MC04g0436 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0436
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S31, mitochondrial
Location	MC04: 3496403 .. 3496666 (+)
RNA-Seq Expression	MC04g0436
Synteny	MC04g0436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCTAGGCGAGTGATGGCGACGGAGCGGCGCGCTCCTTCACTAACGTCACCAATGGCGGCCGAAGCTCTGGTGCCGATCCTGTGTGGACGAGGTGACAAGAAGACCAAAAAGGGGAAGAGATTCAAAGGCTCCTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGCATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATC

mRNA sequence

ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCTAGGCGAGTGATGGCGACGGAGCGGCGCGCTCCTTCACTAACGTCACCAATGGCGGCCGAAGCTCTGGTGCCGATCCTGTGTGGACGAGGTGACAAGAAGACCAAAAAGGGGAAGAGATTCAAAGGCTCCTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGCATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATC

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCTAGGCGAGTGATGGCGACGGAGCGGCGCGCTCCTTCACTAACGTCACCAATGGCGGCCGAAGCTCTGGTGCCGATCCTGTGTGGACGAGGTGACAAGAAGACCAAAAAGGGGAAGAGATTCAAAGGCTCCTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGCATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATC

Protein sequence

MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI

Homology

[Close]

BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.8e-26
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATER---------RAPSLTSPMAAEALVPI-LCGRGDKKTKKGKR 60
          MA MQWCGA+ RR+M T+R         R  SL+   AA A+  + LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-21
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 19 RRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSS 78
          RR     +P+ +     + CGRGDKKTK+GKRFKGSYGNARPK+EKKI+RIKD++EVP S
Sbjct: 13 RRLVPARNPVISAEAEAVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRS 72

Query: 79 TPWPLPFKLI 89
          TPWPLPFKLI
Sbjct: 73 TPWPLPFKLI 82

[Close]

BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 23 SLTSPMAAEALVPIL-CGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          SL+S ++    +P++ CGRGD+KT KGKRF  S+GNARPK + K
Sbjct: 38 SLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]

BLAST of MC04g0436 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-05
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 26 SPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          S  ++ ++  + CGRGD+KT KGKRF  S+GNARP+ + K  R  +++ VP + P
Sbjct: 43 STSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

[Close]

BLAST of MC04g0436 vs. NCBI nr
Match: XP_022136007.1 (30S ribosomal protein S31, mitochondrial [Momordica charantia])

HSP 1 Score: 174 bits (441), Expect = 1.01e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 8.99e-49
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVAR VMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. NCBI nr
Match: XP_038888313.1 (30S ribosomal protein S31, mitochondrial [Benincasa hispida])

HSP 1 Score: 155 bits (392), Expect = 3.02e-47
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM Q CGA+AR VMA ERR+PSLTS MAAE LVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 154 bits (390), Expect = 5.74e-47
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 3  MMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          M QWCGA+A+RVMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of MC04g0436 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 8.65e-47
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVAR V+A ERR+PSLTS MA E LVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A6J1C4C8 (30S ribosomal protein S31, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007814 PE=3 SV=1)

HSP 1 Score: 174 bits (441), Expect = 4.87e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 159 bits (402), Expect = 4.35e-49
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMMQWCGAVAR VMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 154 bits (390), Expect = 2.78e-47
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 3  MMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          M QWCGA+A+RVMA ERR+PSLTS MA E LVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 88
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.19e-47
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVAR V+A ERR+PSLTS MA E LVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.19e-47
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATERRAPSLTSPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVAR V+A ERR+PSLTS MA E LVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of MC04g0436 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.5 bits (293), Expect = 5.5e-27
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1  MAMMQWCGAVARRVMATER---------RAPSLTSPMAAEALVPI-LCGRGDKKTKKGKR 60
          MA MQWCGA+ RR+M T+R         R  SL+   AA A+  + LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of MC04g0436 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 26 SPMAAEALVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          S  ++ ++  + CGRGD+KT KGKRF  S+GNARP+ + K  R  +++ VP + P
Sbjct: 43 STSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:

BLAST of MC04g0436 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJU8	7.8e-26	64.29	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g...	[more]
P47909	2.0e-21	68.57	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P47910	3.4e-05	54.55	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
O80439	7.6e-05	43.64	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]

BLAST of MC04g0436 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136007.1	1.01e-54	100.00	30S ribosomal protein S31, mitochondrial [Momordica charantia]	[more]
XP_022933003.1	8.99e-49	92.05	30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30...	[more]
XP_038888313.1	3.02e-47	90.91	30S ribosomal protein S31, mitochondrial [Benincasa hispida]	[more]
XP_022952601.1	5.74e-47	89.53	30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]	[more]
XP_008448047.1	8.65e-47	87.50	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1...	[more]

BLAST of MC04g0436 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4C8	4.87e-55	100.00	30S ribosomal protein S31, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1F3E9	4.35e-49	92.05	30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GKP4	2.78e-47	89.53	30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7SX60	4.19e-47	87.50	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BI88	4.19e-47	87.50	30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344...	[more]

BLAST of MC04g0436 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21290.1	5.5e-27	64.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G38140.1	5.4e-06	43.64	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 39..62 e-value: 1.3E-10 score: 39.0
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 32..80 e-value: 3.2E-11 score: 43.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67
None	No IPR available	PANTHER	PTHR34550:SF3	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..88
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0436.1	MC04g0436.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome