MC04g0436 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g0436
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description30S ribosomal protein S31, mitochondrial
LocationMC04: 3496403 .. 3496666 (+)
RNA-Seq ExpressionMC04g0436
SyntenyMC04g0436
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCTAGGCGAGTGATGGCGACGGAGCGGCGCGCTCCTTCACTAACGTCACCAATGGCGGCCGAAGCTCTGGTGCCGATCCTGTGTGGACGAGGTGACAAGAAGACCAAAAAGGGGAAGAGATTCAAAGGCTCCTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGCATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATC

mRNA sequence

ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCTAGGCGAGTGATGGCGACGGAGCGGCGCGCTCCTTCACTAACGTCACCAATGGCGGCCGAAGCTCTGGTGCCGATCCTGTGTGGACGAGGTGACAAGAAGACCAAAAAGGGGAAGAGATTCAAAGGCTCCTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGCATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATC

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCTAGGCGAGTGATGGCGACGGAGCGGCGCGCTCCTTCACTAACGTCACCAATGGCGGCCGAAGCTCTGGTGCCGATCCTGTGTGGACGAGGTGACAAGAAGACCAAAAAGGGGAAGAGATTCAAAGGCTCCTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGCATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATC

Protein sequence

MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI
Homology
[Close]
BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.8e-26
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATER---------RAPSLTSPMAAEALVPI-LCGRGDKKTKKGKR 60
          MA MQWCGA+ RR+M T+R         R  SL+   AA A+  + LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]
BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-21
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 

Query: 19 RRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSS 78
          RR     +P+ +     + CGRGDKKTK+GKRFKGSYGNARPK+EKKI+RIKD++EVP S
Sbjct: 13 RRLVPARNPVISAEAEAVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRS 72

Query: 79 TPWPLPFKLI 89
          TPWPLPFKLI
Sbjct: 73 TPWPLPFKLI 82

[Close]
BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 23 SLTSPMAAEALVPIL-CGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          SL+S ++    +P++ CGRGD+KT KGKRF  S+GNARPK + K
Sbjct: 38 SLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]
BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-05
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 26 SPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          S  ++ ++  + CGRGD+KT KGKRF  S+GNARP+ + K  R  +++ VP + P
Sbjct: 43 STSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

[Close]
BLAST of MC04g0436 vs. NCBI nr
Match: XP_022136007.1 (30S ribosomal protein S31, mitochondrial [Momordica charantia])

HSP 1 Score: 174 bits (441), Expect = 1.01e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 8.99e-49
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVAR VMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. NCBI nr
Match: XP_038888313.1 (30S ribosomal protein S31, mitochondrial [Benincasa hispida])

HSP 1 Score: 155 bits (392), Expect = 3.02e-47
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM Q CGA+AR VMA ERR+PSLTS MAAE LVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 154 bits (390), Expect = 5.74e-47
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0 

Query: 3  MMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          M QWCGA+A+RVMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]
BLAST of MC04g0436 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 8.65e-47
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVAR V+A ERR+PSLTS MA E LVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A6J1C4C8 (30S ribosomal protein S31, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007814 PE=3 SV=1)

HSP 1 Score: 174 bits (441), Expect = 4.87e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 159 bits (402), Expect = 4.35e-49
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVAR VMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 154 bits (390), Expect = 2.78e-47
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0 

Query: 3  MMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          M QWCGA+A+RVMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]
BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.19e-47
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVAR V+A ERR+PSLTS MA E LVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.19e-47
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVAR V+A ERR+PSLTS MA E LVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of MC04g0436 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.5 bits (293), Expect = 5.5e-27
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 1  MAMMQWCGAVARRVMATER---------RAPSLTSPMAAEALVPI-LCGRGDKKTKKGKR 60
          MA MQWCGA+ RR+M T+R         R  SL+   AA A+  + LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]
BLAST of MC04g0436 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 26 SPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          S  ++ ++  + CGRGD+KT KGKRF  S+GNARP+ + K  R  +++ VP + P
Sbjct: 43 STSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:
BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJU87.8e-2664.2930S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
P479092.0e-2168.5730S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
P479103.4e-0554.5530S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
O804397.6e-0543.6430S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3... [more]
BLAST of MC04g0436 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136007.11.01e-54100.0030S ribosomal protein S31, mitochondrial [Momordica charantia][more]
XP_022933003.18.99e-4992.0530S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30... [more]
XP_038888313.13.02e-4790.9130S ribosomal protein S31, mitochondrial [Benincasa hispida][more]
XP_022952601.15.74e-4789.5330S ribosomal protein S31, mitochondrial-like [Cucurbita moschata][more]
XP_008448047.18.65e-4787.50PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1... [more]
BLAST of MC04g0436 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C4C84.87e-55100.0030S ribosomal protein S31, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1F3E94.35e-4992.0530S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1GKP42.78e-4789.5330S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5A7SX604.19e-4787.5030S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BI884.19e-4787.5030S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344... [more]
BLAST of MC04g0436 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21290.15.5e-2764.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G38140.15.4e-0643.64plastid-specific ribosomal protein 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 39..62
e-value: 1.3E-10
score: 39.0
IPR03082630S ribosomal proteinPFAMPF17067RPS31coord: 32..80
e-value: 3.2E-11
score: 43.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..67
NoneNo IPR availablePANTHERPTHR34550:SF330S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..88
IPR04469530S ribosomal protein S31, plantPANTHERPTHR3455030S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g0436.1MC04g0436.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome