVVPPDSDPIVLAFGIGVMINRDSR 166

Query: 62  GHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           GHSYFIVR          DTVLVSTINDADQG ADVA RTP APYEKSKSLGS G
Sbjct: 167 GHSYFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 221

[Close]

BLAST of MC04g0624 vs. ExPASy TrEMBL
Match: A0A4D6LMI4 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g736 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 8.10e-51
Identity = 90/115 (78.26%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 2   KKLVVGPWVGSVGPPMVSTGRLVPSAGDALLSLTGR----DFDPILLAFGIGVMINRDSR 61
           KKLVVGPWVGS+GPP+V TG LVPSAGDALL+LTGR    D DPI+LAFGIGVMINRDSR
Sbjct: 41  KKLVVGPWVGSIGPPLVCTGLLVPSAGDALLALTGRVVPPDSDPIVLAFGIGVMINRDSR 100

Query: 62  GHSYFIVR----------DTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSRG 102
           GHSYFIVR          DTVLVSTINDADQG ADVA RTP APYEKSKSLGS G
Sbjct: 101 GHSYFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 155

The following BLAST results are available for this feature:

BLAST of MC04g0624 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0624 vs. NCBI nr


Match Name	E-value	Identity	Description
TKS05958.1	1.20e-51	79.31	hypothetical protein D5086_0000127860 [Populus alba] >TKS12471.1 hypothetical pr...	[more]
KAG2370538.1	4.86e-51	78.45	uncharacterized protein HKW66_Vig0249540 [Vigna angularis]	[more]
TKR79120.1	9.44e-51	79.13	hypothetical protein D5086_0000275650 [Populus alba]	[more]
KYP77402.1	1.46e-50	78.45	hypothetical protein KK1_049101, partial [Cajanus cajan]	[more]
KAG4975632.1	1.49e-50	80.00	hypothetical protein JHK86_035106 [Glycine max]	[more]

BLAST of MC04g0624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5QPX7	5.79e-52	79.31	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000063000 PE=4 SV=1	[more]
A0A4U5N9R9	4.57e-51	79.13	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000275650 PE=4 SV=1	[more]
A0A151UDL9	7.05e-51	78.45	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049101 PE=4 S...	[more]
I1LXT1	7.23e-51	80.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G013100 PE=4 SV=1	[more]
A0A4D6LMI4	8.10e-51	78.26	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g736 PE=4 SV=1	[more]

BLAST of MC04g0624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	INTRON-ENCODED HOMING ENDONUCLEASE, PUTATIVE-RELATED	coord: 3..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0624.1	MC04g0624.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity