|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATTGTTTTGTTGTCAAGTGCGGAGGACCTCGTCAAATGTCGAGGGGCGTCGTCATCGGTGAGGCTGCAGCGGTGGTAAGGAGCAAGAAATGGCAACGGTGGCTGGCTGGCGTCGGCGGTGGCAGTAAGAAGAGAGAAATGGTATCATCGATGAAACCGCGGGGTGGCAAGCGACGACCGGGAGGGAGAGATGAGGTGGGCGGATGGGTTGCGGCATGGCTGCAAGAGGCTGAAGACCAAACAGACAAGGAA mRNA sequence ATGGATTGTTTTGTTGTCAAGTGCGGAGGACCTCGTCAAATGTCGAGGGGCGTCGTCATCGGTGAGGCTGCAGCGGTGGTAAGGAGCAAGAAATGGCAACGGTGGCTGGCTGGCGTCGGCGGTGGCAGTAAGAAGAGAGAAATGGTATCATCGATGAAACCGCGGGGTGGCAAGCGACGACCGGGAGGGAGAGATGAGGTGGGCGGATGGGTTGCGGCATGGCTGCAAGAGGCTGAAGACCAAACAGACAAGGAA Coding sequence (CDS) ATGGATTGTTTTGTTGTCAAGTGCGGAGGACCTCGTCAAATGTCGAGGGGCGTCGTCATCGGTGAGGCTGCAGCGGTGGTAAGGAGCAAGAAATGGCAACGGTGGCTGGCTGGCGTCGGCGGTGGCAGTAAGAAGAGAGAAATGGTATCATCGATGAAACCGCGGGGTGGCAAGCGACGACCGGGAGGGAGAGATGAGGTGGGCGGATGGGTTGCGGCATGGCTGCAAGAGGCTGAAGACCAAACAGACAAGGAA Protein sequence MDCFVVKCGGPRQMSRGVVIGEAAAVVRSKKWQRWLAGVGGGSKKREMVSSMKPRGGKRRPGGRDEVGGWVAAWLQEAEDQTDKE
Homology
BLAST of MC04g0395 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 53.9 bits (128), Expect = 5.62e-07 Identity = 35/95 (36.84%), Postives = 45/95 (47.37%), Query Frame = 0
Query: 1 MDCFVVKCGGPRQMSR----------------GVVIGEAAAVVRSKKWQRWLAGVGGGSK 60
MDCF+V CG RQ R G+V+ E + KKWQR VG +
Sbjct: 1 MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER 60
Query: 61 KREMVSSMKPRGGKRRPGGRDEVGGWVAAWLQEAE 79
+ + +R GGR E GGW+AAWL+EAE
Sbjct: 61 ETSRL--------QRTDGGRVESGGWLAAWLEEAE 86
BLAST of MC04g0395 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus]) HSP 1 Score: 46.2 bits (108), Expect = 6.04e-04 Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 0
Query: 1 MDCFVVKCGGPRQMSR-----------------GVVIGEAAAVVR-SKKWQRWLAGVGGG 60
M+CF+ KCG Q+ R +VIGEA ++ S+K R +
Sbjct: 1 MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVR----- 60
Query: 61 SKKREMVSSMKPRGGKRRPGGRDEVGGWVAAWLQEAEDQTDKE 85
SK+R+M+ S +R R E+GGW+AAWL+EAE + +K+
Sbjct: 61 SKERKMMPSSSRL--QRSQIERVELGGWLAAWLEEAEGEREKD 96
BLAST of MC04g0395 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.92e-04 Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 0
Query: 1 MDCFVVKCGGPRQMSR-----------------GVVIGEAAAVVR-SKKWQRWLAGVGGG 60
M+CF+ KCG Q+ R +VIGEA ++ S+K R +
Sbjct: 1 MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVR----- 60
Query: 61 SKKREMVSSMKPRGGKRRPGGRDEVGGWVAAWLQEAEDQTDKE 85
SK+R+M+ S +R R E+GGW+AAWL+EAE + +K+
Sbjct: 61 SKERKMMPSSSRL--QRSQIERVELGGWLAAWLEEAEGEREKD 96
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6572110.1 | 5.62e-07 | 36.84 | hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN43248.1 | 6.04e-04 | 33.98 | hypothetical protein Csa_020351 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K1A5 | 2.92e-04 | 33.98 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..65 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..66 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
