MC04g0388 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0388
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	SKP1-like protein
Location	MC04: 3110060 .. 3112330 (-)
RNA-Seq Expression	MC04g0388
Synteny	MC04g0388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGATTCATATAGTTTTAAAAGTTTAAATTTAGCCTCTATAATTTTGAAAATTTCATCTAACACATTGACTTGGGTGTTTTGTACCCAAATTATAGGGAAGAAATAACCCACCACCACCCATGTGAGCTTTCTGCTGACTGACCACTATATAAGTCACTGGCATTGAGCTTTCTCCAGACTTTTTGGTGAGGATGAAAAAAATTCTCCTTTCATTATTAGCCATAAAAGCAACATTTAAAAATAGTGTAGGATCCATAAAATAAAAACAATATATTATTATCAAAACGTAAATGAAAATTGTAAAAATTTTCCTTATGATAAATAGTGTCCCACGCAGAAACGGAATCGCGTGGAAGCGAAACGACATCCCAAAAGTGCACTATTTAAAGGAAACCCCTCCGTTCTTCTCTTATTTCCCGTTTCTTCGCTTCCGAAATCTTCCAAATCGTCGCGCCTTAGGGTTTCCTTTTTTTCCTCCCAATTCCGATTCCCCAACCGGAGACAATGTCGTCGTCGAAGAAGATCGTCCTCAAGAGTTCCGACGGCGAAACTTTCGAGGTCGAGGAAGCCGTGGCGGTCGAGTCGCAGACCATCAAGCACATGATTGAGGACGATTGCGCCGATAATGTCATTCCCTTGCCCAATGTTAACAGTGCCATCCTCGCCAAGGTAATTGAGTATTGTAAGAAGCATGTCGAGACTGATGATAAGGATTCTAAAGCCGTCGATGATAGTCTCAAGACCTGGGATGCTGAATATGTCAAGGTTGATCAGAATACCCTATTTGATCTCATCCTGGTCAGTTTTTCTTTTCCCTTCTCTGTTTATGTTCATGATTCTCTTTATTTCTCCCCTGATTTTAAAAATTTTCATCTCCTTTCCGTGTGATTGTCTTGGAATGTAGGGAGTTGCTTTAGTTGTCGAGTTTCTTGTATGTTGGGGCTTTTAGATTATCTGTAGCATGCTATCCAAAGCTGTTATTGAGGGATTCATGTCTATTTCGTTGTTTTTTCTTGCGATTATGTTGACCCTTTTGCTCCATCCTTGGAATTCGATTTTGCTTCTTCTTTTTTTTTTGAAATCCCGTGTGTCGGGGCCAGCTTGCTCGCACCACTAACTAACTACATTTGGTTGAGAAAGGTAACTCCTAGGATATTAAATCCTAAGAAGGTGTCCACCATGGTTTGAACTCATTCCCTCCAAGTACTTTATACAAAGGCCCTCAAGTCCTATGACGGTTAATTCGATTTTGCTTCCTTGTTAGGCAAAACTTACAATTGAGGATTACTATGAATTAGTGACTTAGTATATCATCATGTATATTTGGTATGCTATATAATTACAATTGACTGTTTATTCTAGCATGATTTAGTCCTAATGGACCATTCCCGTATGCATTCTTTTATTGATTCAATTAACACACCTTGAATTTACTTTTAGTTGCCTTTAAAGTGGAAGATTATTAGGTCGGGTTCGGGATGACTTTTTGAACGTGAAAAGTGCTTTGAGCCCTTTAAAAACTTTTCTTTTTCTTTTCCTTAGAAATTTTCATAGTGTTTGTTCAGTTAATCAAAAGTGATTTTGAACAATTTGTAAAGGTCCTTTAGCTTTTAGGAAAAGCACCAGTGCTTCTTTCAAAAGTGAAGTTAAGTATACTAGACGATCTTATCAATTTGGTTCTCTTTTTACCATCTGGGCATGTTCTGGTTGCCACCCAAATACGCATCACAAGATTTCTGAACAGACTTTATTGTTAATTTCCCAGTTTTCAAATTATATCCAGTTAAATTACTGTCTATTGCATGAACTTTATTCTCTCTGGGTCTTTTCTTTGCTCTGCTTGTGAGTAATGGATATGCATTTTCTTCCCCCCAATTCAGGCAGCTAATTATTTGAACATCAAGGGCCTGCTGGATCTGACCTGCCAGACCGTGGCCGACATGATCAAGGGAAAGACTCCAGAGGAAATTCGAAAGACATTCAATATCAAGAATGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTTGAGTGAAGTCTGAAGATTGATTTAATTAACTGGTTTAGTAGTAATGTCTATACAGTTTAGGGACTTGGCGTTTTAGTTTTTGGGATGCTTATTTAGGCTTCCATCTCTCTGTTTTTCTATTCCCTTTTCTTGAGAATTTATCTTAGATTAATATATAGTCTTTCTAAAATCTAATGACAAAAGAGGATTGCATATATAAAGTTTCTTGAATCATTCTTTT

mRNA sequence

ATTTGATTCATATAGTTTTAAAAGTTTAAATTTAGCCTCTATAATTTTGAAAATTTCATCTAACACATTGACTTGGGTGTTTTGTACCCAAATTATAGGGAAGAAATAACCCACCACCACCCATGTGAGCTTTCTGCTGACTGACCACTATATAAGTCACTGGCATTGAGCTTTCTCCAGACTTTTTGAAACGGAATCGCGTGGAAGCGAAACGACATCCCAAAAGTGCACTATTTAAAGGAAACCCCTCCGTTCTTCTCTTATTTCCCGTTTCTTCGCTTCCGAAATCTTCCAAATCGTCGCGCCTTAGGGTTTCCTTTTTTTCCTCCCAATTCCGATTCCCCAACCGGAGACAATGTCGTCGTCGAAGAAGATCGTCCTCAAGAGTTCCGACGGCGAAACTTTCGAGGTCGAGGAAGCCGTGGCGGTCGAGTCGCAGACCATCAAGCACATGATTGAGGACGATTGCGCCGATAATGTCATTCCCTTGCCCAATGTTAACAGTGCCATCCTCGCCAAGGTAATTGAGTATTGTAAGAAGCATGTCGAGACTGATGATAAGGATTCTAAAGCCGTCGATGATAGTCTCAAGACCTGGGATGCTGAATATGTCAAGGTTGATCAGAATACCCTATTTGATCTCATCCTGGCAGCTAATTATTTGAACATCAAGGGCCTGCTGGATCTGACCTGCCAGACCGTGGCCGACATGATCAAGGGAAAGACTCCAGAGGAAATTCGAAAGACATTCAATATCAAGAATGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTTGAGTGAAGTCTGAAGATTGATTTAATTAACTGGTTTAGTAGTAATGTCTATACAGTTTAGGGACTTGGCGTTTTAGTTTTTGGGATGCTTATTTAGGCTTCCATCTCTCTGTTTTTCTATTCCCTTTTCTTGAGAATTTATCTTAGATTAATATATAGTCTTTCTAAAATCTAATGACAAAAGAGGATTGCATATATAAAGTTTCTTGAATCATTCTTTT

Coding sequence (CDS)

ATGTCGTCGTCGAAGAAGATCGTCCTCAAGAGTTCCGACGGCGAAACTTTCGAGGTCGAGGAAGCCGTGGCGGTCGAGTCGCAGACCATCAAGCACATGATTGAGGACGATTGCGCCGATAATGTCATTCCCTTGCCCAATGTTAACAGTGCCATCCTCGCCAAGGTAATTGAGTATTGTAAGAAGCATGTCGAGACTGATGATAAGGATTCTAAAGCCGTCGATGATAGTCTCAAGACCTGGGATGCTGAATATGTCAAGGTTGATCAGAATACCCTATTTGATCTCATCCTGGCAGCTAATTATTTGAACATCAAGGGCCTGCTGGATCTGACCTGCCAGACCGTGGCCGACATGATCAAGGGAAAGACTCCAGAGGAAATTCGAAAGACATTCAATATCAAGAATGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTTGAGTGA

Protein sequence

MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

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BLAST of MC04g0388 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-65
Identity = 128/171 (74.85%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MS+ +KI LKSSDGE FE++EAVA+ESQTIKHMIEDDC DN IPLPNV S IL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDDKD----------------SKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLN 120
           K+HVE  +K                 S + D+ LKTWD+E++KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of MC04g0388 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.4e-64
Identity = 125/159 (78.62%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 3   SSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKK 62
           S+KKIVLKSSDGE+FEVEEAVA+ESQTI HM+EDDC DN +PLPNV S ILAKVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDSKAV------DDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 122
           HVE     ++AV      DD LK WDA+++K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of MC04g0388 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 129/166 (77.71%), Postives = 136/166 (81.93%), Query Frame = 0


Query: 5   KKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKKHV 64
           K I LKSSDGE FEVEEAVA+ESQTI+HMIEDDCADN IPLPNVNS IL+KVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E-TDDKDSKAVDDS--------------LKTWDAEYVKVDQNTLFDLILAANYLNIKGLL 124
                  SKA DD+              LK WDA++VKVDQ TLFDLILAANYLNIKGLL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of MC04g0388 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-59
Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 7   IVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKKHVE- 66
           I L+S +G+ FEV EAVA+ESQTI+HMIED CAD  IPLPNV++ IL+KVIEYC KHVE 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ------TDDKD---------SKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLD 126
                   D D         +KAV+D LKT+DAE+VKVDQ+TLFDLILAANYLNIKGLLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of MC04g0388 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-58
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 3   SSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKK 62
           + K I+LKSSDGE+FE+EEAVAV+SQTIKHMIEDDCADN IPLPNV  AILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQT 122
           HVE       DKD    A +D LK WD+E+VKVDQ TLFDLILAANYLNI GLLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of MC04g0388 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 303 bits (777), Expect = 7.98e-104
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. NCBI nr
Match: XP_004144851.1 (SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 283 bits (724), Expect = 9.64e-96
Identity = 142/155 (91.61%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDCAD VIPLPNV SAIL+KVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. NCBI nr
Match: XP_008447950.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1B [Cucumis melo var. makuwa] >TYK12120.1 SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 281 bits (719), Expect = 5.58e-95
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDC D VIPLPNV SAIL+KV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. NCBI nr
Match: KAG7015279.1 (SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (686), Expect = 5.99e-90
Identity = 135/155 (87.10%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSK IVL+SSDGE F ++EAVA+ESQTIKHMIEDDCAD VIP+PNV  +ILAKVIEYC
Sbjct: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           KKHVETD KDSKA+DD+LK WDAE+VKVDQN LFDLILAANYL+IK LLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. NCBI nr
Match: XP_023529806.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268 bits (684), Expect = 1.21e-89
Identity = 134/155 (86.45%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSK I+L+SSDGETF ++EAVA+ESQTIKHMIEDDCAD VIP+PNV  +ILA VIEYC
Sbjct: 1   MSSSKVILLRSSDGETFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAMVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           KKHVETD KDSKA+DD+LK WDAE+VKVDQN LFDLILAANYL+IK LLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 3.86e-104
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. ExPASy TrEMBL
Match: A0A0A0K4P4 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 283 bits (724), Expect = 4.67e-96
Identity = 142/155 (91.61%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDCAD VIPLPNV SAIL+KVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. ExPASy TrEMBL
Match: A0A5A7U3D8 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00540 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 2.70e-95
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDC D VIPLPNV SAIL+KV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. ExPASy TrEMBL
Match: A0A1S3BI15 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 2.70e-95
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDC D VIPLPNV SAIL+KV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           K HVETDDKDSK +DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. ExPASy TrEMBL
Match: A0A6J1EKE0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 5.86e-90
Identity = 134/155 (86.45%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MSSSK IVL+SSDGETF ++EAVA+ESQTIK+MIEDDCAD VIP+PNV  +ILA+VIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120
           KKHVETD KDSKA+DD+LK WDAE+VKVDQN LFDLILAANYL+IK LLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MC04g0388 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-66
Identity = 128/171 (74.85%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60
           MS+ +KI LKSSDGE FE++EAVA+ESQTIKHMIEDDC DN IPLPNV S IL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDDKD----------------SKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLN 120
           K+HVE  +K                 S + D+ LKTWD+E++KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of MC04g0388 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 244.6 bits (623), Expect = 5.3e-65
Identity = 125/159 (78.62%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 3   SSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKK 62
           S+KKIVLKSSDGE+FEVEEAVA+ESQTI HM+EDDC DN +PLPNV S ILAKVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDSKAV------DDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 122
           HVE     ++AV      DD LK WDA+++K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of MC04g0388 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 227.3 bits (578), Expect = 8.7e-60
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 3   SSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKK 62
           + K I+LKSSDGE+FE+EEAVAV+SQTIKHMIEDDCADN IPLPNV  AILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQT 122
           HVE       DKD    A +D LK WD+E+VKVDQ TLFDLILAANYLNI GLLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of MC04g0388 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 217.2 bits (552), Expect = 9.0e-57
Identity = 113/160 (70.62%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKK 62
           + K I+LKSSDGE+FEVEEAVAVESQTIKHMIEDDC DN IPLPNV  AILAKVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQT 122
           HVE       DKD      +  LKTWD ++VKVD  TLFDL+ AANYLNI GLLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of MC04g0388 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 107/153 (69.93%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 3   SSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCKK 62
           SSK IVL SSDG++FEVEEAVA++SQTI HM+EDDC  + IPL NV S IL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKG 122
           H    D+ +   ++ L  WD +++ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKG
Sbjct: 62  H--HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of MC04g0388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	6.7e-65	74.85	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	7.4e-64	78.62	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	1.1e-62	77.71	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	1.5e-59	74.55	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	1.2e-58	73.75	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of MC04g0388 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135870.1	7.98e-104	100.00	SKP1-like protein 1B [Momordica charantia]	[more]
XP_004144851.1	9.64e-96	91.61	SKP1-like protein 1B [Cucumis sativus]	[more]
XP_008447950.1	5.58e-95	90.32	PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1...	[more]
KAG7015279.1	5.99e-90	87.10	SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023529806.1	1.21e-89	86.45	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC04g0388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C297	3.86e-104	100.00	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A0A0K4P4	4.67e-96	91.61	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1	[more]
A0A5A7U3D8	2.70e-95	90.32	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00...	[more]
A0A1S3BI15	2.70e-95	90.32	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1	[more]
A0A6J1EKE0	5.86e-90	86.45	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1	[more]

BLAST of MC04g0388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	4.8e-66	74.85	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	5.3e-65	78.62	S phase kinase-associated protein 1	[more]
AT1G20140.1	8.7e-60	73.75	SKP1-like 4	[more]
AT2G25700.1	9.0e-57	70.63	SKP1-like 3	[more]
AT4G34210.1	1.1e-54	69.93	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 1.3E-52 score: 190.8
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 2.2E-67 score: 223.9
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.2E-30 score: 105.3
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 2..155 e-value: 2.0E-74 score: 250.9
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..67
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 4.1E-30 score: 103.7
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 3.72794E-59 score: 177.784
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0388.1	MC04g0388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity