MC04g0484 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0484
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	MC04: 4039588 .. 4039835 (-)
RNA-Seq Expression	MC04g0484
Synteny	MC04g0484

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATTGAGTATAGGAAATATTATTGACACCAATAAAGCTTTGCACATCAAGTGGTTGCGGAGATTTTTCTTTGAAAAAGACAGCTTGTGGTCATCTTTGATTGCTGTGAAATATGAAGCCCAGTTTCCAAATTTCATTCCCACCATGGAAGTCCAAAGTCTCCATGGTTCCACATCAAGAAATTCACTCATCTTTTCCATGGTTTGACAAATTGGAAGGTGGGCAATGGTAAATCTTTCTTTTTTTTT

mRNA sequence

GGATTGAGTATAGGAAATATTATTGACACCAATAAAGCTTTGCACATCAAGTGGTTGCGGAGATTTTTCTTTGAAAAAGACAGCTTGTGGTCATCTTTGATTGCTGTGAAATATGAAGCCCAGTTTCCACATTCCCACCATGGAAGTCCAAAGTCTCCATGGTTCCACATCAAGAAATTCACTCATCTTTTCCATGGTTTGACAAATTGGAAGGTGGGCAATGGTAAATCTTTCTTTTTTTTT

Coding sequence (CDS)

GGATTGAGTATAGGAAATATTATTGACACCAATAAAGCTTTGCACATCAAGTGGTTGCGGAGATTTTTCTTTGAAAAAGACAGCTTGTGGTCATCTTTGATTGCTGTGAAATATGAAGCCCAGTTTCCACATTCCCACCATGGAAGTCCAAAGTCTCCATGGTTCCACATCAAGAAATTCACTCATCTTTTCCATGGTTTGACAAATTGGAAGGTGGGCAATGGTAAATCTTTCTTTTTTTTT

Protein sequence

GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHSHHGSPKSPWFHIKKFTHLFHGLTNWKVGNGKSFFFF

Homology

[Close]

BLAST of MC04g0484 vs. NCBI nr
Match: KAA0065894.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK15123.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.12e-08
Identity = 37/87 (42.53%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHSHH----------GSP 60
           GL I N+ DTN AL  KWL RF  EKDSLW  LI+VKY+      HH           + 
Sbjct: 194 GLGITNVKDTNIALLCKWLWRFQEEKDSLWVKLISVKYKG-----HHIGDIPTKRKYSNM 253

Query: 61  KSPWFHIKKFTHLFHGLTNWKVGNGKS 77
           K+PW  I K    F     WK+  GK+
Sbjct: 254 KTPWRQIIKGIGWFENHWRWKINEGKN 275

[Close]

BLAST of MC04g0484 vs. NCBI nr
Match: XP_030497604.1 (uncharacterized protein LOC115713262 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 8.12e-08
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEA--QFPHSHHGS---PKSPWF 60
           GL IGN+  TNK L +KWL RF  E +SLW  ++  +Y     F  +  GS   PK PW 
Sbjct: 277 GLGIGNLELTNKGLLMKWLWRFPLEPNSLWHKVVLSRYGKADNFWDTRKGSLVSPKGPWR 336

Query: 61  HIKKFTHLFHGLTNWKVGNGKSFFF 80
            I      + GL  +K+GNG S +F
Sbjct: 337 DISDLYDKYLGLVQFKLGNGTSMWF 361

[Close]

BLAST of MC04g0484 vs. NCBI nr
Match: XP_028056784.1 (uncharacterized protein LOC114260796 [Camellia sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 1.12e-07
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHS-----HHGSPKSPWF 60
           GL+I NI+  N A   KWL RF  E +SLW S+I  KY  Q         + G+ +SPW 
Sbjct: 379 GLAIENIVARNIAFLGKWLWRFPLESESLWCSVIKSKYGVQSNGRDSNVVNRGNCRSPWK 438

Query: 61  HIKKFTHLFHGLTNWKVGNGKSFFF 80
            I +   L     ++KVGNGKS+ F
Sbjct: 439 SISRLYPLVSNFLSFKVGNGKSYLF 463

[Close]

BLAST of MC04g0484 vs. NCBI nr
Match: PON86224.1 (hypothetical protein TorRG33x02_179430, partial [Trema orientale])

HSP 1 Score: 55.5 bits (132), Expect = 9.21e-07
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPH-----SHHGSPKSPWF 60
           GL IG ++  NKAL +KWL RF  EKD+LW  +I  KY           +   + +SPW 
Sbjct: 32  GLGIGKLLIRNKALILKWLCRFPQEKDALWHKMIKSKYGLASNSWDSKIASRTTYRSPWK 91

Query: 61  HIKKFTHLFHGLTNWKVGNGKS 77
            I K   +F+ +  +KVGNG +
Sbjct: 92  FILKQYDIFYKMVAFKVGNGDN 113

[Close]

BLAST of MC04g0484 vs. NCBI nr
Match: TYK10887.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 2.37e-06
Identity = 33/86 (38.37%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHSHHG---------SPK 60
           GL I  + DTN+AL  KWL R+  E +SLW   I  KY      +H G         S K
Sbjct: 203 GLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTK----NHQGDIPVVGRNSSAK 262

Query: 61  SPWFHIKKFTHLFHGLTNWKVGNGKS 77
           SPW  IKK+   F    +W   +G S
Sbjct: 263 SPWNAIKKWKDWFESKISWIPNDGSS 284

[Close]

BLAST of MC04g0484 vs. ExPASy TrEMBL
Match: A0A5A7VF18 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00550 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.43e-09
Identity = 37/87 (42.53%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHSHH----------GSP 60
           GL I N+ DTN AL  KWL RF  EKDSLW  LI+VKY+      HH           + 
Sbjct: 194 GLGITNVKDTNIALLCKWLWRFQEEKDSLWVKLISVKYKG-----HHIGDIPTKRKYSNM 253

Query: 61  KSPWFHIKKFTHLFHGLTNWKVGNGKS 77
           K+PW  I K    F     WK+  GK+
Sbjct: 254 KTPWRQIIKGIGWFENHWRWKINEGKN 275

[Close]

BLAST of MC04g0484 vs. ExPASy TrEMBL
Match: A0A2P5EL14 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_179430 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.46e-07
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPH-----SHHGSPKSPWF 60
           GL IG ++  NKAL +KWL RF  EKD+LW  +I  KY           +   + +SPW 
Sbjct: 32  GLGIGKLLIRNKALILKWLCRFPQEKDALWHKMIKSKYGLASNSWDSKIASRTTYRSPWK 91

Query: 61  HIKKFTHLFHGLTNWKVGNGKS 77
            I K   +F+ +  +KVGNG +
Sbjct: 92  FILKQYDIFYKMVAFKVGNGDN 113

[Close]

BLAST of MC04g0484 vs. ExPASy TrEMBL
Match: A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.43e-07
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEA--QFPHSHHG---SPKSPWF 60
           GL+IG +   NK L +KWL RF  E +SLW  +I  +Y     F  +  G   SP+ PW 
Sbjct: 855 GLAIGRLEMRNKGLLMKWLWRFPLESNSLWHKVIKSRYGKADNFWDTKQGVRMSPRGPWM 914

Query: 61  HIKKFTHLFHGLTNWKVGNGKS 77
            I    H +  +  +KVGNG S
Sbjct: 915 DIADLYHEYGKMVKFKVGNGAS 936

[Close]

BLAST of MC04g0484 vs. ExPASy TrEMBL
Match: A0A2N9FY27 (Importin N-terminal domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23398 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.46e-07
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHSHHGSPKSP-----WF 60
           GL I N+I +N+AL  KWL RF  E+D+LW  ++A+KY     +   G    P     W 
Sbjct: 280 GLGIQNLIYSNQALLGKWLWRFATEQDALWRKVVALKYGISPGNWVSGIGHGPYGISLWK 339

Query: 61  HIKKFTHLFHGLTNWKVGNG 75
           HI+K    F G   ++VGNG
Sbjct: 340 HIRKGWEKFQGYIKFEVGNG 359

[Close]

BLAST of MC04g0484 vs. ExPASy TrEMBL
Match: A0A2N9IWF6 (Importin N-terminal domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57104 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.46e-07
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 1   GLSIGNIIDTNKALHIKWLRRFFFEKDSLWSSLIAVKYEAQFPHSHHGSPKSP-----WF 60
           GL I N+I +N+AL  KWL RF  E+D+LW  ++A+KY     +   G    P     W 
Sbjct: 280 GLGIQNLIYSNQALLGKWLWRFATEQDALWRKVVALKYGISPGNWVSGIGHGPYGISLWK 339

Query: 61  HIKKFTHLFHGLTNWKVGNG 75
           HI+K    F G   ++VGNG
Sbjct: 340 HIRKGWEKFQGYIKFEVGNG 359

The following BLAST results are available for this feature:

BLAST of MC04g0484 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0484 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065894.1	1.12e-08	42.53	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK151...	[more]
XP_030497604.1	8.12e-08	41.18	uncharacterized protein LOC115713262 [Cannabis sativa]	[more]
XP_028056784.1	1.12e-07	41.18	uncharacterized protein LOC114260796 [Camellia sinensis]	[more]
PON86224.1	9.21e-07	39.02	hypothetical protein TorRG33x02_179430, partial [Trema orientale]	[more]
TYK10887.1	2.37e-06	38.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MC04g0484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF18	5.43e-09	42.53	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A2P5EL14	4.46e-07	39.02	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_179...	[more]
A0A803P8A0	9.43e-07	39.02	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2N9FY27	9.46e-07	40.00	Importin N-terminal domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9IWF6	9.46e-07	40.00	Importin N-terminal domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of MC04g0484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0484.1	MC04g0484.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044255	cellular lipid metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding